Literature DB >> 26262470

Mutual Exclusion of Urea and Trimethylamine N-Oxide from Amino Acids in Mixed Solvent Environment.

Pritam Ganguly1, Timir Hajari1, Joan-Emma Shea, Nico F A van der Vegt1.   

Abstract

We study the solvation of amino acids in pure-osmolyte and mixed-osmolyte urea and trimethylamine N-oxide (TMAO) solutions using molecular dynamics simulations. Analysis of Kirkwood-Buff integrals between the solution components provides evidence that in the mixed osmolytic solution, both urea and TMAO are mutually excluded from the amino acid surface, accompanied by an increase in osmolyte-osmolyte aggregation. Similar observations are made in simulations of a model protein backbone, represented by triglycine, and suggest that TMAO stabilizes proteins under urea denaturation conditions by effectively removing urea from the protein surface. The effects of the mixed osmolytes on the solvation of the amino acids and the backbone are found to be highly nonlinear in terms of the effects of the individual osmolytes and independent of differences in the strength of the TMAO-water interactions, as observed with different TMAO force fields.

Entities:  

Keywords:  Kirkwood−Buff theory; TMAO; amino acids; osmolytes; preferential solvation; water

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Year:  2015        PMID: 26262470     DOI: 10.1021/jz502634k

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  4 in total

1.  Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?

Authors:  Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

2.  Dynamical Effects of Trimethylamine N-Oxide on Aqueous Solutions of Urea.

Authors:  Xiaojing Teng; Toshiko Ichiye
Journal:  J Phys Chem B       Date:  2019-01-28       Impact factor: 2.991

3.  Trimethylamine N-oxide stabilizes proteins via a distinct mechanism compared with betaine and glycine.

Authors:  Yi-Ting Liao; Anthony C Manson; Michael R DeLyser; William G Noid; Paul S Cremer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-22       Impact factor: 11.205

4.  Weighted persistent homology for osmolyte molecular aggregation and hydrogen-bonding network analysis.

Authors:  D Vijay Anand; Zhenyu Meng; Kelin Xia; Yuguang Mu
Journal:  Sci Rep       Date:  2020-06-16       Impact factor: 4.379

  4 in total

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