Literature DB >> 22810825

Interpretation of genetic testing: variants of unknown significance.

Brent L Fogel.   

Abstract

As the number of genes available for commercial sequencing increases and the promise of clinical whole-genome sequencing becomes a reality, the interpretation of the results of these tests becomes more challenging for the practicing neurologist as these studies have the potential to detect novel genetic variants. Such reports are becoming more frequent in general practice, and neurologists are often left to puzzle over the relevance of these "variants of unknown significance," as such genetic changes are often described, and how to communicate this information to the patients and their families. This article will briefly illustrate how clinicians can use such results in the care of their patients. Only genetic variants involving coding sequence will be considered, although similar methods may also be applied to changes such as noncoding alterations or copy number variations. It is also important to note that in some cases, particularly those involving tests that only sequence select exons, negative test results may also require special interpretation.

Entities:  

Year:  2011        PMID: 22810825      PMCID: PMC3587691          DOI: 10.1212/01.CON.0000396975.87637.86

Source DB:  PubMed          Journal:  Continuum (Minneap Minn)        ISSN: 1080-2371


  11 in total

1.  Novel mutations in the senataxin DNA/RNA helicase domain in ataxia with oculomotor apraxia 2.

Authors:  Brent L Fogel; Susan Perlman
Journal:  Neurology       Date:  2006-12-12       Impact factor: 9.910

2.  Guidelines for the primary prevention of stroke: a guideline for healthcare professionals from the American Heart Association/American Stroke Association.

Authors:  Larry B Goldstein; Cheryl D Bushnell; Robert J Adams; Lawrence J Appel; Lynne T Braun; Seemant Chaturvedi; Mark A Creager; Antonio Culebras; Robert H Eckel; Robert G Hart; Judith A Hinchey; Virginia J Howard; Edward C Jauch; Steven R Levine; James F Meschia; Wesley S Moore; J V Ian Nixon; Thomas A Pearson
Journal:  Stroke       Date:  2010-12-02       Impact factor: 7.914

3.  An approach to the patient with late-onset cerebellar ataxia.

Authors:  Brent L Fogel; Susan Perlman
Journal:  Nat Clin Pract Neurol       Date:  2006-11

4.  LOVD: easy creation of a locus-specific sequence variation database using an "LSDB-in-a-box" approach.

Authors:  Ivo F A C Fokkema; Johan T den Dunnen; Peter E M Taschner
Journal:  Hum Mutat       Date:  2005-08       Impact factor: 4.878

Review 5.  Clinical features and molecular genetics of autosomal recessive cerebellar ataxias.

Authors:  Brent L Fogel; Susan Perlman
Journal:  Lancet Neurol       Date:  2007-03       Impact factor: 44.182

Review 6.  Sporadic ataxia with adult onset: classification and diagnostic criteria.

Authors:  Thomas Klockgether
Journal:  Lancet Neurol       Date:  2010-01       Impact factor: 44.182

7.  A method and server for predicting damaging missense mutations.

Authors:  Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

8.  Ataxia with oculomotor apraxia type 2: clinical, biological and genotype/phenotype correlation study of a cohort of 90 patients.

Authors:  M Anheim; B Monga; M Fleury; P Charles; C Barbot; M Salih; J P Delaunoy; M Fritsch; L Arning; M Synofzik; L Schöls; J Sequeiros; C Goizet; C Marelli; I Le Ber; J Koht; J Gazulla; J De Bleecker; M Mukhtar; N Drouot; L Ali-Pacha; T Benhassine; M Chbicheb; A M'Zahem; A Hamri; B Chabrol; J Pouget; R Murphy; M Watanabe; P Coutinho; M Tazir; A Durr; A Brice; C Tranchant; M Koenig
Journal:  Brain       Date:  2009-08-20       Impact factor: 13.501

9.  Ovarian failure in ataxia with oculomotor apraxia type 2.

Authors:  David R Lynch; Corey D Braastad; Narasimhan Nagan
Journal:  Am J Med Genet A       Date:  2007-08-01       Impact factor: 2.802

10.  SNPs3D: candidate gene and SNP selection for association studies.

Authors:  Peng Yue; Eugene Melamud; John Moult
Journal:  BMC Bioinformatics       Date:  2006-03-22       Impact factor: 3.169

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  9 in total

1.  Mutation of senataxin alters disease-specific transcriptional networks in patients with ataxia with oculomotor apraxia type 2.

Authors:  Brent L Fogel; Ellen Cho; Amanda Wahnich; Fuying Gao; Olivier J Becherel; Xizhe Wang; Francesca Fike; Leslie Chen; Chiara Criscuolo; Giuseppe De Michele; Alessandro Filla; Abigail Collins; Angelika F Hahn; Richard A Gatti; Genevieve Konopka; Susan Perlman; Martin F Lavin; Daniel H Geschwind; Giovanni Coppola
Journal:  Hum Mol Genet       Date:  2014-04-23       Impact factor: 6.150

Review 2.  Clinical exome sequencing in neurologic disease.

Authors:  Brent L Fogel; Saty Satya-Murti; Bruce H Cohen
Journal:  Neurol Clin Pract       Date:  2016-04

Review 3.  Clinical application of next-generation sequencing to the practice of neurology.

Authors:  Jessica Rexach; Hane Lee; Julian A Martinez-Agosto; Andrea H Németh; Brent L Fogel
Journal:  Lancet Neurol       Date:  2019-05       Impact factor: 44.182

Review 4.  Childhood cerebellar ataxia.

Authors:  Brent L Fogel
Journal:  J Child Neurol       Date:  2012-07-04       Impact factor: 1.987

5.  Next-generation sequencing and analysis of consecutive patients referred for connective tissue disorders.

Authors:  Jacob Steinle; Waheeda A Hossain; Olivia J Veatch; Samuel P Strom; Merlin G Butler
Journal:  Am J Med Genet A       Date:  2022-07-29       Impact factor: 2.578

6.  Early-Onset Neurodevelopmental Movement Disorder Secondary to Novel Mutation in KCNN2.

Authors:  Conor Fearon; Talyta Cortez Grippe; Robert Chen; Anthony E Lang
Journal:  Mov Disord Clin Pract       Date:  2022-09-11

Review 7.  Clinical exome sequencing in neurogenetic and neuropsychiatric disorders.

Authors:  Brent L Fogel; Hane Lee; Samuel P Strom; Joshua L Deignan; Stanley F Nelson
Journal:  Ann N Y Acad Sci       Date:  2015-08-06       Impact factor: 5.691

8.  SMART Cancer Navigator: A Framework for Implementing ASCO Workshop Recommendations to Enable Precision Cancer Medicine.

Authors:  Jeremy L Warner; Ishaan Prasad; Makiah Bennett; Monica Arniella; Alicia Beeghly-Fadiel; Kenneth D Mandl; Gil Alterovitz
Journal:  JCO Precis Oncol       Date:  2018-05-01

9.  Optimizing genomic medicine in epilepsy through a gene-customized approach to missense variant interpretation.

Authors:  Joshua Traynelis; Michael Silk; Quanli Wang; Samuel F Berkovic; Liping Liu; David B Ascher; David J Balding; Slavé Petrovski
Journal:  Genome Res       Date:  2017-09-01       Impact factor: 9.043

  9 in total

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