| Literature DB >> 26241311 |
Clara Barrios1, Michelle Beaumont2, Tess Pallister2, Judith Villar3, Julia K Goodrich4, Andrew Clark4, Julio Pascual5, Ruth E Ley4, Tim D Spector2, Jordana T Bell2, Cristina Menni2.
Abstract
INTRODUCTION: Several circulating metabolites derived from bacterial protein fermentation have been found to be inversely associated with renal function but the timing and disease severity is unclear. The aim of this study is to explore the relationship between indoxyl-sulfate, p-cresyl-sulfate, phenylacetylglutamine and gut-microbial profiles in early renal function decline.Entities:
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Year: 2015 PMID: 26241311 PMCID: PMC4524635 DOI: 10.1371/journal.pone.0134311
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Association and correlation of the metabolites and the eGFR.
| Metabolites | eGFR |
| |
|---|---|---|---|
| Beta(SE) | p | ||
| Indoxyl-sulphate | -2.74 (0.24) | 8.8x10-29 | 0.24[0.12;0.37] |
| p-cresyl-sulphate | -1.99 (0.24) | 4.6x10-16 | 0.36[0.28;0.40] |
| Phenylacetylglutamine | -2.73 (0.25) | 1.2x10-25 | 0.33[0.21;0.44] |
eGFR = estimated glomerular filtration rate. h = Heritability.
*heritability estimates come from Shin SY et al Nat Genet 2014 [
Operational taxonomic units (OTUs) belonging to the order Clostridiales and represented by Ruminococcaceae, Christensenellaceae and Lachnospiraceae families.
Table shows those significantly associated with Indoxyl sulfate and phenylacetylglutamine, the nominally associated with p-Cresyl sulfate and its association with the eGFR.
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| 194297 | Clostridiales | Ruminococcaceae | Ruminococcus | 0.13 [0;0.25] | 0.09(0.02) | 0.0002 | 0.020 | -0.86(0.44) | 0.049 |
| 316732 | Clostridiales | Lachnospiraceae | Lachnospira | 0.2 [0;0.34] | 0.04(0.01) | 0.0006 | 0.036 | 0.02(0.20) | 0.092 |
| 4408801 | Clostridiales | Ruminococcaceae | Oscillospira | 0.23 [0;0.35] | 0.12(0.03) | 0.0007 | 0.038 | 0.25(0.54) | 0.063 |
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| 147969 | Clostridiales | Ruminococcaceae | Ruminococcus | 0 [0;0.0] | 0.03(0.009) | 0.002 | 0.057 | -0.06(0.22) | 0.077 |
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| Collapsed | Clostridiales | Lachnospiraceae | Unclassified | 0.21 [0;0.35] | -0.02(0.06) | 0.0011 | 0.047 | 0.21(0.09) | 0.028 |
| 4483337 | Clostridiales | Lachnospiraceae | Unclassified | 0 [0;0.3] | -0.08(0.02) | 0.0002 | 0.021 | 0.67(0.33) | 0.043 |
| 177520 | Clostridiales | Lachnospiraceae | Roseburia faecis | 0 [0;0.0] | -0.17(0.04) | 0.0002 | 0.021 | 1.21(0.63) | 0.056 |
| 192406 | Clostridiales | Ruminococcaceae | Unclassified | 0.12 [0;0.24] | -0.07(0.01) | 2.92x10-5 | 0.009 | 0.40(0.26) | 0.133 |
| Collapsed | Clostridiales | Lachnospiraceae | Unclassified | 0.23 [0;0.35] | -0.03(0.01) | 0.0007 | 0.036 | 0.22(0.15) | 0.145 |
| 190162 | Clostridiales | Lachnospiraceae | Blautia | 0.16 [0;0.29] | -0.16(0.04) | 0.0005 | 0.033 | 0.95(0.68) | 0.163 |
| 199710 | Clostridiales | Christensenellaceae | Unclassified | 0.14 [0;0.29] | 0.18(0.05) | 0.0011 | 0.046 | -1.03(0.76) | 0.175 |
| 195465 | Clostridiales | Lachnospiraceae | Unclassified | 0.02 [0;0.25] | -0.16(0.05) | 0.0009 | 0.043 | 0.94(0.71) | 0.184 |
| 289734 | Clostridiales | Lachnospiraceae | Unclassified | 0.29 [0;0.41] | -0.05(0.01) | 0.0002 | 0.019 | 0.25(0.19) | 0.190 |
| 177515 | Clostridiales | Lachnospiraceae | Roseburia | 0 [0;0.24] | -0.04(0.01) | 0.0009 | 0.041 | 0.22(0.17) | 0.208 |
| 295258 | Clostridiales | Ruminococcaceae | Unclassified | 0.15 [0;0.28] | 0.09(0.02) | 0.0005 | 0.033 | -0.43(0.35) | 0.170 |
| 175761 | Clostridiales | Ruminococcaceae | Unclassified | 0.15 [0;0.29] | 0.26(0.08) | 0.0011 | 0.046 | -1.3(1.09) | 0.223 |
| 181756 | Clostridiales | Lachnospiraceae | Blautia | 0 [0;0.0] | -0.22(0.06) | 0.0003 | 0.026 | 1.04(0.87) | 0.232 |
| 292735 | Clostridiales | Lachnospiraceae | Blautia | 0.03 [0;0.36] | -0.11(0.02) | 0.0002 | 0.019 | 0.46(0.40) | 0.253 |
| 197930 | Clostridiales | Lachnospiraceae | Unclassified | 0.01 [0;0.14] | -0.22(0.05) | 0.0001 | 0.015 | -0.85(0.79) | 0.283 |
| 317677 | Clostridiales | Ruminococcaceae | Unclassified | 0.06 [0;0.2] | -0.23(0.06) | 0.0003 | 0.022 | -0.91(0.93) | 0.330 |
| 181485 | Clostridiales | Lachnospiraceae | Ruminococcus | 0 [0;0.0] | -0.23(0.07) | 0.0010 | 0.044 | 0.91(0.95) | 0.341 |
| 194488 | Clostridiales | Ruminococcaceae | Unclassified | 0 [0;0.0] | 0.22(0.05) | 0.0002 | 0.021 | 0.69(0.76) | 0.365 |
| 4446669 | Clostridiales | Ruminococcaceae | Unclassified | 0 [0;0.0] | 0.21(0.06) | 0.0006 | 0.035 | -0.68(0.82) | 0.408 |
| 186955 | Clostridiales | Lachnospiraceae | Unclassified | 0.09 [0;0.23] | -0.24(0.05) | 2.69x10-5 | 0.009 | 0.62(0.78) | 0.426 |
| 308544 | Clostridiales | Ruminococcaceae | Unclassified | 0.21 [0;0.38] | -0.10(0.03) | 0.0011 | 0.047 | 0.33(0.43) | 0.370 |
| 176604 | Clostridiales | Lachnospiraceae | Unclassified | 0.16 [0;0.29] | -0.12(0.03) | 0.0002 | 0.019 | 0.32(0.43) | 0.454 |
| 187917 | Clostridiales | Ruminococcaceae | Unclassified | 0.06 [0;0.26] | 0.13(0.03) | 0.0001 | 0.018 | -0.31(0.46) | 0.500 |
| Collapsed | Clostridiales | Lachnospiraceae |
| 0.04 [0;0.63] | -0.04(0.01) | 9.33x10-6 | 0.006 | 0.08(0.13) | 0.512 |
| 199430 | Clostridiales | Ruminococcaceae | Faecalibacterium prausnitzii | 0.12 [0;0.25] | -0.17(0.05) | 0.0007 | 0.037 | 0.43(0.69) | 0.530 |
| 174288 | Clostridiales | Ruminococcaceae | Unclassified | 0.03 [0;0.16] | -0.16(0.04) | 0.0005 | 0.032 | -0.41(0.66) | 0.531 |
| 1740283 | Clostridiales | Lachnospiraceae | Roseburia | 0.04 [0;0.17] | -0.21(0.05) | 0.0001 | 0.017 | 0.46(0.77) | 0.545 |
| Collapsed | Clostridiales | Christensenellaceae | Unclassified | 0.38 [0.21;0.5] | 0.07(0.01) | 3.54x10-7 | 0.001 | -0.11(0.19) | 0.550 |
| 4217963 | Clostridiales | Lachnospiraceae | Unclassified | 0.05 [0;0.18] | -0.29(0.06) | 1.26x10-5 | 0.006 | 0.51(0.9) | 0.572 |
| Collapsed | Clostridiales | Christensenellaceae | Unclassified | 0.38 [0.21;0.49] | 0.07(0.01) | 4.75x10-5 | 0.001 | -0.10(0.19) | 0.580 |
| 2298935 | Clostridiales | Lachnospiraceae | Unclassified | 0.01 [0;0.25] | -0.11(0.03) | 0.0002 | 0.021 | 0.22(0.42) | 0.604 |
| 4332082 | Clostridiales | Lachnospiraceae | Roseburia | 0.19 [0;0.31] | -0.21(0.05) | 0.0003 | 0.026 | 0.40(0.79) | 0.613 |
| 199761 | Clostridiales | Ruminococcaceae | Unclassified | 0.11 [0;0.24] | -0.08(0.02) | 0.0006 | 0.033 | 0.16(0.32) | 0.615 |
| 175509 | Clostridiales | Lachnospiraceae | Blautia | 0.01 [0;0.14] | -0.36(0.09) | 0.0001 | 0.016 | 0.57(1.26) | 0.647 |
| 3134492 | Clostridiales | Lachnospiraceae | Unclassified | 0.02 [0;0.24] | -0.06(0.01) | 3.64x10-5 | 0.016 | 0.09(0.20) | 0.651 |
| 231952 | Clostridiales | Christensenellaceae | Unclassified | 0.07 [0;0.21] | 0.24(0.05) | 1.58x10-5 | 0.007 | -0.33(0.76) | 0.620 |
| 334336 | Clostridiales | Ruminococcaceae | Unclassified | 0.08 [0;0.21] | -0.19(0.05) | 0.0009 | 0.042 | -0.30(0.75) | 0.668 |
| 313593 | Clostridiales | Lachnospiraceae | Roseburia | 0 [0;0.11] | -0.11(0.02) | 0.0003 | 0.021 | -0.16(0.40) | 0.690 |
| 3926480 | Clostridiales | Lachnospiraceae | Roseburia | 0.06 [0;0.19] | -0.06(0.01) | 0.0007 | 0.037 | -0.10(0.25) | 0.693 |
| 187447 | Clostridiales | Lachnospiraceae | Roseburia | 0.02 [0;0.15] | -0.15(0.04) | 0.0005 | 0.032 | -0.22(0.63) | 0.723 |
| 4094259 | Clostridiales | Ruminococcaceae | Unclassified | 0.18 [0;0.3] | -0.25(0.07) | 0.0008 | 0.039 | 0.34(1.05) | 0.739 |
| 190100 | Clostridiales | Lachnospiraceae | Blautia | 0.15 [0;0.28] | -0.16(0.05) | 0.0012 | 0.047 | 0.18(0.71) | 0.797 |
| 4468466 | Clostridiales | Ruminococcaceae | Unclassified | 0.34 [0.1;0.45] | 0.04(0.01) | 0.0001 | 0.015 | 0.03(0.15) | 0.809 |
| 3265161 | Clostridiales | Lachnospiraceae | Unclassified | 0.18 [0;0.31] | -0.20(0.05) | 4.89x10-5 | 0.012 | -012(0.60) | 0.848 |
| 4202174 | Clostridiales | Clostridiaceae | Unclassified | 0.15 [0;0.37] | 0.07(0.02) | 0.0008 | 0.040 | -0.05(0.32) | 0.864 |
| Collapsed | Clostridiales | Ruminococcaceae | Oscillospira | 0.13 [0;0.26] | 0.09(0.02) | 0.0006 | 0.034 | 0.06(0.37) | 0.868 |
| 2250985 | Clostridiales | Lachnospiraceae | Roseburia | 0.10 [0;0.24] | -0.15(0.04) | 0.0003 | 0.025 | -0.08(0.55) | 0.887 |
| 125624 | Clostridiales | Lachnospiraceae | Unclassified | 0.18 [0;0.15] | -0.05(0.01) | 0.0001 | 0.015 | 0.02(0.21) | 0.889 |
| 4370941 | Clostridiales | Ruminococcaceae | Unclassified | 0.28 [0.11;0.4] | 0.19(0.04) | 0.0001 | 0.015 | -0.05(0.65) | 0.929 |
| 3393191 | Clostridiales | Lachnospiraceae | Roseburia | 0.05 [0;0.18] | -0.14(0.04) | 0.0007 | 0.038 | -0.03(0.59) | 0.957 |
| 730906 | Clostridiales | Ruminococcaceae | Unclassified | 0 [0;0.0] | -0.24(0.07) | 0.0008 | 0.038 | 0.04(0.96) | 0.960 |
| 300374 | Clostridiales | Ruminococcaceae | Oscillospira | 0.27 [0.11;0.3] | 0.23(0.06) | 0.0002 | 0.020 | 0.01(0.85) | 0.983 |
* Heritability estimates comes from Goodrich JK et al. Cell 2014 [29].
**qval; is the significant threshold after apply false discovery rate (FDR <5%) adjustment. eGFR = estimated glomerular filtration rate.
General Characteristics of the study population.
Left column: Characteristics of population with renal and plasma metabolites data analyzed. Right column: Characteristics of sub-population with faecal microbiota data analyzed.
| Metabolites | Microbiota | |
|---|---|---|
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| 4439 | 855 |
|
| 53.04±14.08 | 58.39±10.88 |
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| 1795:1980:664 | 288:414:152 |
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| 4162 (93.7) | 840 (98.2) |
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| 25.94±4.79 | 26.14±4.77 |
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| 0.83±0.25 | 0.80±0.16 |
|
| 84.93±16.85 | 83.06±15.42 |
|
| 331 (7.4) | 62 (7.2) |
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| 78 (1.7) | 21 (2.4) |
CKD = Chronic Kidney Disease. eGFR = estimated glomerular filtration rate (CKD-EPI equation). MZ = monozygotic, DZ = dizygotic. Values for categorical variables are given as n (percentage); values for continuous variable as mean (± SD).