Literature DB >> 26243050

A permutation approach for selecting the penalty parameter in penalized model selection.

Jeremy A Sabourin1,2, William Valdar1,3, Andrew B Nobel4,3,5.   

Abstract

We describe a simple, computationally efficient, permutation-based procedure for selecting the penalty parameter in LASSO-penalized regression. The procedure, permutation selection, is intended for applications where variable selection is the primary focus, and can be applied in a variety of structural settings, including that of generalized linear models. We briefly discuss connections between permutation selection and existing theory for the LASSO. In addition, we present a simulation study and an analysis of real biomedical data sets in which permutation selection is compared with selection based on the following: cross-validation (CV), the Bayesian information criterion (BIC), scaled sparse linear regression, and a selection method based on recently developed testing procedures for the LASSO.
© 2015, The International Biometric Society.

Entities:  

Keywords:  LASSO; Penalized regression; Variable selection

Mesh:

Substances:

Year:  2015        PMID: 26243050      PMCID: PMC4715654          DOI: 10.1111/biom.12359

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  7 in total

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Authors:  Jeremy Sabourin; Andrew B Nobel; William Valdar
Journal:  Genet Epidemiol       Date:  2014-11-21       Impact factor: 2.135

2.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
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3.  A SIGNIFICANCE TEST FOR THE LASSO.

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Journal:  Ann Stat       Date:  2014-04       Impact factor: 4.028

4.  SNP selection in genome-wide and candidate gene studies via penalized logistic regression.

Authors:  Kristin L Ayers; Heather J Cordell
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

5.  Reprioritizing genetic associations in hit regions using LASSO-based resample model averaging.

Authors:  William Valdar; Jeremy Sabourin; Andrew Nobel; Christopher C Holmes
Journal:  Genet Epidemiol       Date:  2012-04-30       Impact factor: 2.135

6.  Genome-wide association mapping of quantitative traits in outbred mice.

Authors:  Weidong Zhang; Ron Korstanje; Jill Thaisz; Frank Staedtler; Nicole Harttman; Lingfei Xu; Minjie Feng; Liane Yanas; Hyuna Yang; William Valdar; Gary A Churchill; Keith Dipetrillo
Journal:  G3 (Bethesda)       Date:  2012-02-01       Impact factor: 3.154

7.  Comprehensive molecular portraits of human breast tumours.

Authors: 
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

  7 in total
  5 in total

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Journal:  Environ Health Perspect       Date:  2015-06-26       Impact factor: 9.031

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Journal:  Genome Biol       Date:  2019-03-07       Impact factor: 13.583

5.  Predictors of Successful Yttrium-90 Radioembolization Bridging or Downstaging in Patients with Hepatocellular Carcinoma.

Authors:  Alexander Villalobos; William Wagstaff; Mian Guo; James Zhang; Zachary Bercu; Morgan J Whitmore; Mircea M Cristescu; Bill S Majdalany; Joel Wedd; Mehmet Akce; Joseph Magliocca; Nima Kokabi
Journal:  Can J Gastroenterol Hepatol       Date:  2021-07-22
  5 in total

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