Literature DB >> 17269776

Probing hydrogen bonding and ion-carbonyl interactions by solid-state 17O NMR spectroscopy: G-ribbon and G-quartet.

Irene C M Kwan1, Xin Mo, Gang Wu.   

Abstract

We report solid-state 17O NMR determination of the 17O NMR tensors for the keto carbonyl oxygen (O6) of guanine in two 17O-enriched guanosine derivatives: [6-17O]guanosine (G1) and 2',3',5'-O-triacetyl-[6-17O]guanosine (G2). In G1.2H2O, guanosine molecules form hydrogen-bonded G-ribbons where the guanine bases are linked by O6...H-N2 and N7...H-N7 hydrogen bonds in a zigzag fashion. In addition, the keto carbonyl oxygen O6 is also weakly hydrogen-bonded to two water molecules of hydration. The experimental 17O NMR tensors determined for the two independent molecules in the asymmetric unit of G1.2H2O are: Molecule A, CQ=7.8+/-0.1 MHz, etaQ=0.45+/-0.05, deltaiso=263+/-2, delta11=460+/-5, delta22=360+/-5, delta33=-30+/-5 ppm; Molecule B, CQ=7.7+/-0.1 MHz, etaQ=0.55+/-0.05, deltaiso=250+/-2, delta11=440+/-5, delta22=340+/-5, delta33=-30+/-5 ppm. In G1/K+ gel, guanosine molecules form extensively stacking G-quartets. In each G-quartet, four guanine bases are linked together by four pairs of O6...H-N1 and N7...H-N2 hydrogen bonds in a cyclic fashion. In addition, each O6 atom is simultaneously coordinated to two K+ ions. For G1/K+ gel, the experimental 17O NMR tensors are: CQ=7.2+/-0.1 MHz, etaQ=0.68+/-0.05, deltaiso=232+/-2, delta11=400+/-5, delta22=300+/-5, delta33=-20+/-5 ppm. In the presence of divalent cations such as Sr2+, Ba2+, and Pb2+, G2 molecules form discrete octamers containing two stacking G-quartets and a central metal ion, that is, (G2)4-M2+-(G2)4. In this case, each O6 atom of the G-quartet is coordinated to only one metal ion. For G2/M2+ octamers, the experimental 17O NMR parameters are: Sr2+, CQ=6.8+/-0.1 MHz, etaQ=1.00+/-0.05, deltaiso=232+/-2 ppm; Ba2+, CQ=7.0+/-0.1 MHz, etaQ=0.68+/-0.05, deltaiso=232+/-2 ppm; Pb2+, CQ=7.2+/-0.1 MHz, etaQ=1.00+/-0.05, deltaiso=232+/-2 ppm. We also perform extensive quantum chemical calculations for the 17O NMR tensors in both G-ribbons and G-quartets. Our results demonstrate that the 17O chemical shift tensor and quadrupole coupling tensor are very sensitive to the presence of hydrogen bonding and ion-carbonyl interactions. Furthermore, the effect from ion-carbonyl interactions is several times stronger than that from hydrogen-bonding interactions. Our results establish a basis for using solid-state 17O NMR as a probe in the study of ion binding in G-quadruplex DNA and ion channel proteins.

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Year:  2007        PMID: 17269776     DOI: 10.1021/ja067991m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Toward Relatively General and Accurate Quantum Chemical Predictions of Solid-State (17)O NMR Chemical Shifts in Various Biologically Relevant Oxygen-Containing Compounds.

Authors:  Amber Rorick; Matthew A Michael; Liu Yang; Yong Zhang
Journal:  J Phys Chem B       Date:  2015-08-19       Impact factor: 2.991

2.  High-Resolution 17O NMR Spectroscopy of Structural Water.

Authors:  Eric G Keeler; Vladimir K Michaelis; Christopher B Wilson; Ivan Hung; Xiaoling Wang; Zhehong Gan; Robert G Griffin
Journal:  J Phys Chem B       Date:  2019-04-01       Impact factor: 2.991

3.  Structural Insights into Bound Water in Crystalline Amino Acids: Experimental and Theoretical (17)O NMR.

Authors:  Vladimir K Michaelis; Eric G Keeler; Ta-Chung Ong; Kimberley N Craigen; Susanne Penzel; John E C Wren; Scott Kroeker; Robert G Griffin
Journal:  J Phys Chem B       Date:  2015-06-10       Impact factor: 2.991

4.  "One ring to bind them all"-part I: the efficiency of the macrocyclic scaffold for g-quadruplex DNA recognition.

Authors:  David Monchaud; Anton Granzhan; Nicolas Saettel; Aurore Guédin; Jean-Louis Mergny; Marie-Paule Teulade-Fichou
Journal:  J Nucleic Acids       Date:  2010-05-24

5.  17O MAS NMR Correlation Spectroscopy at High Magnetic Fields.

Authors:  Eric G Keeler; Vladimir K Michaelis; Michael T Colvin; Ivan Hung; Peter L Gor'kov; Timothy A Cross; Zhehong Gan; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-11-30       Impact factor: 15.419

6.  (17)O NMR Investigation of Water Structure and Dynamics.

Authors:  Eric G Keeler; Vladimir K Michaelis; Robert G Griffin
Journal:  J Phys Chem B       Date:  2016-08-09       Impact factor: 2.991

7.  Solid-state 17O NMR study of α-d-glucose: exploring new frontiers in isotopic labeling, sensitivity enhancement, and NMR crystallography.

Authors:  Jiahui Shen; Victor Terskikh; Jochem Struppe; Alia Hassan; Martine Monette; Ivan Hung; Zhehong Gan; Andreas Brinkmann; Gang Wu
Journal:  Chem Sci       Date:  2022-01-03       Impact factor: 9.825

  7 in total

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