Literature DB >> 24454013

Sodium selenite penta-hydrate, Na2SeO3·5H2O.

Kurt Mereiter1.   

Abstract

In the crystal structure of Na2SeO3·5H2O [disodium selen-ate(IV) penta-hydrate], two Se, two selenite O atoms and one water O atom are located on a mirror plane, and one water O atom is located on a twofold rotation axis. The coordination of one Na(+) cation is distorted trigonal bipyramidal, formed by three equatorial H2O ligands and two axial selenite O atoms. The other Na(+) cation has an octa-hedral coordination by six water mol-ecules. The two independent SeO3 groups form almost undistorted trigonal pyramids, with Se-O bond lengths in the range 1.6856 (7)-1.7202 (10) Å and O-Se-O angles in the range 101.98 (3)-103.11 (5)°, and both are μ2-O:O-bonded to a pair of Na(+) cations. Hydrogen bonds involving all water molecules and selenite O atoms consolidate the crystal packing. Although anhydrous Na2SeO3 and Na2TeO3 are isotypic, the title compound is surprisingly not isotypic with Na2TeO3·5H2O. In the tellurite hydrate, all Na(+) cations have an octa-hedral coordination and the TeO3 groups are bonded to Na(+) only via one of their three O atoms.

Entities:  

Year:  2013        PMID: 24454013      PMCID: PMC3884237          DOI: 10.1107/S1600536813028602

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of Na2TeO3·5H2O, see: Philippot et al. (1979 ▶). For crystal structure of anhydrous Na2SeO3 and Na2TeO3, see: Wickleder (2002 ▶); Masse et al. (1980 ▶). For the crystal structures of the isotypic series MgSO3·6H2O, MgSeO3·6H2O, MgTeO3·6H2O, and Mg(HPO3)·6H2O, see: Andersen & Lindqvist (1984 ▶); Andersen et al. (1984 ▶); Powell et al. (1994 ▶). For Na2(HPO3)·5H2O, see: Brodalla et al. (1978 ▶). For pharmaceutical aspects of Na2SeO3·5H2O, see: European Pharmacopoeia (2013 ▶). For van der Waals radii, see: Rowland & Taylor (1996 ▶).

Experimental

Crystal data

Na2SeO3·5H2O M = 263.02 Orthorhombic, a = 6.5865 (2) Å b = 17.2263 (6) Å c = 14.7778 (6) Å V = 1676.70 (10) Å3 Z = 8 Mo Kα radiation μ = 4.58 mm−1 T = 100 K 0.35 × 0.21 × 0.14 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.503, T max = 0.746 23979 measured reflections 2529 independent reflections 2435 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.015 wR(F 2) = 0.039 S = 1.07 2529 reflections 150 parameters 70 restraints All H-atom parameters refined Δρmax = 0.64 e Å−3 Δρmin = −0.58 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813028602/bt6939sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028602/bt6939Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Na2SeO3·5H2OF(000) = 1040
Mr = 263.02Dx = 2.084 Mg m3
Orthorhombic, PbcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2c 2bCell parameters from 7917 reflections
a = 6.5865 (2) Åθ = 2.4–30.0°
b = 17.2263 (6) ŵ = 4.58 mm1
c = 14.7778 (6) ÅT = 100 K
V = 1676.70 (10) Å3Prism, colourless
Z = 80.35 × 0.21 × 0.14 mm
Bruker SMART CCD diffractometer2529 independent reflections
Radiation source: fine-focus sealed tube2435 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
ω and φ scansθmax = 30.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −9→9
Tmin = 0.503, Tmax = 0.746k = −22→24
23979 measured reflectionsl = −20→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.015Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.039All H-atom parameters refined
S = 1.07w = 1/[σ2(Fo2) + (0.0224P)2 + 0.7143P] where P = (Fo2 + 2Fc2)/3
2529 reflections(Δ/σ)max = 0.003
150 parametersΔρmax = 0.64 e Å3
70 restraintsΔρmin = −0.58 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.51942 (7)0.40815 (3)0.62757 (3)0.01543 (9)
Na20.00865 (7)0.34328 (2)0.49775 (3)0.01121 (8)
Se10.36729 (2)0.233898 (8)0.75000.00946 (4)
O10.13882 (15)0.28182 (7)0.75000.01128 (19)
O20.48606 (11)0.27444 (4)0.66069 (5)0.01294 (14)
Se20.30596 (2)0.578291 (8)0.75000.00853 (4)
O30.08542 (15)0.52480 (6)0.75000.01135 (19)
O40.43189 (11)0.54110 (4)0.66066 (5)0.01209 (14)
O5W0.7537 (2)0.41001 (7)0.75000.0182 (2)
H5A0.840 (3)0.4453 (11)0.75000.051 (9)*
H5B0.821 (4)0.3692 (10)0.75000.112 (17)*
O6W0.16164 (12)0.40116 (4)0.62475 (6)0.01327 (15)
H6A0.149 (3)0.3651 (7)0.6612 (9)0.030 (5)*
H6B0.142 (3)0.4410 (6)0.6550 (10)0.038 (5)*
O7W0.73311 (12)0.43467 (5)0.50608 (5)0.01336 (14)
H7A0.682 (2)0.4442 (10)0.4557 (8)0.030 (4)*
H7B0.783 (2)0.4762 (7)0.5234 (10)0.030 (4)*
O8W0.27783 (17)0.25000.50000.0132 (2)
H8AB0.3565 (17)0.2526 (12)0.5444 (5)0.035 (5)*
O9W−0.12523 (11)0.24467 (5)0.60772 (6)0.01310 (15)
H9A−0.053 (2)0.2498 (10)0.6531 (9)0.030 (5)*
H9B−0.2434 (15)0.2472 (11)0.6262 (11)0.035 (5)*
O10W0.17400 (12)0.42733 (5)0.39277 (6)0.01412 (15)
H10A0.2910 (15)0.4283 (10)0.3722 (11)0.031 (5)*
H10B0.099 (2)0.4383 (11)0.3494 (9)0.030 (5)*
U11U22U33U12U13U23
Na10.0141 (2)0.0175 (2)0.0148 (2)−0.00088 (16)0.00163 (16)0.00129 (16)
Na20.01154 (18)0.01093 (18)0.01114 (19)0.00028 (14)−0.00033 (14)−0.00044 (14)
Se10.00905 (7)0.01022 (7)0.00911 (7)0.00145 (4)0.0000.000
O10.0073 (4)0.0151 (5)0.0114 (5)0.0017 (4)0.0000.000
O20.0110 (3)0.0179 (4)0.0099 (3)0.0010 (3)0.0022 (3)0.0016 (3)
Se20.00845 (7)0.00848 (7)0.00867 (7)−0.00085 (4)0.0000.000
O30.0080 (4)0.0127 (5)0.0133 (5)−0.0022 (4)0.0000.000
O40.0111 (3)0.0150 (3)0.0101 (3)−0.0005 (3)0.0018 (3)−0.0014 (3)
O5W0.0184 (5)0.0175 (6)0.0186 (6)−0.0028 (5)0.0000.000
O6W0.0166 (4)0.0106 (4)0.0126 (4)−0.0008 (3)−0.0011 (3)−0.0007 (3)
O7W0.0151 (3)0.0140 (3)0.0110 (3)0.0005 (3)−0.0004 (3)0.0001 (3)
O8W0.0116 (5)0.0181 (5)0.0099 (5)0.0000.000−0.0010 (4)
O9W0.0092 (3)0.0189 (4)0.0112 (3)−0.0001 (3)0.0004 (3)−0.0018 (3)
O10W0.0108 (3)0.0183 (4)0.0132 (4)−0.0008 (3)0.0001 (3)0.0022 (3)
Na1—O7W2.3266 (9)Se2—O31.7202 (10)
Na1—O6W2.3600 (9)O5W—Na1iii2.3781 (10)
Na1—O22.3650 (9)O5W—H5A0.831 (10)
Na1—O5W2.3781 (10)O5W—H5B0.833 (10)
Na1—O42.4119 (9)O6W—H6A0.826 (9)
Na2—O9Wi2.3458 (9)O6W—H6B0.830 (9)
Na2—O6W2.3520 (9)O7W—Na2iv2.4057 (9)
Na2—O10W2.3852 (9)O7W—H7A0.833 (9)
Na2—O8W2.3930 (9)O7W—H7B0.829 (9)
Na2—O7Wii2.4056 (9)O8W—Na2i2.3930 (9)
Na2—O9W2.5108 (9)O8W—H8AB0.837 (8)
Se1—O21.6857 (7)O9W—Na2i2.3457 (9)
Se1—O2iii1.6857 (7)O9W—H9A0.825 (9)
Se1—O11.7164 (10)O9W—H9B0.826 (9)
Se2—O41.6856 (7)O10W—H10A0.828 (9)
Se2—O4iii1.6856 (7)O10W—H10B0.829 (9)
O7W—Na1—O6W126.90 (3)Na1—O5W—Na1iii99.06 (5)
O7W—Na1—O2114.03 (3)Na1—O5W—H5A116.9 (10)
O6W—Na1—O282.02 (3)Na1iii—O5W—H5A116.9 (10)
O7W—Na1—O5W101.06 (4)Na1—O5W—H5B109.6 (13)
O6W—Na1—O5W131.46 (4)Na1iii—O5W—H5B109.6 (13)
O2—Na1—O5W85.18 (4)H5A—O5W—H5B104.6 (15)
O7W—Na1—O496.58 (3)Na2—O6W—Na1117.62 (4)
O6W—Na1—O479.24 (3)Na2—O6W—H6A99.2 (11)
O2—Na1—O4149.39 (3)Na1—O6W—H6A97.2 (12)
O5W—Na1—O489.32 (4)Na2—O6W—H6B135.6 (12)
O9Wi—Na2—O6W164.81 (3)Na1—O6W—H6B95.9 (13)
O9Wi—Na2—O10W97.56 (3)H6A—O6W—H6B104.8 (12)
O6W—Na2—O10W93.79 (3)Na1—O7W—Na2iv111.55 (3)
O9Wi—Na2—O8W81.60 (3)Na1—O7W—H7A119.0 (12)
O6W—Na2—O8W87.49 (3)Na2iv—O7W—H7A112.8 (12)
O10W—Na2—O8W94.49 (3)Na1—O7W—H7B99.9 (12)
O9Wi—Na2—O7Wii99.97 (3)Na2iv—O7W—H7B106.4 (12)
O6W—Na2—O7Wii90.29 (3)H7A—O7W—H7B105.4 (12)
O10W—Na2—O7Wii88.88 (3)H8ABi—O8W—Na2i115.7 (11)
O8W—Na2—O7Wii176.07 (3)H8ABi—O8W—Na2118.9 (12)
O9Wi—Na2—O9W82.01 (3)Na2i—O8W—Na284.39 (4)
O6W—Na2—O9W85.46 (3)H8ABi—O8W—H8AB103.5 (14)
O10W—Na2—O9W172.76 (3)Na2i—O8W—H8AB118.9 (12)
O8W—Na2—O9W78.28 (3)Na2—O8W—H8AB115.7 (11)
O7Wii—Na2—O9W98.32 (3)Na2i—O9W—Na282.82 (3)
O2iii—Se1—O2103.06 (5)Na2i—O9W—H9A113.2 (12)
O2iii—Se1—O1101.98 (3)Na2—O9W—H9A104.5 (12)
O2—Se1—O1101.98 (3)Na2i—O9W—H9B127.4 (12)
Se1—O2—Na1127.49 (4)Na2—O9W—H9B120.6 (13)
O4iii—Se2—O4103.11 (5)H9A—O9W—H9B105.5 (12)
O4iii—Se2—O3102.24 (3)Na2—O10W—H10A132.5 (12)
O4—Se2—O3102.24 (3)Na2—O10W—H10B111.7 (12)
Se2—O4—Na1129.59 (4)H10A—O10W—H10B105.2 (12)
D—H···AD—HH···AD···AD—H···A
O5W—H5A···O3iv0.83 (1)2.12 (1)2.9468 (16)173 (3)
O5W—H5B···O1iv0.83 (1)2.58 (2)3.3631 (17)158 (3)
O6W—H6A···O10.83 (1)1.95 (1)2.7704 (12)176 (2)
O6W—H6B···O30.83 (1)2.05 (1)2.8660 (11)169 (2)
O7W—H7A···O4v0.83 (1)1.89 (1)2.7252 (11)176 (2)
O7W—H7B···O10Wv0.83 (1)2.09 (1)2.8740 (12)157 (2)
O8W—H8AB···O20.84 (1)1.96 (1)2.7744 (9)166 (1)
O9W—H9A···O10.83 (1)1.99 (1)2.8027 (11)168 (2)
O9W—H9B···O2ii0.83 (1)1.91 (1)2.7259 (11)168 (2)
O10W—H10A···O4v0.83 (1)1.96 (1)2.7672 (11)164 (2)
O10W—H10B···O3vi0.83 (1)2.01 (1)2.8374 (11)174 (2)
Table 1

Selected bond lengths (Å)

Na1—O7W 2.3266 (9)
Na1—O6W 2.3600 (9)
Na1—O22.3650 (9)
Na1—O5W 2.3781 (10)
Na1—O42.4119 (9)
Na2—O9W i 2.3458 (9)
Na2—O6W 2.3520 (9)
Na2—O10W 2.3852 (9)
Na2—O8W 2.3930 (9)
Na2—O7W ii 2.4056 (9)
Na2—O9W 2.5108 (9)
Se1—O21.6857 (7)
Se1—O2iii 1.6857 (7)
Se1—O11.7164 (10)
Se2—O41.6856 (7)
Se2—O4iii 1.6856 (7)
Se2—O31.7202 (10)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5W—H5A⋯O3iv 0.83 (1)2.12 (1)2.9468 (16)173 (3)
O5W—H5B⋯O1iv 0.83 (1)2.58 (2)3.3631 (17)158 (3)
O6W—H6A⋯O10.83 (1)1.95 (1)2.7704 (12)176 (2)
O6W—H6B⋯O30.83 (1)2.05 (1)2.8660 (11)169 (2)
O7W—H7A⋯O4v 0.83 (1)1.89 (1)2.7252 (11)176 (2)
O7W—H7B⋯O10W v 0.83 (1)2.09 (1)2.8740 (12)157 (2)
O8W—H8AB⋯O20.84 (1)1.96 (1)2.7744 (9)166 (1)
O9W—H9A⋯O10.83 (1)1.99 (1)2.8027 (11)168 (2)
O9W—H9B⋯O2ii 0.83 (1)1.91 (1)2.7259 (11)168 (2)
O10W—H10A⋯O4v 0.83 (1)1.96 (1)2.7672 (11)164 (2)
O10W—H10B⋯O3vi 0.83 (1)2.01 (1)2.8374 (11)174 (2)

Symmetry codes: (ii) ; (iv) ; (v) ; (vi) .

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