Literature DB >> 26274812

Toward Relatively General and Accurate Quantum Chemical Predictions of Solid-State (17)O NMR Chemical Shifts in Various Biologically Relevant Oxygen-Containing Compounds.

Amber Rorick1, Matthew A Michael1, Liu Yang1, Yong Zhang1.   

Abstract

Oxygen is an important element in most biologically significant molecules, and experimental solid-state (17)O NMR studies have provided numerous useful structural probes to study these systems. However, computational predictions of solid-state (17)O NMR chemical shift tensor properties are still challenging in many cases, and in particular, each of the prior computational works is basically limited to one type of oxygen-containing system. This work provides the first systematic study of the effects of geometry refinement, method, and basis sets for metal and nonmetal elements in both geometry optimization and NMR property calculations of some biologically relevant oxygen-containing compounds with a good variety of XO bonding groups (X = H, C, N, P, and metal). The experimental range studied is of 1455 ppm, a major part of the reported (17)O NMR chemical shifts in organic and organometallic compounds. A number of computational factors toward relatively general and accurate predictions of (17)O NMR chemical shifts were studied to provide helpful and detailed suggestions for future work. For the studied kinds of oxygen-containing compounds, the best computational approach results in a theory-versus-experiment correlation coefficient (R(2)) value of 0.9880 and a mean absolute deviation of 13 ppm (1.9% of the experimental range) for isotropic NMR shifts and an R(2) value of 0.9926 for all shift-tensor properties. These results shall facilitate future computational studies of (17)O NMR chemical shifts in many biologically relevant systems, and the high accuracy may also help the refinement and determination of active-site structures of some oxygen-containing substrate-bound proteins.

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Year:  2015        PMID: 26274812      PMCID: PMC4583422          DOI: 10.1021/acs.jpcb.5b06536

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  25 in total

Review 1.  A review of oxygen-17 solid-state NMR of organic materials--towards biological applications.

Authors:  V Lemaître; M E Smith; A Watts
Journal:  Solid State Nucl Magn Reson       Date:  2004 Nov-Dec       Impact factor: 2.293

2.  Oxygen-17 NMR spectroscopy: basic principles and applications. Part II.

Authors:  Ioannis P Gerothanassis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-02-13       Impact factor: 9.795

3.  Benchmarking density-functional theory calculations of NMR shielding constants and spin-rotation constants using accurate coupled-cluster calculations.

Authors:  Andrew M Teale; Ola B Lutnæs; Trygve Helgaker; David J Tozer; Jürgen Gauss
Journal:  J Chem Phys       Date:  2013-01-14       Impact factor: 3.488

4.  Combined first-principles computational and experimental multinuclear solid-state NMR investigation of amino acids.

Authors:  Christel Gervais; Ray Dupree; Kevin J Pike; Christian Bonhomme; Mickaël Profeta; Chris J Pickard; Francesco Mauri
Journal:  J Phys Chem A       Date:  2005-08-11       Impact factor: 2.781

5.  Influence of N-H...O and C-H...O hydrogen bonds on the 17O NMR tensors in crystalline uracil: computational study.

Authors:  Ramsey Ida; Maurice De Clerk; Gang Wu
Journal:  J Phys Chem A       Date:  2006-01-26       Impact factor: 2.781

6.  Probing hydrogen bonding and ion-carbonyl interactions by solid-state 17O NMR spectroscopy: G-ribbon and G-quartet.

Authors:  Irene C M Kwan; Xin Mo; Gang Wu
Journal:  J Am Chem Soc       Date:  2007-02-02       Impact factor: 15.419

7.  Solid-state NMR, crystallographic, and computational investigation of bisphosphonates and farnesyl diphosphate synthase-bisphosphonate complexes.

Authors:  Junhong Mao; Sujoy Mukherjee; Yong Zhang; Rong Cao; John M Sanders; Yongcheng Song; Yonghui Zhang; Gary A Meints; Yi Gui Gao; Dushyant Mukkamala; Michael P Hudock; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2006-11-15       Impact factor: 15.419

8.  Combined ab initio computational and experimental multinuclear solid-state magnetic resonance study of phenylphosphonic acid.

Authors:  Christel Gervais; Mickaël Profeta; Vincent Lafond; Christian Bonhomme; Thierry Azaïs; Hubert Mutin; Chris J Pickard; Francesco Mauri; Florence Babonneau
Journal:  Magn Reson Chem       Date:  2004-05       Impact factor: 2.447

9.  17O quadrupole coupling and chemical shielding tensors in an H-bonded carboxyl group: alpha-oxalic acid.

Authors:  Qianwen Zhang; Eduard Y Chekmenev; Richard J Wittebort
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Experimental and theoretical 17O NMR study of the influence of hydrogen-bonding on C=O and O-H oxygens in carboxylic solids.

Authors:  Alan Wong; Kevin J Pike; Rob Jenkins; Guy J Clarkson; Tiit Anupõld; Andrew P Howes; David H G Crout; Ago Samoson; Ray Dupree; Mark E Smith
Journal:  J Phys Chem A       Date:  2006-02-09       Impact factor: 2.781

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  1 in total

1.  Benchmark fragment-based (1)H, (13)C, (15)N and (17)O chemical shift predictions in molecular crystals.

Authors:  Joshua D Hartman; Ryan A Kudla; Graeme M Day; Leonard J Mueller; Gregory J O Beran
Journal:  Phys Chem Chem Phys       Date:  2016-07-19       Impact factor: 3.676

  1 in total

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