Literature DB >> 26279865

Crystal structure of high-spin tetra-aqua-bis-(2-chloro-pyrazine-κN (4))iron(II) bis-(4-methyl-benzene-sulfonate).

Bohdan O Golub1, Sergii I Shylin1, Sebastian Dechert2, Maria L Malysheva1, Il'ya A Gural'skiy1.   

Abstract

The title salt, n class="Chemical">[Fe(II)(C4H3ClN2)2(H2O)4](C7H7O3S)2, contains a complex cation with point group symmetry 2/m. The high-spin Fe(II) cation is hexa-coordinated by four symmetry-related water and two N-bound 2-chloro-pyrazine mol-ecules in a trans arrangement, forming a distorted FeN2O4 octa-hedron. The three-dimensional supra-molecular structure is supported by inter-molecular O-H⋯O hydrogen bonds between the complex cations and tosyl-ate anions, and additional π-π inter-actions between benzene and pyrazine rings. The methyl H atoms of the tosyl-ate anion are equally disordered over two positions.

Entities:  

Keywords:  2-chloro­pyrazine; crystal structure; hydrogen bonding; iron(II) complex; π–π contacts

Year:  2015        PMID: 26279865      PMCID: PMC4518969          DOI: 10.1107/S2056989015010713

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Transition metal n class="Chemical">complexes containing pyrazine or substituted pyrazines as ligands are of current inter­est due to their supra­molecular arrangements and the probability of being spin-crossover compounds. Spin crossover, sometimes referred to as a spin transition or a spin equilibrium behaviour, is a phenomenon that occurs in some metal complexes wherein the spin state of a compound changes via influence of external stimuli such as temperature, pressure, light irradiation, magnetic field or guest effects (Gütlich & Goodwin, 2004 ▸). As a result of the appearance of such features as thermochromic effects, magnetic susceptibility changes, changes of cell volume, etc. that accompany the mol­ecular switching between high-spin and low-spin states, they can be applied in the development of micro-thermometers and photonic devices (Gural’skiy et al., 2012 ▸). Aromatic ligands bearing two or more N atoms are known for their ability to form different n class="Chemical">coordination polymers and mol­ecular complexes. Thus, a number of mononuclear high-spin FeII complexes with substituted pyrazines have been reported recently (Shylin et al., 2015 ▸). These heterocyclic ligands are also known for their ability to create three-dimensional metal-organic framework structures, so called analogues of Hofmann clathrates with general formula {Fe(L)[M(CN)]}∞ where M = Ni, Pd, Pt, etc. Series of thio­cyanato coordination polymers [M(NCS)2 L 2]∞ (with M = Mn, Fe, Co, Ni, and L = pyrazine) in which the small-sized thiocyanate anions are terminally N-bound and therefore not involved in any magnetic exchange interactions are also known (Wriedt & Näther, 2011 ▸). Although 2-chloro­pyrazine could possess a N,N′-manner of coordination, it is frequently found to act as a monodentate ligand due to the bulky chlorine atom being in direct proximity to one of the nitro­gen atoms (Wöhlert & Näther, 2013 ▸). In this paper, we report on the crystal structure of [FeII(C4H3ClN2)2(H2O)4](C7H7O3S)2 n class="Chemical">containing a cationic iron(II) complex with 2-chloro­pyrazine and aqua ligands, and tosyl­ate as an anion.

Structural commentary

The structure of the title compound n class="Chemical">consists of a complex cation [Fe(2-chloro­pyrazine)2(H2O)4]2+ and two tosyl­ate anions. The FeII atom, located on a special position with site symmetry 2/m, is sixfold coordinated by two N atoms of two symmetry-related 2-chloro­pyrazine ligands occupying the axial positions and four O atoms of four H2O mol­ecules forming the equatorial plane (Fig. 1 ▸). The distances between FeII and the O atoms [2.1004 (14) Å] of the H2O mol­ecules are significantly shorter than those between FeII and N [2.200 (2) Å] atoms of the two 2-chloro­pyrazine ligands, hence the resulting FeO4N2 octa­hedron is distorted. The metal-to-ligand distances clearly signalize the high-spin nature of the complex described in here (Shylin et al., 2015 ▸). Similar structural features have been reported for other related compounds (Shylin et al., 2013 ▸). The angles between the coordinating O atoms [O1i—Fe1—O1iii = 90.83 (11)°; for symmetry codes see caption to Fig. 1 ▸], and coordinating N and O atoms [O1ii—Fe1—N1 = 90.68 (5)°] indicate only a small angular distortion.
Figure 1

The structure of the cationic and anionic components in the title salt. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are indicated by dashed lines. [Symmetry codes: (i) 1 − x, −y, 1 − z; (ii) 1 − x, y, 1 − z; (iii) x, −y, z; (iv) x, 1 − y, z; (v) 1 − x, −1 + y, 1 − z.]

Supra­molecular features

In the title compound, the crystal packing is stabilized by O1—H1A⋯O2 and O1—n class="Gene">H1B⋯O3i hydrogen bonds (Table 1 ▸) between the complex cations and the counter-anions (Figs. 1 ▸ and 2 ▸). Only two O atoms of the tosyl­ate anion are involved in hydrogen bonding. Additional π –π stacking inter­actions (for numerical details, see: Table 2 ▸) between the pyrazine and benzene rings of the tosyl­ate anion contribute to the stabilization (Fritsky et al., 2004 ▸) of the three-dimensional network (Fig. 2 ▸).
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1AO20.82(2)1.91(2)2.7238(19)171(4)
O1H1BO3i 0.81(2)1.95(2)2.7624(19)177(3)

Symmetry code: (i) .

Figure 2

The crystal structure of the title compound, showing hydrogen bonds as dashed cyan lines and π–π contacts as green lines. Colour key: orange Fe, yellow S, blue N, grey C, green Cl, red O and white H.

Table 2

Geometric parameters of stacking (, )

centroid (2-chloropyrazine)centroid (tosylate anion)3.7098(1)
centroid (2-chloropyrazine)centroid (tosylate anion)centroid (2-chloropyrazine)130.283(1)

Synthesis and crystallization

Crystals of the title compound were obtained by adding 2-chloro­n class="Chemical">pyrazine (0.046 g, 0.4 mmol) to Fe(OTs)2·6H2O (0.096 g, 0.2 mmol) (OTs = p-toluene­sulfonate) and ascorbic acid (0.001 g) in water (5 ml). After seven days this yielded colourless blocks of the title compound that were collected, washed with water and dried in air. Yield 0.090 g (64%).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. All non-n class="Chemical">water H atoms were positioned geometrically and allowed to ride on their parent atoms, with d(C—H) = 0.95 Å for aromatic and 0.98 Å for CH3 hydrogen atoms. Because of the symmetry of the complete complex cation, methyl H atoms were modelled as equally disordered over two sets of sites. The H atoms of the water mol­ecule were located from a difference Fourier map and were modelled with a common isotropic displacement parameter fixed at 0.08 Å2. The O—H bonds lengths were constrained to 0.82 Å. The U iso values were constrained to be 1.5U eq of the carrier atom for methyl H atoms and 1.2U eq for the remaining H atoms.
Table 3

Experimental details

Crystal data
Chemical formula[Fe(C4H3ClN2)2(H2O)4](C7H7O3S)2
M r 699.35
Crystal system, space groupMonoclinic, C2/m
Temperature (K)133
a, b, c ()30.691(3), 6.7321(3), 6.9435(6)
()99.811(7)
V (3)1413.63(19)
Z 2
Radiation typeMo K
(mm1)0.93
Crystal size (mm)0.26 0.14 0.06
 
Data collection
DiffractometerStoe IPDS II
Absorption correctionNumerical (X-RED; Stoe Cie, 2002)
T min, T max 0.697, 0.925
No. of measured, independent and observed [I > 2(I)] reflections9102, 1630, 1380
R int 0.066
(sin /)max (1)0.633
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.028, 0.067, 1.00
No. of reflections1630
No. of parameters126
No. of restraints2
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
max, min (e 3)0.38, 0.36

Computer programs: X-AREA and X-RED (Stoe Cie, 2002 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015010713/wm5168sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015010713/wm5168Isup2.hkl CCDC reference: 1404715 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Fe(C4H3ClN2)2(H2O)4](C7H7O3S)2F(000) = 720
Mr = 699.35Dx = 1.643 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
a = 30.691 (3) ÅCell parameters from 9102 reflections
b = 6.7321 (3) Åθ = 1.4–26.7°
c = 6.9435 (6) ŵ = 0.93 mm1
β = 99.811 (7)°T = 133 K
V = 1413.63 (19) Å3Block, colourless
Z = 20.26 × 0.14 × 0.06 mm
Stoe IPDS II diffractometer1380 reflections with I > 2σ(I)
φ scans and ω scans with κ offsetRint = 0.066
Absorption correction: numerical (X-RED; Stoe & Cie, 2002)θmax = 26.7°, θmin = 1.4°
Tmin = 0.697, Tmax = 0.925h = −38→38
9102 measured reflectionsk = −8→6
1630 independent reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0395P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
1630 reflectionsΔρmax = 0.38 e Å3
126 parametersΔρmin = −0.35 e Å3
2 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Fe10.50000.00000.50000.01386 (13)
Cl10.68495 (2)0.00000.84806 (9)0.02791 (16)
O10.51119 (5)0.2190 (3)0.7183 (2)0.0399 (4)
N10.57111 (7)0.00000.4870 (3)0.0161 (4)
N20.66150 (7)0.00000.4683 (3)0.0206 (4)
C10.60191 (8)0.00000.6491 (3)0.0171 (5)
H10.59320.00000.77410.021*
C20.64619 (8)0.00000.6350 (3)0.0184 (5)
C30.58590 (8)0.00000.3161 (3)0.0192 (5)
H30.56520.00000.19770.023*
C40.63061 (8)0.00000.3081 (3)0.0211 (5)
H40.63960.00000.18390.025*
S10.41620 (2)0.50000.91435 (8)0.01630 (14)
O20.45581 (6)0.50000.8231 (2)0.0206 (4)
O30.41275 (4)0.32011 (19)1.02718 (16)0.0237 (3)
C50.37118 (8)0.50000.7189 (3)0.0165 (5)
C60.32788 (8)0.50000.7567 (3)0.0223 (5)
H60.32260.50000.88760.027*
C70.29303 (8)0.50000.6040 (4)0.0239 (5)
H70.26370.50000.63080.029*
C80.29970 (8)0.50000.4102 (3)0.0205 (5)
C90.34283 (8)0.50000.3749 (3)0.0211 (5)
H90.34800.50000.24380.025*
C100.37849 (8)0.50000.5263 (3)0.0188 (5)
H100.40780.50000.49930.023*
C110.26090 (9)0.50000.2452 (4)0.0283 (6)
H11A0.23510.44240.29040.042*0.5
H11B0.26810.42090.13640.042*0.5
H11C0.25420.63670.20130.042*0.5
H1A0.4925 (10)0.299 (5)0.740 (5)0.080*
H1B0.5338 (8)0.251 (5)0.791 (4)0.080*
U11U22U33U12U13U23
Fe10.0130 (2)0.0152 (2)0.0129 (2)0.0000.00075 (16)0.000
Cl10.0162 (3)0.0456 (4)0.0203 (3)0.000−0.0017 (2)0.000
O10.0192 (7)0.0481 (10)0.0481 (9)0.0068 (7)−0.0063 (6)−0.0343 (7)
N10.0165 (10)0.0157 (10)0.0159 (9)0.0000.0021 (7)0.000
N20.0182 (10)0.0241 (11)0.0202 (9)0.0000.0051 (8)0.000
C10.0183 (12)0.0194 (12)0.0139 (10)0.0000.0033 (9)0.000
C20.0178 (12)0.0194 (12)0.0168 (10)0.000−0.0002 (9)0.000
C30.0212 (13)0.0210 (12)0.0155 (10)0.0000.0032 (9)0.000
C40.0216 (13)0.0255 (13)0.0170 (11)0.0000.0054 (9)0.000
S10.0149 (3)0.0189 (3)0.0142 (3)0.000−0.0001 (2)0.000
O20.0143 (8)0.0235 (9)0.0240 (8)0.0000.0030 (7)0.000
O30.0224 (7)0.0263 (7)0.0203 (6)−0.0031 (5)−0.0025 (5)0.0066 (5)
C50.0163 (12)0.0173 (11)0.0155 (10)0.0000.0014 (9)0.000
C60.0190 (13)0.0338 (15)0.0139 (10)0.0000.0025 (9)0.000
C70.0138 (12)0.0354 (15)0.0229 (12)0.0000.0040 (9)0.000
C80.0183 (12)0.0234 (13)0.0181 (11)0.000−0.0018 (9)0.000
C90.0211 (13)0.0268 (13)0.0153 (11)0.0000.0028 (9)0.000
C100.0176 (12)0.0223 (12)0.0171 (10)0.0000.0046 (9)0.000
C110.0217 (13)0.0391 (16)0.0216 (12)0.000−0.0030 (10)0.000
Fe1—O1i2.1004 (14)S1—O21.4632 (17)
Fe1—O1ii2.1004 (14)S1—O3iv1.4560 (12)
Fe1—O1iii2.1004 (14)S1—O31.4560 (12)
Fe1—O12.1004 (14)S1—C51.764 (2)
Fe1—N1i2.200 (2)C5—C61.398 (3)
Fe1—N12.200 (2)C5—C101.393 (3)
Cl1—C21.733 (2)C6—H60.9500
O1—H1A0.820 (18)C6—C71.372 (3)
O1—H1B0.814 (18)C7—H70.9500
N1—C11.341 (3)C7—C81.395 (3)
N1—C31.341 (3)C8—C91.387 (3)
N2—C21.321 (3)C8—C111.506 (3)
N2—C41.333 (3)C9—H90.9500
C1—H10.9500C9—C101.383 (3)
C1—C21.379 (3)C10—H100.9500
C3—H30.9500C11—H11A0.9800
C3—C41.383 (4)C11—H11B0.9800
C4—H40.9500C11—H11C0.9800
O1i—Fe1—O1iii90.83 (11)N2—C4—H4118.8
O1i—Fe1—O1180.0C3—C4—H4118.8
O1iii—Fe1—O189.17 (11)O2—S1—C5105.44 (10)
O1iii—Fe1—O1ii180.0O3iv—S1—O2112.02 (6)
O1i—Fe1—O1ii89.17 (11)O3—S1—O2112.02 (6)
O1ii—Fe1—O190.83 (11)O3—S1—O3iv112.56 (10)
O1iii—Fe1—N189.32 (5)O3—S1—C5107.14 (7)
O1ii—Fe1—N1i89.32 (5)O3iv—S1—C5107.14 (7)
O1i—Fe1—N1i89.32 (5)C6—C5—S1120.03 (17)
O1ii—Fe1—N190.68 (5)C10—C5—S1120.37 (18)
O1—Fe1—N189.32 (5)C10—C5—C6119.6 (2)
O1i—Fe1—N190.68 (5)C5—C6—H6120.1
O1iii—Fe1—N1i90.68 (5)C7—C6—C5119.7 (2)
O1—Fe1—N1i90.68 (5)C7—C6—H6120.1
N1i—Fe1—N1180.0C6—C7—H7119.3
Fe1—O1—H1A124 (3)C6—C7—C8121.5 (2)
Fe1—O1—H1B131 (2)C8—C7—H7119.3
H1A—O1—H1B105 (3)C7—C8—C11120.5 (2)
C1—N1—Fe1121.88 (15)C9—C8—C7118.2 (2)
C1—N1—C3116.5 (2)C9—C8—C11121.4 (2)
C3—N1—Fe1121.60 (16)C8—C9—H9119.3
C2—N2—C4115.0 (2)C10—C9—C8121.4 (2)
N1—C1—H1119.9C10—C9—H9119.3
N1—C1—C2120.2 (2)C5—C10—H10120.2
C2—C1—H1119.9C9—C10—C5119.6 (2)
N2—C2—Cl1116.93 (19)C9—C10—H10120.2
N2—C2—C1124.4 (2)C8—C11—H11A109.5
C1—C2—Cl1118.71 (18)C8—C11—H11B109.5
N1—C3—H3119.2C8—C11—H11C109.5
N1—C3—C4121.6 (2)H11A—C11—H11B109.5
C4—C3—H3119.2H11A—C11—H11C109.5
N2—C4—C3122.4 (2)H11B—C11—H11C109.5
Fe1—N1—C1—C2180.000 (1)O2—S1—C5—C100.000 (1)
Fe1—N1—C3—C4180.000 (1)O3iv—S1—C5—C6−60.51 (6)
N1—C1—C2—Cl1180.000 (1)O3—S1—C5—C660.51 (6)
N1—C1—C2—N20.000 (1)O3iv—S1—C5—C10119.49 (6)
N1—C3—C4—N20.000 (1)O3—S1—C5—C10−119.49 (6)
C1—N1—C3—C40.000 (1)C5—C6—C7—C80.000 (1)
C2—N2—C4—C30.000 (1)C6—C5—C10—C90.000 (1)
C3—N1—C1—C20.000 (1)C6—C7—C8—C90.000 (1)
C4—N2—C2—Cl1180.000 (1)C6—C7—C8—C11180.000 (1)
C4—N2—C2—C10.000 (1)C7—C8—C9—C100.000 (1)
S1—C5—C6—C7180.000 (1)C8—C9—C10—C50.000 (1)
S1—C5—C10—C9180.000 (1)C10—C5—C6—C70.000 (1)
O2—S1—C5—C6180.000 (1)C11—C8—C9—C10180.000 (1)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O20.82 (2)1.91 (2)2.7238 (19)171 (4)
O1—H1B···O3v0.81 (2)1.95 (2)2.7624 (19)177 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

3.  Pyridinium bis-(pyridine-κN)tetra-kis-(thio-cyanato-κN)ferrate(III)-pyrazine-2-carbo-nitrile-pyridine (1/4/1).

Authors:  Sergii I Shylin; Il'ya A Gural'skiy; Matti Haukka; Irina A Golenya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.