Literature DB >> 26254229

Ready, pause, go: regulation of RNA polymerase II pausing and release by cellular signaling pathways.

Xiuli Liu1, W Lee Kraus2, Xiaoying Bai3.   

Abstract

Promoter-proximal pausing by RNA polymerase II (Pol II) is a well-established mechanism to control the timing, rate, and possibly the magnitude of transcriptional responses. Recent studies have shown that cellular signaling pathways can regulate gene transcription and signaling outcomes by controlling Pol II pausing in a wide array of biological systems. Identification of the proteins and small molecules that affect the establishment and release of paused Pol II is shedding new light on the mechanisms and biology of Pol II pausing. This review focuses on the interplay between cellular signaling pathways and Pol II pausing during normal development and under disease conditions. Published by Elsevier Ltd.

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Year:  2015        PMID: 26254229      PMCID: PMC4553066          DOI: 10.1016/j.tibs.2015.07.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  109 in total

Review 1.  Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation.

Authors:  J Lis
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1998

Review 2.  Controlling the elongation phase of transcription with P-TEFb.

Authors:  B Matija Peterlin; David H Price
Journal:  Mol Cell       Date:  2006-08-04       Impact factor: 17.970

3.  A chromatin landmark and transcription initiation at most promoters in human cells.

Authors:  Matthew G Guenther; Stuart S Levine; Laurie A Boyer; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

4.  Differential regulation of NF-kappaB by elongation factors is determined by core promoter type.

Authors:  Liat Amir-Zilberstein; Elena Ainbinder; Leanne Toube; Yuki Yamaguchi; Hiroshi Handa; Rivka Dikstein
Journal:  Mol Cell Biol       Date:  2007-05-14       Impact factor: 4.272

Review 5.  MLL: how complex does it get?

Authors:  Relja Popovic; Nancy J Zeleznik-Le
Journal:  J Cell Biochem       Date:  2005-05-15       Impact factor: 4.429

6.  P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation.

Authors:  Tomoko Yamada; Yuki Yamaguchi; Naoto Inukai; Sachiko Okamoto; Takashi Mura; Hiroshi Handa
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

Review 7.  The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation.

Authors:  Shwu-Yuan Wu; Cheng-Ming Chiang
Journal:  J Biol Chem       Date:  2007-02-28       Impact factor: 5.157

8.  The glucocorticoid receptor blocks P-TEFb recruitment by NFkappaB to effect promoter-specific transcriptional repression.

Authors:  Hans F Luecke; Keith R Yamamoto
Journal:  Genes Dev       Date:  2005-05-01       Impact factor: 11.361

9.  Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.

Authors:  Miltiadis Kininis; Benjamin S Chen; Adam G Diehl; Gary D Isaacs; Tong Zhang; Adam C Siepel; Andrew G Clark; W Lee Kraus
Journal:  Mol Cell Biol       Date:  2007-05-21       Impact factor: 4.272

10.  Novel binding partners of Ldb1 are required for haematopoietic development.

Authors:  Natalia Meier; Sanja Krpic; Patrick Rodriguez; John Strouboulis; Maria Monti; Jeroen Krijgsveld; Martin Gering; Roger Patient; Arnd Hostert; Frank Grosveld
Journal:  Development       Date:  2006-11-15       Impact factor: 6.868

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  69 in total

1.  Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle.

Authors:  Clarissa Scholes; Angela H DePace; Álvaro Sánchez
Journal:  Cell Syst       Date:  2016-12-29       Impact factor: 10.304

2.  Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation.

Authors:  Leah A Gates; Jiejun Shi; Aarti D Rohira; Qin Feng; Bokai Zhu; Mark T Bedford; Cari A Sagum; Sung Yun Jung; Jun Qin; Ming-Jer Tsai; Sophia Y Tsai; Wei Li; Charles E Foulds; Bert W O'Malley
Journal:  J Biol Chem       Date:  2017-07-17       Impact factor: 5.157

3.  PHF13: A new player involved in RNA polymerase II transcriptional regulation and co-transcriptional splicing.

Authors:  Alisa Fuchs; Marcos Torroba; Sarah Kinkley
Journal:  Transcription       Date:  2017-01-19

4.  The calculation of transcript flux ratios reveals single regulatory mechanisms capable of activation and repression.

Authors:  Eric A Galburt
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-21       Impact factor: 11.205

5.  Collaborative repressive action of the antagonistic ETS transcription factors Pointed and Yan fine-tunes gene expression to confer robustness in Drosophila.

Authors:  Jemma L Webber; Jie Zhang; Alex Massey; Nicelio Sanchez-Luege; Ilaria Rebay
Journal:  Development       Date:  2018-07-02       Impact factor: 6.868

6.  Transcription pausing regulates mouse embryonic stem cell differentiation.

Authors:  Melodi Tastemel; Aishwarya A Gogate; Venkat S Malladi; Kim Nguyen; Courtney Mitchell; Laura A Banaszynski; Xiaoying Bai
Journal:  Stem Cell Res       Date:  2017-11-16       Impact factor: 2.020

7.  Genomic Binding Patterns of Forkhead Box Protein O1 Reveal Its Unique Role in Cardiac Hypertrophy.

Authors:  Jessica Pfleger; Ryan C Coleman; Jessica Ibetti; Rajika Roy; Ioannis D Kyriazis; Erhe Gao; Konstantinos Drosatos; Walter J Koch
Journal:  Circulation       Date:  2020-07-09       Impact factor: 29.690

Review 8.  Histone Marks in the 'Driver's Seat': Functional Roles in Steering the Transcription Cycle.

Authors:  Leah A Gates; Charles E Foulds; Bert W O'Malley
Journal:  Trends Biochem Sci       Date:  2017-11-06       Impact factor: 13.807

9.  Dynamic Change of Transcription Pausing through Modulating NELF Protein Stability Regulates Granulocytic Differentiation.

Authors:  Xiuli Liu; Aishwarya A Gogate; Melodi Tastemel; Venkat S Malladi; Huiyu Yao; Kim Nguyen; Lily Jun-Shen Huang; Xiaoying Bai
Journal:  Blood Adv       Date:  2017-08-08

10.  RNA polymerase II pausing modulates hematopoietic stem cell emergence in zebrafish.

Authors:  Qiwen Yang; Xiuli Liu; Ting Zhou; Jennifer Cook; Kim Nguyen; Xiaoying Bai
Journal:  Blood       Date:  2016-08-12       Impact factor: 22.113

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