| Literature DB >> 26254559 |
W Wujcicka1,2, Z Gaj3,4, J Wilczyński4, D Nowakowska4.
Abstract
The purpose of this investigation was the determination of the distribution of genotypes at single nucleotide polymorphisms (SNPs) of the toll-like receptor 4 (TLR4) and the toll-like receptor 9 (TLR9) in fetuses and newborns congenitally infected with Toxoplasma gondii and the identification of genetic changes predisposing to infection development. The study involved 20 fetuses and newborns with congenital toxoplasmosis and 50 uninfected controls. The levels of IgG and IgM antibodies against T. gondii, as well as IgG avidity, were estimated by enzyme-linked fluorescent assay (ELFA) tests. T. gondii DNA loads in amniotic fluids were assayed by the real-time (RT) quantitative polymerase chain reaction (Q PCR) technique for parasitic B1 gene. TLR4 and TLR9 SNPs were identified using a self-designed multiplex nested PCR-restriction fragment length polymorphism (RFLP) assay. Randomly selected genotypes at SNPs were confirmed by sequencing. All the genotypes were tested for Hardy-Weinberg equilibrium and TLR4 genotypes were analyzed for linkage disequilibrium. A correlation was studied between the genotypes or haplotypes and the development of congenital toxoplasmosis using a logistic regression model. Single SNP analysis showed no statistically significant differences in the distribution of distinct genotypes at the analyzed TLR4 and TLR9 SNPs between T. gondii-infected fetuses and newborns and the controls. Taking into account the prevalence of alleles residing within polymorphic sites, similar prevalence rates were observed in both of the studied groups. The multiple SNP analysis indicated GTG variants at the TLR4 and TLR9 SNPs to be significantly less frequent in offspring with congenital toxoplasmosis than in uninfected offspring (p ≤ 0.0001). TLR4 and TLR9 SNPs seem to be involved in protection against congenital toxoplasmosis.Entities:
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Year: 2015 PMID: 26254559 PMCID: PMC4565873 DOI: 10.1007/s10096-015-2461-3
Source DB: PubMed Journal: Eur J Clin Microbiol Infect Dis ISSN: 0934-9723 Impact factor: 3.267
Primers, annealing temperatures, and the lengths of products obtained in the multiplex nested polymerase chain reaction (PCR) assay for single nucleotide polymorphisms (SNPs) in the toll-like receptor 4 (TLR4) and toll-like receptor 9 (TLR9) genes
| Gene | SNPa name | Primer sequences (5′-3′) | Annealing temperature (°C) | Amplicon length (bps)b | Restriction enzyme | Profile (bps) | |
|---|---|---|---|---|---|---|---|
|
| 896 A>G (1063 A>G, rs4986790) | External | For: AAAACTTGTATTCAAGGTCTGGC | 52 | 355 | NcoI | AA: 188 |
| Rev: TGTTGGAAGTGAAAGTAAGCCT | |||||||
| Internal | For: AGCATACTTAGACTACTACCTCCATG | 61 | 188 | ||||
| Rev: AGAAGATTTGAGTTTCAATGTGGG | |||||||
| 1196 C>T (1363 C>T, rs4986791) | External | For: AGTTGATCTACCAAGCCTTGAGT | 52 | 510 | HinfI | CC: 407 | |
| Rev: GGAAACGTATCCAATGAAAAGA | |||||||
| Internal | For: GGTTGCTGTTCTCAAAGTGATTTTGGGAGAA | 59 | 407 | ||||
| Rev: ACCTGAAGACTGGAGAGTGAGTTAAATGCT | |||||||
|
| 1635 G>A (2848G>A, rs352140) | External | For: GTCAATGGCTCCCAGTTCC | 52 | 292 | BstUI | GG: 135, 42 |
| Rev: CATTGCCGCTGAAGTCCA | |||||||
| Internal | For: AAGCTGGACCTCTACCACGA | 59 | 177 | ||||
| Rev: TTGGCTGTGGATGTTGTT | |||||||
a SNP single nucleotide polymorphism
b bps base pairs
Fig. 1Agarose gel electrophoresis of polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) products for profiling genotypes at the toll-like receptor 4 (TLR4) 896 A>G single-nucleotide polymorphism (SNP) (a), the TLR4 1196 C>T SNP (b), and the TLR9 1635 G>A SNP (c). DNA fragments which resulted from the restriction analyses performed with NcoI (a), HinfI (b), and BstUI (c) endonucleases were separated in 2 % agarose gels and stained with ethidium bromide. The numbers on the right-hand side show the size of resolved DNA fragments. M 50-bp DNA marker; Ud undigested PCR product; AA, AG, GG, GA, CC, CT, TT genotypes at the studied TLR polymorphisms
Fig. 2Chromatograms of DNA sequences containing the TLR4 896 A>G SNP (a, b), the TLR4 1196 C>T SNP (c, d), and the TLR9 1635 G>A SNP (e–g). DNA reverse strands were sequenced for all the analyzed SNPs. AA, AG, CC, CT, GG, GA genotypes at the described TLR SNPs
Single SNP analysis of the relationship between TLR polymorphisms and congenital Toxoplasma gondii infection
| Gene polymorphism | Genetic model | Genotype | Genotype prevalence rates; | ORb (95 % CI)c |
| |
|---|---|---|---|---|---|---|
| Infected cases | Uninfected controls | |||||
|
| Codominant | AA | 18 (94.7 %) | 47 (94 %) | 1.00 | 0.420 |
| AG | 1 (5.3 %) | 1 (2 %) | 2.61 (0.15–44.01) | |||
| GG | 0 (0 %) | 2 (4 %) | 0.00 (0.00–NA) | |||
| Dominant | AA | 18 (94.7 %) | 47 (94 %) | 1.00 | 0.910 | |
| AG-GG | 1 (5.3 %) | 3 (6 %) | 0.87 (0.08–8.92) | |||
| Recessive | AA-AG | 19 (100 %) | 48 (96 %) | 1.00 | 0.250 | |
| GG | 0 (0 %) | 2 (4 %) | 0.00 (0.00–NA) | |||
| Overdominant | AA-GG | 18 (94.7 %) | 49 (98 %) | 1.00 | 0.490 | |
| AG | 1 (5.3 %) | 1 (2 %) | 2.72 (0.16–45.85) | |||
| Log-additive | – | – | – | 0.66 (0.12–3.75) | 0.620 | |
|
| Codominant | CC | 17 (94.4 %) | 36 (87.8 %) | 1.00 | 0.450 |
| CT | 1 (5.6 %) | 3 (7.3 %) | 0.71 (0.07–7.3) | |||
| TT | 0 (0 %) | 2 (4.9 %) | 0.00 (0.00–NA) | |||
| Dominant | CC | 17 (94.4 %) | 36 (87.8 %) | 1.00 | 0.410 | |
| CT-TT | 1 (5.6 %) | 5 (12.2 %) | 0.42 (0.05–3.91) | |||
| Recessive | CC-CT | 18 (100 %) | 39 (95.1 %) | 1.00 | 0.220 | |
| TT | 0 (0 %) | 2 (4.9 %) | 0.00 (0.00–NA) | |||
| Overdominant | CC-TT | 17 (94.4 %) | 38 (92.7 %) | 1.00 | 0.800 | |
| CT | 1 (5.6 %) | 3 (7.3 %) | 0.75 (0.07–7.69) | |||
| Log-additive | – | – | – | 0.43 (0.07–2.78) | 0.300 | |
|
| Codominant | AA | 5 (25 %) | 15 (34.1 %) | 1.00 | 0.760 |
| GA | 11 (55 %) | 21 (47.7 %) | 1.57 (0.45–5.47) | |||
| GG | 4 (20 %) | 8 (18.2 %) | 1.50 (0.31–7.21) | |||
| Dominant | AA | 5 (25 %) | 15 (34.1 %) | 1.00 | 0.460 | |
| GA-GG | 15 (75 %) | 29 (65.9 %) | 1.55 (0.47–5.09) | |||
| Recessive | AA-GA | 16 (80 %) | 36 (81.8 %) | 1.00 | 0.860 | |
| GG | 4 (20 %) | 8 (18.2 %) | 1.12 (0.3–4.28) | |||
| Overdominant | AA-GG | 9 (45 %) | 23 (52.3 %) | 1.00 | 0.590 | |
| GA | 11 (55 %) | 21 (47.7 %) | 1.34 (0.46–3.87) | |||
| Log-additive | – | – | – | 1.25 (0.59–2.68) | 0.560 | |
p ≤ 0.050 is considered significant
a n number of examined fetuses and newborns
b OR odds ratio
c CI confidence interval
dLogistic regression model
Prevalence rates of the alleles at the TLR4 and TLR9 polymorphic sites
| Gene polymorphism | No.a of carriers with |
| ||
|---|---|---|---|---|
| Congenital toxoplasmosis | Uninfected control | |||
|
| ||||
| Alleles | A | 37 (97.4) | 95 (95.0) | 0.542 |
| G | 1 (2.6) | 5 (5.0) | ||
|
| ||||
| Alleles | C | 35 (97.2) | 75 (91.5) | 0.252 |
| T | 1 (2.8) | 7 (8.5) | ||
|
| ||||
| Alleles | G | 19 (47.5) | 51 (58.0) | 0.271 |
| A | 21 (52.5) | 37 (42.0) | ||
p ≤ 0.050 is considered significant
a No. number
bPearson’s Chi-squared test