Literature DB >> 26240450

Integrative taxonomy reveals an unexpected diversity in Geastrum section Geastrum (Geastrales, Basidiomycota).

J C Zamora1, F D Calonge1, M P Martín1.   

Abstract

A revision of the classification of Geastrum sect. Geastrum is presented on the basis of an integrative taxonomic approach, which involves the study of morphological, molecular, ecological, and chorological data. Four DNA regions are analysed: the ITS and LSU nrDNA, rpb1, and atp6. Phylogenetic reconstructions include 95 ingroup samples and show five main clades, which are considered as five subsections, one of them proposed as new (G. subsect. Hungarica), and a total of 27 lineages recognizable at species level. Discriminant function analyses, ANOVAs and Tukey's HSD tests on more than 500 basidiomata reveal the utility of several quantitative morphological characters for species delimitation. As a result of the combination of the different sources of taxonomic information, a revised taxonomy is presented and seven new species, viz., G. austrominimum, G. benitoi, G. britannicum, G. kuharii, G. meridionale, G. papinuttii, and G. thanatophilum, are proposed.

Entities:  

Keywords:  Geastraceae; chorology; ecology; morphology; phylogenetics; species delimitation

Year:  2015        PMID: 26240450      PMCID: PMC4510276          DOI: 10.3767/003158515X687443

Source DB:  PubMed          Journal:  Persoonia        ISSN: 0031-5850            Impact factor:   11.051


  29 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  A likelihood approach to estimating phylogeny from discrete morphological character data.

Authors:  P O Lewis
Journal:  Syst Biol       Date:  2001 Nov-Dec       Impact factor: 15.683

3.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

4.  AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.

Authors:  Johan A A Nylander; James C Wilgenbusch; Dan L Warren; David L Swofford
Journal:  Bioinformatics       Date:  2007-08-30       Impact factor: 6.937

Review 5.  Integrative taxonomy: a multisource approach to exploring biodiversity.

Authors:  Birgit C Schlick-Steiner; Florian M Steiner; Bernhard Seifert; Christian Stauffer; Erhard Christian; Ross H Crozier
Journal:  Annu Rev Entomol       Date:  2010       Impact factor: 19.686

6.  Use of atp6 in fungal phylogenetics: an example from the boletales.

Authors:  A M Kretzer; T D Bruns
Journal:  Mol Phylogenet Evol       Date:  1999-12       Impact factor: 4.286

7.  Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

Authors:  Danielle L Edwards; L Lacey Knowles
Journal:  Proc Biol Sci       Date:  2014-01-08       Impact factor: 5.349

8.  Molecular and morphological characterization of the willow rust fungus, Melampsora epitea, from arctic and temperate hosts in North America.

Authors:  Jason A Smith; Robert A Blanchette; George Newcombe
Journal:  Mycologia       Date:  2004 Nov-Dec       Impact factor: 2.696

9.  Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species.

Authors:  R Vilgalys; M Hester
Journal:  J Bacteriol       Date:  1990-08       Impact factor: 3.490

10.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

View more
  6 in total

1.  Fungal Planet description sheets: 469-557.

Authors:  P W Crous; M J Wingfield; T I Burgess; G E St J Hardy; C Crane; S Barrett; J F Cano-Lira; J J Le Roux; R Thangavel; J Guarro; A M Stchigel; M P Martín; D S Alfredo; P A Barber; R W Barreto; I G Baseia; J Cano-Canals; R Cheewangkoon; R J Ferreira; J Gené; C Lechat; G Moreno; F Roets; R G Shivas; J O Sousa; Y P Tan; N P Wiederhold; S E Abell; T Accioly; J L Albizu; J L Alves; Z I Antoniolli; N Aplin; J Araújo; M Arzanlou; J D P Bezerra; J-P Bouchara; J R Carlavilla; A Castillo; V L Castroagudín; P C Ceresini; G F Claridge; G Coelho; V R M Coimbra; L A Costa; K C da Cunha; S S da Silva; R Daniel; Z W de Beer; M Dueñas; J Edwards; P Enwistle; P O Fiuza; J Fournier; D García; T B Gibertoni; S Giraud; M Guevara-Suarez; L F P Gusmão; S Haituk; M Heykoop; Y Hirooka; T A Hofmann; J Houbraken; D P Hughes; I Kautmanová; O Koppel; O Koukol; E Larsson; K P D Latha; D H Lee; D O Lisboa; W S Lisboa; Á López-Villalba; J L N Maciel; P Manimohan; J L Manjón; S Marincowitz; T S Marney; M Meijer; A N Miller; I Olariaga; L M Paiva; M Piepenbring; J C Poveda-Molero; K N A Raj; H A Raja; A Rougeron; I Salcedo; R Samadi; T A B Santos; K Scarlett; K A Seifert; L A Shuttleworth; G A Silva; M Silva; J P Z Siqueira; C M Souza-Motta; S L Stephenson; D A Sutton; N Tamakeaw; M T Telleria; N Valenzuela-Lopez; A Viljoen; C M Visagie; A Vizzini; F Wartchow; B D Wingfield; E Yurchenko; J C Zamora; J Z Groenewald
Journal:  Persoonia       Date:  2016-12-21       Impact factor: 11.051

2.  Hygrophorus sect. Olivaceoumbrini: new boundaries, extended biogeography and unexpected diversity unravelled by transatlantic studies.

Authors:  J-M Bellanger; R Lebeuf; E Sesli; M Loizides; C Schwarz; P-A Moreau; K Liimatainen; E Larsson
Journal:  Persoonia       Date:  2021-07-02       Impact factor: 11.658

Review 3.  Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes.

Authors:  Lotus A Lofgren; Jason E Stajich
Journal:  Curr Biol       Date:  2021-10-11       Impact factor: 10.900

4.  Fungal Planet description sheets: 371-399.

Authors:  P W Crous; M J Wingfield; J J Le Roux; D M Richardson; D Strasberg; R G Shivas; P Alvarado; J Edwards; G Moreno; R Sharma; M S Sonawane; Y P Tan; A Altés; T Barasubiye; C W Barnes; R A Blanchette; D Boertmann; A Bogo; J R Carlavilla; R Cheewangkoon; R Daniel; Z W de Beer; M de Jesús Yáñez-Morales; T A Duong; J Fernández-Vicente; A D W Geering; D I Guest; B W Held; M Heykoop; V Hubka; A M Ismail; S C Kajale; W Khemmuk; M Kolařík; R Kurli; R Lebeuf; C A Lévesque; L Lombard; D Magista; J L Manjón; S Marincowitz; J M Mohedano; A Nováková; N H Oberlies; E C Otto; N D Paguigan; I G Pascoe; J L Pérez-Butrón; G Perrone; P Rahi; H A Raja; T Rintoul; R M V Sanhueza; K Scarlett; Y S Shouche; L A Shuttleworth; P W J Taylor; R G Thorn; L L Vawdrey; R Solano-Vidal; A Voitk; P T W Wong; A R Wood; J C Zamora; J Z Groenewald
Journal:  Persoonia       Date:  2015-12-04       Impact factor: 11.051

5.  Hidden fungal diversity from the Neotropics: Geastrum hirsutum, G. schweinitzii (Basidiomycota, Geastrales) and their allies.

Authors:  Thiago Accioly; Julieth O Sousa; Pierre-Arthur Moreau; Christophe Lécuru; Bianca D B Silva; Mélanie Roy; Monique Gardes; Iuri G Baseia; María P Martín
Journal:  PLoS One       Date:  2019-02-06       Impact factor: 3.240

6.  Integrative taxonomy reveals hidden species within a common fungal parasite of ladybirds.

Authors:  Danny Haelewaters; André De Kesel; Donald H Pfister
Journal:  Sci Rep       Date:  2018-10-29       Impact factor: 4.379

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.