| Literature DB >> 26258681 |
Xin Long1, Qian Chen2, Jianping Zhao3, Nicholas Rafaels4, Priyanka Mathias4, Huifang Liang3, Joseph Potee4, Monica Campbell4, Bixiang Zhang3, Li Gao4, Steve N Georas5, Donata Vercelli6, Terri H Beaty7, Ingo Ruczinski7, Rasika Mathias4, Kathleen C Barnes4, Xiaoping Chen3.
Abstract
The aim of this study was to determine whether two polymorphisms in the gene encoding IL13 previously associated with Schistosoma hematobium (S. hematobium) and S. mansoni infection are associated with S. japonicum infection. Single nucleotide polymorphisms (SNPs) rs1800925 (IL13/-1112C>T) and rs20541 (IL13R130Q) were genotyped in 947 unrelated individuals (307 chronically infected, 339 late-stage with liver fibrosis, 301 uninfected controls) from a schistosomiasis-endemic area of Hubei province in China. Regression models were used to evaluate allelic and haplotypic associations with chronic and late-stage schistosomiasis adjusted for non-genetic covariates. Expression of IL-13 was measured in S. japonicun-infected liver fibrosis tissue and normal liver tissue from uninfected controls by immunohistochemistry (IHC). The role of rs1800925 in IL-13 transcription was further determined by Luciferase report assay using the recombinant PGL4.17-rs180092 plasmid. We found SNP rs1800925T was associated with late-stage schistosomiasis caused by S. japonicum but not chronic schistosomiasis (OR = 1.39, 95%CI = 1.02-1.91, p = 0.03) and uninfected controls (OR = 1.49, 95%CI = 1.03-2.13, p = 0.03). Moreover, the haplotype rs1800925T-rs20541C increased the risk of disease progression to late-stage schistosomiasis (OR = 1.46, p = 0.035), whereas haplotype rs1800925C-rs20541A showed a protective role against development of late-stage schistosomiasis (F = 0.188, OR = 0.61, p = 0.002). Furthermore, S. japonicum-induced fibrotic liver tissue had higher IL13 expression than normal liver tissue. Plasmid PGL4.17-rs1800925T showed a stronger relative luciferase activity than Plasmid PGL4.17-rs1800925C in 293FT, QSG-7701 and HL-7702 cell lines. In conclusion, the functional IL13 polymorphism, rs1800925T, previously associated with risk of schistosomiasis, also contributes to risk of late-stage schistosomiasis caused by S. japonicum.Entities:
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Year: 2015 PMID: 26258681 PMCID: PMC4530950 DOI: 10.1371/journal.pone.0135360
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
General characteristics of healthy control, chronic and late-stage study groups.
| Variable | Controls (n = 301) | Chronic cases (n = 307) | Late-stage cases (n = 339) |
| P2 |
|
|---|---|---|---|---|---|---|
| Gender (male %) | 41.5% | 58.3% | 74.3% | <0.001 | <0.001 | <0.001 |
| Age (year) | 42.3±11.3 | 53.2±10.8 | 55.9±10.2 | <0.001 | 0.002 | <0.001 |
| IHA (%) | 0 | 100 | 98.8 | <0.001 | 0.158 | <0.001 |
| HBV infection (%) | 8.3 | 15.3 | 13.0 | 0.008 | 0.396 | 0.059 |
| Alcohol consumption (%) | 31.2 | 46.0 | 31.2 | <0.001 | <0.001 | 0.992 |
P1: Chronic cases versus Control cases, P2: Late-stage cases versus Chronic cases, P3: Late-stage cases versus Control cases.
IHA: Indirect Hemagglutination Assay
HBV: Hepatitis B Virus
Age was presented as mean ±standard deviation (SD)
General characteristics of IL13 SNPs in Chines study samples.
| SNP marker | Chromosomal position | Gene | Functional position | Minor/major allele | MAF |
|---|---|---|---|---|---|
| rs1800925 | 5:131992809 | IL13 | Upstream-gene | T/C | 0.170 |
| rs20541 | 5: 131995964 | IL13 | Missense | A/G | 0.332 |
* From hg19.
Fig 1Pairwise linkage disequilibrium (LD) of 2SNPS in IL13 gene.
Allelic association of IL13 SNPs with chronic and late-stage S. japonicum infection.
| SNP marker | Minor allele | Chronic cases vs controls | Late-stage cases vs chronic cases | Late-stage cases vs controls | |||
|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||
| rs1800925 | T | 1.05 (0.74–1.49) | 0.80 | 1.39 (1.02–1.91) | 0.03 | 1.49 (1.03–2.13) | 0.03 |
| rs20541 | A | 0.96 (0.72–1.72) | 0.81 | 0.85 (0.65–1.11) | 0.23 | 0.91 (0.67–1.24) | 0.56 |
Haplotypic association of IL13 SNPs with chronic and late-stage S. japonicum infection.
| Haplotype | F1 | F2 | F3 | Chronic cases vs controls | Late-stage cases vs chronic cases | Late-stage cases vs controls | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| rs1800925 | rs25041 | OR(95%CI) |
| OR(95%CI) |
| OR(95%CI) |
| |||
| T | A | 0.149 | 0.123 | 0.163 | 0.95(0.64–1.39) | 0.777 | 1.46(1.03–2.08) | 0.035 | 1.36(0.93–1.99) | 0.116 |
| C | A | 0.188 | 0.220 | 0.155 | 1.01(0.70–1.46) | 0.958 | 0.61(0.45–0.84) | 0.002 | 0.65(0.44–0.96) | 0.032 |
| T | G | 0.011 | 0.025 | 0.020 | 2.41(0.74–7.81) | 0.142 | 0.92(0.42–2.03) | 0.838 | 3.42(0.87–13.50) | 0.079 |
| C | G | 0.652 | 0.632 | 0.662 | 0.96(0.72–1.28) | 0.790 | 1.14(0.89–1.46) | 0.306 | 1.00(1) | 0.989 |
| Omnibus | Omnibus | Omnibus | ||||||||
F1, frequency of controls; F2, frequency of chronic cases; F3, frequency of late-stage cases.
Fig 2IL-13 protein was determined by IHC and western blot.
(A) Representative images of normal liver tissues and S.japonicum-induced fibrotic liver tissues (Images were captured at 100x and 400x with scale bar of 100 μm). (B) Comparison of scores of ST2 staining intensity betwee S. japonicum-induced fibrotic liver tissues and normal liver tissues. (C) IL-13 protein was detected in liver tissue lysates by western blots.
Fig 3Relative luciferase activity of plasmid construct of PGL4.17-rs1800925T and PGL4.17-rs1800925C in 293FT, QSG-7701 and HL-7702 cell lines.
(A) Complementary base sequence of target DNA in plasmid PGL4.17-rs1800925C. (B) Complementary base sequence of target DNA in plasmid PGL4.17-rs1800925T constructed by overlap PCR. (C) Relative luciferase activity of plasmid construct of PGL4.17-rs1800925T and PGL4.17-rs1800925C in 293FT, QSG-7701 and HL-7702 cell lines. (Rs1800925C indicates plasmid PGL4.17-rs1800925C and rs1800925T indicates plasmid PGL4.17-rs1800925T).