| Literature DB >> 26247935 |
Luigi Lain1, Salla Lahdenpohja2, Harri Lönnberg3, Tuomas Lönnberg4.
Abstract
2,6-Bis(1,4,7,10-tetraazacyclododecan-1-ylmethyl)pyridine (11a) and 1,3-bis(1,4,7,10-tetraazacyclododecan-1-ylmethyl)benzene (11b) have been shown to accelerate at 50 mmol·L-1 concentration both the cleavage and mutual isomerization of uridylyl-3',5'-uridine and uridylyl-2',5'-uridine by up to two orders of magnitude. The catalytically active ionic forms are the tri- (in the case of 11b) tetra- and pentacations. The pyridine nitrogen is not critical for efficient catalysis, since the activity of 11b is even slightly higher than that of 11a. On the other hand, protonation of the pyridine nitrogen still makes 11a approximately four times more efficient as a catalyst, but only for the cleavage reaction. Interestingly, the respective reactions of adenylyl-3',5'-adenosine were not accelerated, suggesting that the catalysis is base moiety selective.Entities:
Keywords: NA; azacrown; catalysis; cleavage; isomerization; phosphodiester
Mesh:
Substances:
Year: 2015 PMID: 26247935 PMCID: PMC4581222 DOI: 10.3390/ijms160817798
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Representative examples of nonmetallic cleaving agents described in the literature.
Figure 2Chemical shift of the methylene protons of 11a (■) and 11b (□) as a function of pH; T = 90 °C; [phosphoric acid] = 0.10 mol·L−1. The lines have been added to illustrate the trends of chemical shift versus pH.
Figure 3Observed pseudo first-order rate constants for (A) cleavage and (B) isomerization of UpU as a function of [11a] and (C) cleavage and (D) isomerization of UpU as a function of [11b]; T = 90 °C, I(NaClO4) = 1.0 mol·L−1. The catalyst (11a or 11b) was titrated alternatively with 3.5 (○), 3.8 (●), 4.5 (□) or 5.0 (■) eq. of perchloric acid.
Figure 4pH-rate profiles for the (A) 11a- and (B) 11b-catalyzed cleavage (■) and isomerization (□) of UpU; T = 90 °C, I(NaClO4) = 1.0 mol·L−1.
Second-order rate constants for the cleavage and isomerization of UpU, catalyzed by the tri-, tetra- and pentacationic forms of 11a and 11b; T = 90 °C, I(NaClO4) = 1.0 mol·L−1.
| Rate Constant | 11a | 11b | ||
|---|---|---|---|---|
| Cleavage | Isomerization | Cleavage | Isomerization | |
| 26.1 ± 0.2 | 6.2 ± 0.2 | N/A | N/A | |
| 7.37 ± 0.06 | 4.7 ± 0.1 | 17.5 ± 0.4 | 15 ± 3 | |
| N/A | 0.5 ± 0.2 | 11.1 ± 0.8 | 4 ± 6 | |
The concentration of the pentacationic form of 11b is negligible under the experimental conditions; Fitting to Equation (2) gave a negative value.
Figure 5MOPAC (PM6)-minimized structure for tetracationic 11b (green) hydrogen bonded (dashed lines) to the monoanionic, pentacoordinate intermediate (orange) of UpU cleavage and hydrolysis.