Literature DB >> 26240877

A new twist on a very old binary similarity coefficient.

John Alroy.   

Abstract

Pairwise similarity coefficients are downward biased when samples only record presences and sampling is partial. A simple but forgotten index proposed by Stephen Forbes in 1907 can help solve this problem. His original equation requires knowing the number of species absent in both samples that could have been present. It is proposed that this count should simply be ignored and that the coefficient should be adjusted using a simple heuristic correction. Four analyses show that the corrected equation outperforms the Dice and Simpson indices, which are highly correlated with many others. In two-sample simulations, similarity is almost always closer to the assumed value when the species pool size and sampling intensity are varied, regardless of whether the underlying abundance distribution is uniform, log-normal, or geometric. The index is also much more robust when sampling is unequal. An analysis of bat samples from peninsular Malaysia buttresses these conclusions. The corrected coefficient also indicates that local assemblages of North American mammals are random subsamples of larger species pools by returning similarity of values of around 1, and it suggests a more consistent relationship between biome-scale comparisons and local-scale comparisons. Finally, it yields a better-dispersed pattern when the biome-scale inventories are ordinated. If these results are generalizable, then the new and old equation should see wide application, potentially taking the place of the two most commonly used alternatives (the interrelated Dice and Jaccard indices) whenever sampling is incomplete.

Mesh:

Year:  2015        PMID: 26240877     DOI: 10.1890/14-0471.1

Source DB:  PubMed          Journal:  Ecology        ISSN: 0012-9658            Impact factor:   5.499


  13 in total

1.  Olson's Extinction and the latitudinal biodiversity gradient of tetrapods in the Permian.

Authors:  Neil Brocklehurst; Michael O Day; Bruce S Rubidge; Jörg Fröbisch
Journal:  Proc Biol Sci       Date:  2017-04-12       Impact factor: 5.349

2.  An observational, prospective study to evaluate the preoperative planning tool "CI-Wizard" for cochlear implant surgery.

Authors:  Markus Pirlich; Mary Tittmann; Daniela Franz; Andreas Dietz; Mathias Hofer
Journal:  Eur Arch Otorhinolaryngol       Date:  2016-09-02       Impact factor: 2.503

3.  Global diversity dynamics in the fossil record are regionally heterogeneous.

Authors:  Joseph T Flannery-Sutherland; Daniele Silvestro; Michael J Benton
Journal:  Nat Commun       Date:  2022-05-18       Impact factor: 17.694

4.  Late quaternary biotic homogenization of North American mammalian faunas.

Authors:  Danielle Fraser; Amelia Villaseñor; Anikó B Tóth; Meghan A Balk; Jussi T Eronen; W Andrew Barr; A K Behrensmeyer; Matt Davis; Andrew Du; J Tyler Faith; Gary R Graves; Nicholas J Gotelli; Advait M Jukar; Cindy V Looy; Brian J McGill; Joshua H Miller; Silvia Pineda-Munoz; Richard Potts; Alex B Shupinski; Laura C Soul; S Kathleen Lyons
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

5.  New radiometric 40Ar-39Ar dates and faunistic analyses refine evolutionary dynamics of Neogene vertebrate assemblages in southern South America.

Authors:  Francisco J Prevosti; Cristo O Romano; Analía M Forasiepi; Sidney Hemming; Ricardo Bonini; Adriana M Candela; Esperanza Cerdeño; M Carolina Madozzo Jaén; Pablo E Ortiz; François Pujos; Luciano Rasia; Gabriela I Schmidt; Matias Taglioretti; Ross D E MacPhee; Ulyses F J Pardiñas
Journal:  Sci Rep       Date:  2021-05-10       Impact factor: 4.379

6.  A comparison of clustering methods for biogeography with fossil datasets.

Authors:  Matthew J Vavrek
Journal:  PeerJ       Date:  2016-02-25       Impact factor: 2.984

7.  The Brazilian freshwater wetscape: Changes in tree community diversity and composition on climatic and geographic gradients.

Authors:  Florian Wittmann; Márcia C M Marques; Geraldo Damasceno Júnior; Jean Carlos Budke; Maria T F Piedade; Astrid de Oliveira Wittmann; Juan Carlos Montero; Rafael L de Assis; Natália Targhetta; Pia Parolin; Wolfgang J Junk; J Ethan Householder
Journal:  PLoS One       Date:  2017-04-10       Impact factor: 3.240

8.  An examination of the impact of Olson's extinction on tetrapods from Texas.

Authors:  Neil Brocklehurst
Journal:  PeerJ       Date:  2018-05-15       Impact factor: 2.984

9.  The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniques.

Authors:  Troy J Myers; Karen H Black; Michael Archer; Suzanne J Hand
Journal:  PeerJ       Date:  2017-06-30       Impact factor: 2.984

10.  Different environmental gradients affect different measures of snake β-diversity in the Amazon rainforests.

Authors:  Rafael de Fraga; Miquéias Ferrão; Adam J Stow; William E Magnusson; Albertina P Lima
Journal:  PeerJ       Date:  2018-09-24       Impact factor: 2.984

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