Literature DB >> 1476437

Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid.

W E Holben1, B M Schroeter, V G Calabrese, R H Olsen, J K Kukor, V O Biederbeck, A E Smith, J M Tiedje.   

Abstract

Soils with a history of 2,4-dichlorophenoxyacetic acid (2,4-D) treatment at field application rates and control soils with no prior exposure to 2,4-D were amended with 2,4-D in the laboratory. Before and during these treatments, the populations of 2,4-D-degrading bacteria were monitored by most-probable-number (MPN) enumeration and hybridization analyses, using probes for the tfd genes of plasmid pJP4, which encode enzymes for 2,4-D degradation. Data obtained by these alternate methods were compared. Several months after the most recent field application of 2,4-D (approximately 1 ppm), soils with a 42-year history of 2,4-D treatment did not have significantly higher numbers of 2,4-D-degrading organisms than did control soils with no prior history of treatment. In response to laboratory amendments with 2,4-D, both the previously treated soils and those with no prior history of exposure exhibited a dramatic increase in the number of 2,4-D-metabolizing organisms. The MPN data indicate a 4- to 5-log population increase after one amendment with 250 ppm of 2,4-D and ultimately a 6- to 7-log increase after four additional amendments, each with 400 ppm of 2,4-D. Similarly, when total bacterial DNA from the soil microbial community of these samples was analyzed by using a probe for the tfdA gene (2,4-D monoxygenase) or the tfdB gene (2,4-dichlorophenol hydroxylase) a dramatic increase in the level of hybridization was observed in both soils.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1992        PMID: 1476437      PMCID: PMC183208          DOI: 10.1128/aem.58.12.3941-3948.1992

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

1.  Comparative genetic organization of incompatibility group P degradative plasmids.

Authors:  R S Burlage; L A Bemis; A C Layton; G S Sayler; F Larimer
Journal:  J Bacteriol       Date:  1990-12       Impact factor: 3.490

2.  DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community.

Authors:  William E Holben; Janet K Jansson; Barry K Chelm; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  1988-03       Impact factor: 4.792

3.  Rapid method for direct extraction of DNA from soil and sediments.

Authors:  Y L Tsai; B H Olson
Journal:  Appl Environ Microbiol       Date:  1991-04       Impact factor: 4.792

4.  Phenotypic and genotypic adaptation of aerobic heterotrophic sediment bacterial communities to mercury stress.

Authors:  T Barkay; B H Olson
Journal:  Appl Environ Microbiol       Date:  1986-08       Impact factor: 4.792

5.  Maintenance and stability of introduced genotypes in groundwater aquifer material.

Authors:  R K Jain; G S Sayler; J T Wilson; L Houston; D Pacia
Journal:  Appl Environ Microbiol       Date:  1987-05       Impact factor: 4.792

6.  DNA amplification to enhance detection of genetically engineered bacteria in environmental samples.

Authors:  R J Steffan; R M Atlas
Journal:  Appl Environ Microbiol       Date:  1988-09       Impact factor: 4.792

7.  Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus.

Authors:  R H Don; J M Pemberton
Journal:  J Bacteriol       Date:  1981-02       Impact factor: 3.490

8.  Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfdA of Alcaligenes eutrophus JMP134.

Authors:  W R Streber; K N Timmis; M H Zenk
Journal:  J Bacteriol       Date:  1987-07       Impact factor: 3.490

9.  Application of DNA-DNA colony hybridization to the detection of catabolic genotypes in environmental samples.

Authors:  G S Sayler; M S Shields; E T Tedford; A Breen; S W Hooper; K M Sirotkin; J W Davis
Journal:  Appl Environ Microbiol       Date:  1985-05       Impact factor: 4.792

10.  Purification and properties of a plasmid-encoded 2,4-dichlorophenol hydroxylase.

Authors:  T Liu; P J Chapman
Journal:  FEBS Lett       Date:  1984-08-06       Impact factor: 4.124

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  39 in total

1.  In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer.

Authors:  Julia R de Lipthay; Nina Tuxen; Kaare Johnsen; Lars H Hansen; Hans-Jørgen Albrechtsen; Poul L Bjerg; Jens Aamand
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

2.  Multicellular organization in a degradative biofilm community.

Authors:  G M Wolfaardt; J R Lawrence; R D Robarts; S J Caldwell; D E Caldwell
Journal:  Appl Environ Microbiol       Date:  1994-02       Impact factor: 4.792

3.  Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria.

Authors:  J B Herrick; E L Madsen; C A Batt; W C Ghiorse
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

4.  Parallel and divergent genotypic evolution in experimental populations of Ralstonia sp.

Authors:  C H Nakatsu; R Korona; R E Lenski; F J de Bruijn; T L Marsh; L J Forney
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

5.  Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation.

Authors:  E M Top; W E Holben; L J Forney
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

6.  Monitoring gene expression in mixed microbial communities by using DNA microarrays.

Authors:  Philip Dennis; Elizabeth A Edwards; Steven N Liss; Roberta Fulthorpe
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

7.  Evidence for Acquisition in Nature of a Chromosomal 2,4-Dichlorophenoxyacetic Acid/(alpha)-Ketoglutarate Dioxygenase Gene by Different Burkholderia spp.

Authors:  V G Matheson; L J Forney; Y Suwa; C H Nakatsu; A J Sexstone; W E Holben
Journal:  Appl Environ Microbiol       Date:  1996-07       Impact factor: 4.792

8.  Genetic Diversity through the Looking Glass: Effect of Enrichment Bias.

Authors:  J Dunbar; S White; L Forney
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

9.  Degradation of Chlorophenols by Alcaligenes eutrophus JMP134(pJP4) in Bleached Kraft Mill Effluent.

Authors:  J Valenzuela; U Bumann; R Cespedes; L Padilla; B Gonzalez
Journal:  Appl Environ Microbiol       Date:  1997-01       Impact factor: 4.792

10.  Biodegradation of 2,4-Dichlorophenol through a Distal meta-Fission Pathway.

Authors:  S Koh; M V McCullar; D D Focht
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

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