Literature DB >> 26259805

Multivalent LKγ-PNA oligomers bind to a human telomere DNA G-rich sequence to form quadruplexes.

Pankaj Gupta1, Elizabeth E Rastede1, Daniel H Appella2.   

Abstract

We report G-quadruplex formation between peptide nucleic acids (PNAs) composed of (L)Kγ-PNA-G monomers and a known portion of human telomeric DNA that adopts three G3 tracts via intramolecular hydrogen bonding. The resulting complex is a bimolecular PNA-DNA heteroquadruplex. In this Letter, we show that introduction of a γ-modification and addition of a peptide ligand does not disrupt the heteroquadruplex. Although the unmodified PNA1 forms a quadruplex with itself, the γ-substituted PNAs (PNA2-PNA6) do not form G-quadruplexes on their own, at even high concentrations. The selectivity of these PNAs could influence the design of new quadruplex-targeting molecules or allow the quadruplex structure to be used as a scaffold for multivalent display of protein binding ligands. Published by Elsevier Ltd.

Entities:  

Keywords:  DNA; PNA; Quadruplex

Mesh:

Substances:

Year:  2015        PMID: 26259805      PMCID: PMC5603266          DOI: 10.1016/j.bmcl.2015.07.075

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  43 in total

1.  Hybridization of PNA to structured DNA targets: quadruplex invasion and the overhang effect.

Authors:  B Datta; B A Armitage
Journal:  J Am Chem Soc       Date:  2001-10-03       Impact factor: 15.419

2.  Inhibition of telomerase by G-quartet DNA structures.

Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

3.  Conformationally constrained PNA analogues: structural evolution toward DNA/RNA binding selectivity.

Authors:  Vaijayanti A Kumar; Krishna N Ganesh
Journal:  Acc Chem Res       Date:  2005-05       Impact factor: 22.384

4.  RNA guanine quadruplex invasion by complementary and homologous PNA probes.

Authors:  Violeta L Marin; Bruce A Armitage
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

Review 5.  A hitchhiker's guide to G-quadruplex ligands.

Authors:  David Monchaud; Marie-Paule Teulade-Fichou
Journal:  Org Biomol Chem       Date:  2007-11-14       Impact factor: 3.876

6.  High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence.

Authors:  Jin Chen; Ravindra V Dalal; Alexey N Petrov; Albert Tsai; Seán E O'Leary; Karen Chapin; Janice Cheng; Mark Ewan; Pei-Lin Hsiung; Paul Lundquist; Stephen W Turner; David R Hsu; Joseph D Puglisi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

Review 7.  DNA sequences that interfere with transcription: implications for genome function and stability.

Authors:  Boris P Belotserkovskii; Sergei M Mirkin; Philip C Hanawalt
Journal:  Chem Rev       Date:  2013-08-23       Impact factor: 60.622

8.  Probing heterobivalent binding to the endocytic AP-2 adaptor complex by DNA-based spatial screening.

Authors:  F Diezmann; L von Kleist; V Haucke; O Seitz
Journal:  Org Biomol Chem       Date:  2015-06-29       Impact factor: 3.876

9.  Targeting G-quadruplex structure in the human c-Kit promoter with short PNA sequences.

Authors:  Jussara Amato; Bruno Pagano; Nicola Borbone; Giorgia Oliviero; Valérie Gabelica; Edwin De Pauw; Stefano D'Errico; Vincenzo Piccialli; Michela Varra; Concetta Giancola; Gennaro Piccialli; Luciano Mayol
Journal:  Bioconjug Chem       Date:  2011-03-16       Impact factor: 4.774

Review 10.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

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  2 in total

1.  High-resolution three-dimensional NMR structure of the KRAS proto-oncogene promoter reveals key features of a G-quadruplex involved in transcriptional regulation.

Authors:  Abdelaziz Kerkour; Julien Marquevielle; Stefaniia Ivashchenko; Liliya A Yatsunyk; Jean-Louis Mergny; Gilmar F Salgado
Journal:  J Biol Chem       Date:  2017-03-22       Impact factor: 5.157

Review 2.  Perspectives on conformationally constrained peptide nucleic acid (PNA): insights into the structural design, properties and applications.

Authors:  Chaturong Suparpprom; Tirayut Vilaivan
Journal:  RSC Chem Biol       Date:  2022-03-18
  2 in total

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