Literature DB >> 26241209

Computational and Practical Aspects of Drug Repositioning.

Tudor I Oprea1, John P Overington2.   

Abstract

The concept of the hypothesis-driven or observational-based expansion of the therapeutic application of drugs is very seductive. This is due to a number of factors, such as lower cost of development, higher probability of success, near-term clinical potential, patient and societal benefit, and also the ability to apply the approach to rare, orphan, and underresearched diseases. Another highly attractive aspect is that the "barrier to entry" is low, at least in comparison to a full drug discovery operation. The availability of high-performance computing, and databases of various forms have also enhanced the ability to pose reasonable and testable hypotheses for drug repurposing, rescue, and repositioning. In this article we discuss several factors that are currently underdeveloped, or could benefit from clearer definition in articles presenting such work. We propose a classification scheme-drug repositioning evidence level (DREL)-for all drug repositioning projects, according to the level of scientific evidence. DREL ranges from zero, which refers to predictions that lack any experimental support, to four, which refers to drugs approved for the new indication. We also present a set of simple concepts that can allow rapid and effective filtering of hypotheses, leading to a focus on those that are most likely to lead to practical safe applications of an existing drug. Some promising repurposing leads for malaria (DREL-1) and amoebic dysentery (DREL-2) are discussed.

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Year:  2015        PMID: 26241209      PMCID: PMC4533090          DOI: 10.1089/adt.2015.29011.tiodrrr

Source DB:  PubMed          Journal:  Assay Drug Dev Technol        ISSN: 1540-658X            Impact factor:   1.738


  13 in total

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Journal:  Science       Date:  2011-08-05       Impact factor: 47.728

2.  Consensus-based evaluation of clinical significance and management of anticancer drug interactions.

Authors:  Frank G A Jansman; An K L Reyners; Eric N van Roon; Carolien H Smorenburg; Helgi H Helgason; Marianne le Comte; Brigit M Wensveen; Annemieke M A van den Tweel; Mieke de Blois; Wilma Kwee; Adrian L Kerremans; Jacobus R B J Brouwers
Journal:  Clin Ther       Date:  2011-04-02       Impact factor: 3.393

3.  A quality alert and call for improved curation of public chemistry databases.

Authors:  Antony J Williams; Sean Ekins
Journal:  Drug Discov Today       Date:  2011-07-30       Impact factor: 7.851

4.  Drug Repurposing from an Academic Perspective.

Authors:  Tudor I Oprea; Julie E Bauman; Cristian G Bologa; Tione Buranda; Alexandre Chigaev; Bruce S Edwards; Jonathan W Jarvik; Hattie D Gresham; Mark K Haynes; Brian Hjelle; Robert Hromas; Laurie Hudson; Debra A Mackenzie; Carolyn Y Muller; John C Reed; Peter C Simons; Yelena Smagley; Juan Strouse; Zurab Surviladze; Todd Thompson; Oleg Ursu; Anna Waller; Angela Wandinger-Ness; Stuart S Winter; Yang Wu; Susan M Young; Richard S Larson; Cheryl Willman; Larry A Sklar
Journal:  Drug Discov Today Ther Strateg       Date:  2011

Review 5.  The pharmacology and clinical uses of tamoxifen.

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6.  Preclinical enantioselective pharmacology of (R)- and (S)- ketorolac.

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Journal:  J Clin Pharmacol       Date:  1998-02       Impact factor: 3.126

7.  The NCGC pharmaceutical collection: a comprehensive resource of clinically approved drugs enabling repurposing and chemical genomics.

Authors:  Ruili Huang; Noel Southall; Yuhong Wang; Adam Yasgar; Paul Shinn; Ajit Jadhav; Dac-Trung Nguyen; Christopher P Austin
Journal:  Sci Transl Med       Date:  2011-04-27       Impact factor: 17.956

8.  Steady-state concentrations of imipramine and its metabolites in relation to the sparteine/debrisoquine polymorphism.

Authors:  K Brøsen; R Klysner; L F Gram; S V Otton; P Bech; L Bertilsson
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9.  Comprehensive evaluation of tamoxifen sequential biotransformation by the human cytochrome P450 system in vitro: prominent roles for CYP3A and CYP2D6.

Authors:  Zeruesenay Desta; Bryan A Ward; Nadia V Soukhova; David A Flockhart
Journal:  J Pharmacol Exp Ther       Date:  2004-05-24       Impact factor: 4.030

10.  A high-throughput drug screen for Entamoeba histolytica identifies a new lead and target.

Authors:  Anjan Debnath; Derek Parsonage; Rosa M Andrade; Chen He; Eduardo R Cobo; Ken Hirata; Steven Chen; Guillermina García-Rivera; Esther Orozco; Máximo B Martínez; Shamila S Gunatilleke; Amy M Barrios; Michelle R Arkin; Leslie B Poole; James H McKerrow; Sharon L Reed
Journal:  Nat Med       Date:  2012-06       Impact factor: 53.440

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  24 in total

Review 1.  From gene networks to drugs: systems pharmacology approaches for AUD.

Authors:  Laura B Ferguson; R Adron Harris; Roy Dayne Mayfield
Journal:  Psychopharmacology (Berl)       Date:  2018-03-01       Impact factor: 4.530

2.  Connectivity map-based drug repositioning of bortezomib to reverse the metastatic effect of GALNT14 in lung cancer.

Authors:  Ok-Seon Kwon; Haeseung Lee; Hyeon-Joon Kong; Eun-Ji Kwon; Ji Eun Park; Wooin Lee; Seungmin Kang; Mirang Kim; Wankyu Kim; Hyuk-Jin Cha
Journal:  Oncogene       Date:  2020-05-09       Impact factor: 9.867

3.  Discovery of novel polyamine analogs with anti-protozoal activity by computer guided drug repositioning.

Authors:  Lucas N Alberca; María L Sbaraglini; Darío Balcazar; Laura Fraccaroli; Carolina Carrillo; Andrea Medeiros; Diego Benitez; Marcelo Comini; Alan Talevi
Journal:  J Comput Aided Mol Des       Date:  2016-02-18       Impact factor: 3.686

4.  Integrative Analysis of Motor Neuron and Microglial Transcriptomes from SOD1G93A Mice Models Uncover Potential Drug Treatments for ALS.

Authors:  Elif Kubat Oktem; Busra Aydin; Metin Yazar; Kazim Yalcin Arga
Journal:  J Mol Neurosci       Date:  2022-09-30       Impact factor: 2.866

5.  Design and application of a knowledge network for automatic prioritization of drug mechanisms.

Authors:  Michael Mayers; Roger Tu; Dylan Steinecke; Tong Shu Li; Núria Queralt-Rosinach; Andrew I Su
Journal:  Bioinformatics       Date:  2022-05-13       Impact factor: 6.931

6.  Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer.

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Journal:  NAR Genom Bioinform       Date:  2021-12-08

7.  DrugCentral: online drug compendium.

Authors:  Oleg Ursu; Jayme Holmes; Jeffrey Knockel; Cristian G Bologa; Jeremy J Yang; Stephen L Mathias; Stuart J Nelson; Tudor I Oprea
Journal:  Nucleic Acids Res       Date:  2016-10-26       Impact factor: 16.971

Review 8.  Giving Drugs a Second Chance: Overcoming Regulatory and Financial Hurdles in Repurposing Approved Drugs As Cancer Therapeutics.

Authors:  J Javier Hernandez; Michael Pryszlak; Lindsay Smith; Connor Yanchus; Naheed Kurji; Vijay M Shahani; Steven V Molinski
Journal:  Front Oncol       Date:  2017-11-14       Impact factor: 6.244

Review 9.  The Contribution of Clinical Pharmacologists in Precision Medicine: An Opportunity for Health Care Improvement.

Authors:  Davide Grisafi; Alessandro Ceschi; Veronica Avalos Clerici; Francesco Scaglione
Journal:  Curr Ther Res Clin Exp       Date:  2021-04-01

10.  Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery.

Authors:  Zhilong Jia; Ying Liu; Naiyang Guan; Xiaochen Bo; Zhigang Luo; Michael R Barnes
Journal:  BMC Genomics       Date:  2016-05-27       Impact factor: 3.969

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