Literature DB >> 11491129

Diffusion-limited component of reactions catalyzed by Bacillus cereus beta-lactamase I.

L W Hardy1, J F Kirsch.   

Abstract

The Bacillus cereus beta-lactamase I catalyzes the hydrolysis of a wide variety of penicillins and cephalosporins with values of k(cat)/K(m) varying over several orders of magnitude. The values of this parameter for the most reactive of these compounds, benzylpenicillin, I, and furylacryloyl-penicillin, II (k(cat)/K(m) = 2.43 x 10(7) M(-1) s(-1) and 2.35 x 10(7) M(-1) s(-1), respectively, at pH 7.0 in potassium phosphate buffer containing 0.17 M KCl, I(c) = 0.63, 25 degrees C) are decreased markedly by increasing viscosity in sucrose- or glycerol-containing buffers. The relative sensitivities to viscosity of k(cat)/K(m) values for I and for cephaloridine, III, were found to be virtually unchanged at pH 3.8 from those observed at pH 7.0. The differential effects of viscosity on the reactive vs. the sluggish [e.g., cephalothin (IV), k(cat)/K(m) = 1 x 10(4) M(-1) s(-1)] substrates support the contention that the rates of reaction of the former with the enzyme are in part diffusion controlled. Quantitative analysis gives values for the association rate constants, k(1), of 7.6 x 10(7) M(-1) s(-1), 4 x 10(7) M(-1) s(-1), and 1.1 x 10(7) M(-1) s(-1) for I, II, and III, respectively. As both reactive and sluggish substrates associate with the active site of the enzyme with relatively similar rate constants, the variation in k(cat)/K(m) values is primarily due to the variation in the partition ratios k(-1)/k(2), for the ES complex, which are 2.3, 0.77, and 30 for I, II, and III, respectively. The preceding analysis is based on direct application of the Stokes-Einstein diffusion law to enzyme kinetics. The range of applicability of this law to the diffusion of substrate size molecules and the mechanics of diffusion of ionic species through viscous solutions of sucrose vs. polymers are explored.

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Year:  1984        PMID: 11491129     DOI: 10.1021/bi00301a040

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  Class C beta-lactamases operate at the diffusion limit for turnover of their preferred cephalosporin substrates.

Authors:  A Bulychev; S Mobashery
Journal:  Antimicrob Agents Chemother       Date:  1999-07       Impact factor: 5.191

2.  Site-directed mutagenesis and substrate-induced inactivation of beta-lactamase I.

Authors:  S J Thornewell; S G Waley
Journal:  Biochem J       Date:  1992-12-15       Impact factor: 3.857

3.  Inactivation of the thiol RTEM-1 beta-lactamase by 6-beta-bromopenicillanic acid. Identity of the primary active-site nucleophile.

Authors:  A K Knap; R F Pratt
Journal:  Biochem J       Date:  1987-10-01       Impact factor: 3.857

4.  TEM-1 backbone dynamics-insights from combined molecular dynamics and nuclear magnetic resonance.

Authors:  Olivier Fisette; Sébastien Morin; Pierre-Yves Savard; Patrick Lagüe; Stéphane M Gagné
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

5.  Beta-lactamases as fully efficient enzymes. Determination of all the rate constants in the acyl-enzyme mechanism.

Authors:  H Christensen; M T Martin; S G Waley
Journal:  Biochem J       Date:  1990-03-15       Impact factor: 3.857

6.  Selective neutrality and enzyme kinetics.

Authors:  L Demetrius
Journal:  J Mol Evol       Date:  1997-10       Impact factor: 2.395

7.  Molecular dynamics of class A β-lactamases-effects of substrate binding.

Authors:  Olivier Fisette; Stéphane Gagné; Patrick Lagüe
Journal:  Biophys J       Date:  2012-10-16       Impact factor: 4.033

8.  Trapping the acyl-enzyme intermediate in beta-lactamase I catalysis.

Authors:  S J Cartwright; A K Tan; A L Fink
Journal:  Biochem J       Date:  1989-11-01       Impact factor: 3.857

9.  Peptidase activity of beta-lactamases.

Authors:  N Rhazi; M Galleni; M I Page; J M Frère
Journal:  Biochem J       Date:  1999-07-15       Impact factor: 3.857

10.  Kinetic mechanism of human histidine triad nucleotide binding protein 1.

Authors:  Xin Zhou; Tsui-Fen Chou; Brandon E Aubol; Chin Ju Park; Richard Wolfenden; Joseph Adams; Carston R Wagner
Journal:  Biochemistry       Date:  2013-05-07       Impact factor: 3.162

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