Lizhen Han1, Degang Zhao1, Cuicui Li2. 1. The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region, Ministry of Education, Guiyang, China, The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region, Ministry of Education, Guiyang, China. ; Guizhou University, College of Life Sciences, Guizhou University, Guiyang, China, College of Life Sciences, Guizhou University, Guiyang, China. ; Guizhou University, Institute of Agro-Bioengineering, Guizhou University, Guiyang, China, Institute of Agro-Bioengineering, Guizhou University, Guiyang, China. 2. Guizhou University, College of Life Sciences, Guizhou University, Guiyang, China, College of Life Sciences, Guizhou University, Guiyang, China. ; Guizhou University, Institute of Agro-Bioengineering, Guizhou University, Guiyang, China, Institute of Agro-Bioengineering, Guizhou University, Guiyang, China.
Abstract
An indigenous bacterial strain capable of utilizing 2,4-dichlorophenoxyacetic acid as the sole carbon and energy source was isolated from a soil used for grown wheat with a long-term history of herbicide use in Beijing, China. The strain BJ71 was identified as Cupriavidus campinensis based on its 16S rRNA sequence analysis and morphological, physiological, and biochemical characteristics. The degradation characteristics of strain BJ71 were evaluated. The optimal conditions for 2,4-D degradation were as follows: pH 7.0, 30 °C, 3% (v/v) inoculum size, and an initial 2,4-D concentration of 350 mg L(-1). Up to 99.57% of the 2,4-D was degraded under optimal conditions after 6 days of incubation. Strain BJ71 was also able to degrade quizalofop and fluroxypyr. This is the first report of a 2,4-D-degrader containing tfdA gene that can utilize these two herbicides. In a biodegradation experiment, 87.13% and 42.53% of 2,4-D (initial concentration, 350 mg kg(-1)) was degraded in non-sterile and sterilized soil inoculated with BJ71, respectively, after 14 days. The 2,4-D degradation was more rapid in a soil microcosm including BJ71 than in a soil microcosm without BJ71. These results indicate that strain BJ71 is a potential candidate for the bioremediation of soil contaminated with the herbicide 2,4-D.
An indigenous bacterial strain capable of utilizing 2,4-dichlorophenoxyacetic acid as the sole carbon and energy source was isolated from a soil used for grown wheat with a long-term history of herbicide use in Beijing, China. The strain BJ71 was identified as Cupriavidus campinensis based on its 16S rRNA sequence analysis and morphological, physiological, and biochemical characteristics. The degradation characteristics of strain BJ71 were evaluated. The optimal conditions for 2,4-D degradation were as follows: pH 7.0, 30 °C, 3% (v/v) inoculum size, and an initial 2,4-D concentration of 350 mg L(-1). Up to 99.57% of the 2,4-D was degraded under optimal conditions after 6 days of incubation. Strain BJ71 was also able to degrade quizalofop and fluroxypyr. This is the first report of a 2,4-D-degrader containing tfdA gene that can utilize these two herbicides. In a biodegradation experiment, 87.13% and 42.53% of 2,4-D (initial concentration, 350 mg kg(-1)) was degraded in non-sterile and sterilized soil inoculated with BJ71, respectively, after 14 days. The 2,4-D degradation was more rapid in a soil microcosm including BJ71 than in a soil microcosm without BJ71. These results indicate that strain BJ71 is a potential candidate for the bioremediation of soil contaminated with the herbicide 2,4-D.
The post-emergence systemic herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) has been
widely used to control dicotyledonous weeds in cereal and grass crops for more than
60 years. Although this herbicide has a short half-life in soil and aquatic
environments, its extensive use is a cause for concern because of the potential
threat to the environment and human health (Chinalia
). The WHO (World Health Organization)
has classified 2,4-D as a hormonal herbicide with level II toxicity. It is
considered to be a carcinogenic agent affecting the liver and heart. It also affects
the central nervous system, leading to convulsions (Garc'a ; Maloney and Waxman, 1999). Because of the relatively high water
solubility and low soil-absorption coefficient of the free acid of 2,4-D, it often
contaminates the environment when it enters streams, rivers, or lakes after drainage
of agricultural lands (Chinalia and Killham,
2006; El-Bestawy and Hans-Jorgen,
2007; Lane, 1991). Most of the
2,4-D-degrading bacteria characterized to date are members of genera belonging to
the β and γ subdivisions of the class Proteobacteria, and have been isolated from
2,4-D-treated environments (Gonzalez ; Kamagata
; Lee
). The best-described pathway for 2,4-D
degradation is the plasmid-encoded pathway of the bacterium Ralstonia
eutropha (formerly Alcaligenes eutrophus,
Waustersia eutropha) strain JMP134 (Fukumori and Hausinger, 1993a; Fukumori and Hausinger, 1993b; Streber ). Despite the many
attempts to increase the biodegradation of 2,4-D by bioaugmentation of soils with
degrading strains, no significant increases in pollutant removal compared with that
in uninoculated soil have been achieved (Sánchez et al., 1994). The
introduced strains do not always survive well in the soil environment because of
various stresses, including competition with indigenous microorganisms (Manzano ; Marrón-Montiel ).
For successful bioremediation of herbicide-contaminated soil, it is necessary to
construct a unique niche for the desired microbes so that they can be productively
exploited (Singh, 2008). Hence, the use of
native 2,4-D degrading microorganisms is a feasible strategy for the bioremediation
of polluted sites. The purpose of this study was to isolate an indigenous 2,4-D
degrading strain using enrichment techniques, and to evaluate the degradation
characteristics of the strain under different conditions. Our long-term goal is to
isolate and characterize an indigenous 2,4-D degrading strain for bioaugmentation
during in situ clean-up of sites polluted with 2,4-D in China.
Materials and Methods
Chemicals
2,4-D, 2-methyl-4-chloro-phenoxyacetic acid (MCPA), mecoprop (99% purity), and
eosin B were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ringers solution
was purchased from Oxoid (Basingstoke, UK). Quizalofop, fluroxypyr, and all
other chemicals were of analytical grade or higher purity.
Enrichment and isolation of 2,4-D-degrading bacteria
Soils used for enrichment of 2,4-D-degrading bacteria were collected from wheat
fields in Beijing (40°25′40″ N, 116°82′79″ E), Henan Province (34°20′34″ N,
114°15′07″ E), and Qinghai Province (36°92′15″ N, 101°67′20″ E), China. These
soils have been exposed to 2,4-D for at least 10 years. Ten grams of each soil
was inoculated into an Erlenmeyer flask (250 mL) containing 100 mL minimal salt
medium (MSM; containing MgSO4 0.2 g L−1,
(NH4)2SO4 0.5 g L−1,
KH2PO4 0.5 g L−1,
K2HPO4 1.5 g L−1, Na2EDTA 0.12 g
L−1, NaOH 0.02 g L−1, ZnSO4 0.004 g
L−1, CuSO4 0.001 g L−1,
Na2SO4 0.0001 g L−1,
Na2MoO4 0.001 g L−1, CoCl2
0.0001 g L−1, MnSO4 0.0004 g L−1, and 0.5 mL
concentrated H2SO4, pH 7.0) (Smejkal ), which was
supplemented with 500 mg L−1 2,4-D as the sole carbon and energy
source. The flasks were incubated at 30 °C for 7 days in a rotary shaker at 150
rpm. Then, 10 mL enrichment culture showing degradation of 2,4-D was transferred
to 100 mL fresh MSM containing 500 mg L−1 2,4-D and further incubated
for 7 days. Four rounds of enrichment were performed and the final enrichment
cultures were serially diluted and spread on MSM plates containing 500 mg
L−1 2,4-D. After incubation at 30 °C for 4 days, single colonies
with different morphologies were selected for further analysis of their
degradation abilities. For each strain, the extent of degradation was determined
by quantifying the amount of 2,4-D remaining in the culture by high-performance
liquid chromatography (HPLC). One strain isolated from Beijing, designated as
BJ71, degraded 2,4-D very quickly and showed the highest degradation rate of
2,4-D among the isolated strains. This strain was selected for further
investigation. Isolates were stored frozen in 15% glycerol at −80 °C until
analysis.
Identification and characterization of strain BJ71
Strain BJ71 was identified based on its 16S rRNA gene sequence analysis and
morphological, physiological, and biochemical tests. Morphological,
physiological, and biochemical tests were conducted according to Bergey's Manual
of Systematic Bacteriology (Garrity ) and related documents (Vandamme and Coenye, 2004; Vaneechoutte ).
Microscopic observation was performed with an HITACHI S3400N scanning electron
microscope (Hitachi, Tokyo, Japan) at 20 kV. Samples were prepared for scanning
electron microscopy by fixing bacterial colonies in 2.5% glutaraldehyde solution
with SEMpore (Hitachi). The samples were lyophilized and coated with gold prior
to microscopic observations. Total genomic DNA was extracted with an E.Z.N.A.
Bacterial DNA Kit (Omega Bio-Tek, Doraville, GA, USA) according to the
manufacturer's instructions. The 16S rRNA genes were amplified from the
extracted genomic DNA using the universal primers 27f
(5′-AGAGTTTGATCMTGGCTCAG-3′) and 1492r (5′-TACGGYTACCTTGTTACGACTT-3′) as
described previously (Lane, 1991). Each
polymerase chain reaction (PCR) mixture contained 1 × Premix Taq (Ex Taq
Version, Takara Bio, Shiga, Japan), 0.4 μM each primer, and ~50 ng template DNA.
The PCR amplification conditions were as follows: 95 °C for 5 min; followed by
35 cycles of 95 °C for 45 s, 55 °C for 45 s, and 72 °C for 90 s. To ensure
complete elongation, a final step of 72 °C for 7 min was performed. Reactions
were performed in a MyCycler Thermocycler (BioRad, Hercules, CA, USA). The PCR
products were sequenced by Takara (Dalian, China). The identification of
phylogenetic neighbors was initially carried out using the BLASTN program
against the database containing type strains with valid published prokaryotic
names, acquired from the EzTaxon-e server (http://eztaxon-e.ezbiocloud.net) (Kim ). Different 16S
rRNA gene sequences from GenBank were aligned using CLUSTALW version 2.0 (Larkin ). A
phylogenetic tree was created using the neighbor-joining method with MEGA5.0
software (Tamura ). A bootstrap analysis based on 1000 replicates was used to
place confidence estimates on the tree.
Growth and 2,4-D-degradation conditions
Strain BJ71 was pre-cultured overnight in Luria-Bertani (LB) medium supplemented
with 500 mg L−1 2,4-D. The cells were harvested by centrifugation at
6,000 g for 5 min, and then washed with sterilized MSM. For all experiments, the
cell concentration of the inoculum was adjusted to an OD420 of 0.1
(corresponding to 4.6 × 107 cells mL−1) when inoculated
into 150 mL MSM (pH 7.0) containing 2,4-D as the sole carbon source in a 250-mL
Erlenmeyer flask. Flasks were incubated with shaking at 150 rpm on a rotary
shaker. For controls, uninoculated media were maintained and tested in the same
manner as described above. Culture samples were extracted at 24-h intervals to
measure cell growth and the amount of 2,4-D remaining, as described below. We
examined the effects of initial 2,4-D concentration (200, 350, 500, 650, and 800
mg L−1), culture temperature (22, 26, 30, and 34 °C), inoculum size
(1%, 3%, 5%, 7%, and 10%), medium pH (5.0, 6.0, 7.0, 8.0, 9.0, and 10.0), and
liquid medium volume (50, 100, 120, 150 mL) on cell growth and 2,4-D
biodegradation. All experiments were independently performed in triplicate. Cell
growth was quantified by measuring the absorbance of the sample at 420 nm using
a Beckman DU640 spectrophotometer (Smejkal
). The degradation rate was
analyzed by determining the amount of 2,4-D remaining in the culture medium by
HPLC. We used a Waters 600 HPLC system equipped with a C18 reverse-phase column
with methanol − 0.1% H3PO4 (60:40) as the eluent. A
decrease in the value of A230 at an elution time of ~5.5 min
indicated 2,4-D metabolism. A standard curve of 2,4-D was used to calculate the
percentage of degradation. Cultures were preprocessed according to the method of
Suwa .
Detection of substrate degradation by strain BJ71
Strain BJ71 was precultured to an optical density of 0.6–1.0 (OD420)
and then serially diluted in 1/4 Ringers solution. The 10−5 dilution
of this culture was plated onto modified Loos agar plates containing
(NH4)2SO4 0.1 g L−1, eosin B
0.04 g L−1, yeast extract 0.25 g L−1, Na2EDTA
0.12 g L−1, NaOH 0.02 g L−1, ZnSO4 0.004 g
L−1, CuSO4 0.001 g L−1,
Na2SO4 0.0001 g L−1,
Na2MoO4 0.001 g L−1, CoCl2
0.0001 g L−1, MnSO4 0.0004 g L−1, 0.5 mL
H2SO4, and 10 mL 1% (w/v) alkaline methylene blue
solution. Separate carbon sources (MCPA, mecoprop, quizalofop, or fluroxypyr)
were added at concentrations of 3 mmol L−1. Plates were set up in
triplicate and incubated for 4 days at 25 °C. This method was described by Smejkal ;
2003).
Soil microcosm degradation experiments
Organic agricultural topsoil, classified as a loamy soil with 14% clay, 32% silt,
54% sand, and 2.34% carbon (pH 6.9) was collected from a farm (N 26°25′59″ E
106°40′16″) (Guizhou, China), and then sieved (pore size, 2 mm) and air dried.
The soil had not been exposed to 2,4-D previously. Soil (200 g) was added to
500-mL wide-mouth glass jars covered with aluminum foil. Control soils were
sterilized by autoclaving (121 °C, 20 min) on 3 different days before starting
the microcosm experiments. The soil used in the microcosm experiments was
supplemented with 2,4-D at a final concentration of 350 mg kg−1.
Strain BJ71 was grown at 30 °C in LB with 2,4-D (500 mg L−1),
harvested by centrifugation, washed twice, and then resuspended in sodium
phosphate buffer. The soil samples were incubated for 1 day to equilibrate, and
then inoculated with freshly grown cultures at a cell density of 7 ×
107 cfu g−1 soil. Sterilized controls containing the
same amount of 2,4-D were run simultaneously under identical conditions. After
all amendments were added, the moisture content of soil was adjusted with water
to 75% of the water-holding capacity. The soil was shaken every week to enhance
O2 availability. Soil microcosms were incubated at 30 °C in the
dark to prevent photodegradation of 2,4-D during the 42-day experiment. All
experiments were conducted with three replicates. The concentration of 2,4-D in
the soils was determined by HPLC according to the method of Holben .
Statistical analysis
Data were analyzed using one-way analysis of variance and multiple comparisons
were performed with Duncan's multiple range test using SPSS software for Windows
(version 19.0).
Results
Isolation and screening of 2,4-D-degrading bacterial strains
We isolated 22 strains of 2,4-D-degrading bacteria by picking colonies with
differing morphologies. All the strains were able to utilize 2,4-D as the sole
carbon and energy source. Of the 22 strains, 13 degraded more than 60% of the
initial 2,4-D (500 mg L−1) during 1 week of incubation at 30 °C.
Sequence analyses showed that the genomes of these strains contained the
conserved sequence of a class I tfdA gene (Han ). The BJ71 strain
accumulated the largest biomass and showed the most complete degradation of
2,4-D among these 2,4-D-degrading strains. Therefore, BJ71 was selected for
further investigation.
Identification of strain BJ71
According to the observation of cell morphology and physiological and
biochemicala tests, BJ71 is a motile, Gram-negative rod-shaped bacterium that
forms opalescent colonies (Figure 1) with
oxidase and catalase activities. The bacterium showed positive results in urease
and nitrate reduction tests, but negative results in tests for glucose
fermentation and indole and citrate utilization. The 16S rRNA sequence of strain
BJ71 (1,390 bp) was compared with bacterial 16S rRNA sequences in GenBank.
Phylogenetic neighbors were identified by BLASTN searches against the database
containing type strains with valid published prokaryotic names, acquired from
the EzTaxon-e server. The 16S rRNA gene sequence of strain BJ71 showed 100%
similarity to that of Cupriavidus campinensis WS2T
(GenBank accession nos. AF312020) (Figure
2). C. campinensis is a new species assigned in
2001. A metal-resistant type strain, WS2T, was isolated from a
zinc-desertified area in Belgium (Goris
).
Figure 1
Colonies and cells of strain BJ71. (A) Photograph of BJ71 colonies on
LB agar plate (B) Scanning electron micrograph of BJ71 cells.
Figure 2
NJ tree based on 16S rRNA gene (1,390 bp) sequences showing the
phylogenetic relationship between strain BJ71 and other related species
in genera Ralstonia and Wautersia sp.
GenBank accession number are in parentheses. Bootstrap values are based
on 1,000 resampled datasets. All major branches were conserved in the
maximum-parsimony tree. Burkholderia andropogoni ATCC
23061T (X67037) served as the outgroup. Scale bar
indicates number of nucleotide changes per base position
analyzed.
Based on its 16S rRNA gene sequence analysis and its morphological,
physiological, and biochemical characteristics, strain BJ71 was identified as
Cupriavidus campinensis. The nucleotide sequence of the 16S
rRNA gene of strain BJ71 has been deposited in GenBank under the accession
number KF997830.
Effect of environmental factors on growth and 2,4-D degradation of strain
BJ71
We investigated the effect of different initial 2,4-D concentrations on 2,4-D
degradation by strain BJ71 (Figure 3).
Strain BJ71 degraded 2,4-D quickly at low substrate concentrations (200 and 350
mg L−1), and showed almost complete degradation of 200 mg
L−1 2,4-D in 3 days. When the initial 2,4-D concentration was 350
mg L−1, BJ71 degraded 90% of the 2,4-D after 4 days. BJ71 was also
able to degrade 2,4-D at high concentrations in MSM (94.08% of 500 mg
L−1 and 61% of 800 mg L−1 after 7 days of incubation).
We also investigated the effects of other factors on the 2,4-D degradation rate
of strain BJ71 (Figure 4). Among six
different pHs, pH 7.0 was optimal for 2,4-D degradation by BJ71. This strain was
well-adapted to a wide range of pHs and was able to degrade up to 40% of the
2,4-D at pH 5.0–10.0. Temperature is a major environmental factor affecting
degradation. The biodegradation rate was approximately 8.49% at the highest
temperature tested (34 °C), and 98.98% at 30 °C. The optimum inoculum size was
3.0%. The degradation rate decreased when the inoculum size was too low or too
high because of insufficient inoculum or nutrient limitation, respectively.
There was no significant effect of different medium volumes on the 2,4-D
degradation rate.
Figure 3
Effect of initial 2,4-D concentration on degradation of 2,4-D by
strain BJ71. Incubation conditions were as follows: pH 7.0, final cell
density at 420 nm adjusted to 0.1. Cells were inoculated into 150 mL MSM
(pH 7.0) in a 250-mL flask at 30 °C and grown with shaking at 150 rpm on
a rotary shaker. Standard errors are within 5% of the mean.
Figure 4
Effects of environmental conditions on degradation rate of 2,4-D by
strain BJ71. Effects of pH (a), temperature (b), inoculum size (c), and
medium volume (d) on 2,4-D degradation. For all experiments, final
density of cells at 420 nm was adjusted to 0.1. Cells were inoculated
into 150 mL MSM (pH 7.0) containing 350 mg L−1 2,4-D in a
250-mL Erlenmeyer flask before incubation at 30 °C with shaking at 150
rpm, unless otherwise stated. All data were obtained at 120 h of
incubation. Values shown are means of duplicate experiments. Error bars
indicate standard deviation (SD). * indicates significant difference
(Duncan's test, p < 0.05).
The optimal conditions for 2,4-D biodegradation by strain BJ71 were as follows:
initial pH of 7.0, incubation temperature of 30 °C, inoculum size of 3.0% (v/v),
and an initial 2,4-D concentration of 350 mg L−1. The typical growth
of strain BJ71 was consistent with the degradation curves under optimal
conditions (Figure 5). Up to 99.57% of the
2,4-D was degraded by strain BJ71 under these optimum conditions after 6 days of
incubation.
Figure 5
Amount of 2,4-D remaining and cell growth during degradation of 2,4-D
by strain BJ71. Incubation conditions were as follows: pH 7.0, final
cell density at 420 nm adjusted to 0.1. Cells were inoculated into 150
mL MSM (pH 7.0) containing 350 mg L−1 2,4-D in a 250-mL
Erlenmeyer flask at 30 °C and shaker at 150 rpm. Standard errors are
within 5% of the mean.
Analysis of substrate range
It has been reported that growth on Modified Loos medium can reveal microbial
dehalogenation of herbicide compounds, during which there is a cleavage of the
aromatic ring (Smejkal ). BJ71 was grown on this medium supplemented with 3 mmol of
several other herbicides including mecoprop, MCPA, quizalofop, and fluroxypyr.
After 4 days of incubation, dark violet colonies were observed on the plates of
Modified Loos medium containing 2,4-D, quizalofop and fluroxypyr. Therefore,
BJ71 was able to grow on media containing the herbicides quizalofop and
fluroxypyr, but not on media containing MCPA or mecoprop.
Degradation of 2,4-D in soil
We evaluated the patterns of degradation in non-sterilized and sterilized soils,
with and without strain BJ71 (Figure 6).
In non-sterile soil inoculated with strain BJ71, the degradation rate was
markedly higher than in the other treatments after 42 days of incubation at 30
°C. After 14 days of incubation, 87.13% and 42.53% of 2,4-D (initial
concentration of 350 mg kg−1) were degraded in non-sterile and
sterilized soil inoculated with the strain BJ71, respectively. In non-sterile
control without strain BJ71, the removal rate was only 7.34%. There was no
degradation of 2,4-D in control sterilized soil, which contained 350 mg
kg−1 2,4-D but no inoculant (data not shown). The decrease in
2,4-D concentrations in soil lacking BJ71 indicated that other indigenous
microorganisms showed some 2,4-D degrading ability. Strain BJ71 enhanced the
degradation of 2,4-D when present with other indigenous microorganisms in the
soil. The isolated C. campinensisBJ71 strain has been
deposited in the China Centre for Type Culture Collection (Accession number
CCTCC M 2014006).
Figure 6
Degradation of 350 mg kg−1 2,4-D in soil inoculated with
strain BJ71. Soil in microcosm degradation experiments contained 2,4-D
at 350 mg L−1, and was inoculated with BJ71 at a cell density
of 7 × 107 cfu g−1 soil. Soil microcosms were
incubated at 30 °C for 42 days in darkness to prevent photodegradation
of 2,4-D. Values shown are the mean of three replicates. Standard errors
are within 5% of mean value.
Discussion
In this study, we isolated an indigenous 2,4-D degrading bacterium from a polluted
wheat field in Beijing, China. The strain was identified as C.
campinensis based on its 16S rRNA gene sequence analysis and its
physiological features. In previous studies, several types of 2,4-D-degrading
bacteria were isolated from 2,4-D-treated environments. These bacteria have been
categorized into three groups based on their degradation enzymes and physiological
properties. The first group consists of copiotrophic bacteria belonging to the β and
γ subdivisions of the class Proteobacteria, and includes species in the genera
Achromobacter, Burkholderia,
Delftia, Halomonas,
Pseudomonas, Ralstonia,
Rhodoferax, and Variovorax. Their
2,4-D-catabolizing enzymes are encoded by genes homologous to tfdA,
which encodes an Fe(II)/α-ketoglutarate-dependent dioxygenase that converts 2,4-D
into 2,4-dichlorophenol. The tfdA gene is initially found in
R. eutropha JMP134 (Gonzalez et al., 201;
Lee , Vallaeys ). The
second group consists of members of the α-Proteobacteria, closely related to
Bradyrhizobium sp. (Itoh
; Kamagata ). Members of the third group are
copiotrophic α-Proteobacteria in the genus Sphingomonas (McGowan ; Suwa ). These
strains, which include Delftia acidovorans MC1,
Rhodoferax sp. P230, and Sphingobium
herbicidovorans MH, contain sdpA or
rdpA genes, which encode products that can cleave enantiomers
of racemic compounds (Mller ; Schleinitz ; Westendorf ). These 2,4-D-degrading isolates have been well characterized in
previous studies. The degradation capacity of strain BJ71 was greater than those
reported for Sphingomonas agrestis strain 58-1 (Shimojo ) and three other
strains; Burkholderia cepaciaDS-1, Pseudomonas
sp. DS-2, and Sphingomonas paucimobilisDS-3 (Cycon ). The 2,4-D
degradation ability of strain BJ71 in medium containing 2,4-D was comparable to
those reported for C. pampae CPDB6T (Cuadrado ) and
Halomonadaceae sp. I-18 (Maltseva ). The 2,4-D degradation
efficiency of strain BJ71 was greater than that of C. necatorJMP134, the most intensively studied chloroaromatic-degrading microorganism to date.
When grown on medium containing 250 mg L−1 of 2,4-D as the sole carbon
and energy source, JMP134 showed a maximum 2,4-D degradation rate of 70% after 10
days of incubation (Lerch ). A Delftia species isolated from a polluted river
in Argentina was able to degrade 200 mg L−1 of 2,4-D in 28 h and remove
99.0% of the pollutant, whereas C. necator EMA-G isolated from
agricultural soil in Argentina degraded 250 mg L−1 2,4-D in less than 1
day (Gonzale ;
Zabaloy and Gómez, 2013). B.
cepacia YK-2 and a strain of P. putida isolated from
the Jordan Valley completely degraded 500 mg L−1 2,4-D within 28 and 45
h, respectively (Cho ; Khalil, 2003). The 2,4-D
degradation efficiency of these strains in shaking culture with higher
concentrations of 2,4-D or in soil microcosms was not reported. In this study, BJ71
in liquid culture showed a degradation rate of up to 60% after 7 days of incubation
when grown on medium containing 800 mg L−1 2,4-D.Many 2,4-D-degrading strains do not have wide substrate specificity for
chlorophenoxyalkanoic herbicides, and are limited to 2,4-D as a growth substrate
(Hoffman ;
Ka ). We
screened an expanded set of structurally related herbicides, and unexpectedly found
that this 2,4-D-degrading C. campinensisBJ71 strain could also
degrade quizalofop and fluroxypyr. The mechanism of action of these herbicides is
entirely different from that of 2,4-D. Quizalofop is in the aryloxyphenoxypropionate
(AOPP) class of potent grass-selective herbicides, and fluroxypyr consists of
pyridyloxyacetate compounds. Wright reported that AAD-1 (synonymous with RdpA in
S. herbicidivorans) has the unique ability to
enantioselectively cleave R-quizalofop, and that AAD-12, (synonymous with SdpA from
D. acidovorans) can degrade fluroxypyr. However, there have
been no other reports in the literature of 2,4-D-degraders containing the
tfdA gene that are able to degrade fluroxypyr and quizalofop.
Recently, we cloned the entire tfdA gene of C.
campinensis strain BJ71 (GenBank accession number: KJ028765). The
sequence of the tfdA gene from C. campinensisBJ71
shows some differences from that of C. necator JMP134 (Han ). To our
knowledge, this is the first report of a 2,4-D degrader containing the
tfdA that can degrade several different synthetic auxins
(2,4-D, fluroxypyr, and the aryloxyphenoxypropionate herbicide quizalofop). Because
of these characteristics, this strain has great potential for bioremediation of
these herbicides in polluted environments.For successful bioremediation, it is important to identify and isolate appropriate
microbial strains, and to ensure their survival and activity after their release
into the target habitat. A key factor in the failure of bioaugmentation strategies
is the rapid decline of the population of introduced cells. The introduced strain
may face intense competition, predation, or parasitism in the natural environment.
The most suitable candidate for bioaugmentation is an autochthonous strain that is
able to survive long-term in the target habitat, and continuously degrade the
contaminant (Ramos ; Thompson ). It has been reported that the batch culture method used to enrich
and isolate bacteria is highly selective for fast-growing copiotrophic microbes, and
that the isolation of Cupriavidus sp. from the most dilute positive
MPN tubes may reflect its dominance in the 2,4-D degrading community in soil (Macur ; Zabaloy and Gómez, 2013). Our results show that
Cupriavidus sp. BJ71, isolated from a polluted wheat field in
China, can rapidly degrade 2,4-D in liquid medium. The biodegradation of 2,4-D was
much more rapid in 2,4-D (350 mg kg−1)-treated soil inoculated with BJ71
than in soil without this strain. These results suggest that C.
campinensis BJ71 could be a suitable candidate for bioaugmentation for
in situ clean-up strategies. Because it is an indigenous
organism, it is more likely to survive than are other non-indigenous bacteria when
introduced into polluted soil and water environments in China.
Authors: Terry R Wright; Guomin Shan; Terence A Walsh; Justin M Lira; Cory Cui; Ping Song; Meibao Zhuang; Nicole L Arnold; Gaofeng Lin; Kerrm Yau; Sean M Russell; Robert M Cicchillo; Mark A Peterson; David M Simpson; Ning Zhou; Jayakumar Ponsamuel; Zhanyuan Zhang Journal: Proc Natl Acad Sci U S A Date: 2010-11-08 Impact factor: 11.205
Authors: J Goris; P De Vos; T Coenye; B Hoste; D Janssens; H Brim; L Diels; M Mergeay; K Kersters; P Vandamme Journal: Int J Syst Evol Microbiol Date: 2001-09 Impact factor: 2.747
Authors: Virginia Cuadrado; Margarita Gomila; Luciano Merini; Ana M Giulietti; Edward R B Moore Journal: Int J Syst Evol Microbiol Date: 2009-12-18 Impact factor: 2.747
Authors: W E Holben; B M Schroeter; V G Calabrese; R H Olsen; J K Kukor; V O Biederbeck; A E Smith; J M Tiedje Journal: Appl Environ Microbiol Date: 1992-12 Impact factor: 4.792
Authors: Giovanni Nicoletti; Marco Saler; Tommaso Pellegatta; Marco Mario Tresoldi; Viola Bonfanti; Alberto Malovini; Angela Faga; Federica Riva Journal: Biomed Rep Date: 2017-10-18