Literature DB >> 26238548

Screening for simple sequence repeat markers in Puccinia striiformis tritici based on genomic sequence.

Gang-ming Zhan1, Fu-ping Wang1, Huai-yong Luo1, Shu-chang Jiang1, Wen-ming Zheng2, Li-li Huang1, Zhen-sheng Kang3.   

Abstract

Puccinia striiformis f. sp. tritici (Pst) is the obligate biotrophic fungus responsible for stripe rust wheat. In this study, we developed and characterized 20 polymorphic microsatellite markers from the genomic sequence of an isolate of Chinese Pst race CY32. Polymorphism at each simple sequence repeat (SSR) locus was determined using 32 Pst isolates from 7 countries. The number of alleles varied from 2 to 7 across isolates, and the observed and expected heterozygosities ranged from 0.33 to 0.97 (mean 0.62) and 0.23 to 0.73 (mean 0.51), respectively. As expected the genomic SSR markers were more polymorphic than the expressed sequence tag (EST)-SSR markers developed previously. These markers will be more useful for population genetics and molecular genetics studies in Pst.

Entities:  

Keywords:  Microsatellites; Simple sequence repeat; Stripe rust

Mesh：

Substances：

Year:  2015        PMID： 26238548      PMCID： PMC4534550          DOI： 10.1631/jzus.B1400364

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN： 1673-1581            Impact factor:   3.066


  18 in total

1.  Permanent genetic resources added to Molecular Ecology Resources Database 1 February 2013-31 March 2013.

Authors:  M C Arias; Christiane Atteke; S C Augusto; J Bailey; Pilar Bazaga; Luciano B Beheregaray; Laure Benoit; Rumsaïs Blatrix; Céline Born; R M Brito; Hai-kui Chen; Sara Covarrubias; Clara de Vega; Champlain Djiéto-Lordon; Marie-Pierre Dubois; F O Francisco; Cristina García; P H P Gonçalves; Clementina González; Carla Gutiérrez-Rodríguez; Michael P Hammer; Carlos M Herrera; H Itoh; S Kamimura; H Karaoglu; S Kojima; Shou-Li Li; Hannah J Ling; Pável F Matos-Maraví; Doyle McKey; Judicaël Mezui-M'Eko; Juan Francisco Ornelas; R F Park; María I Pozo; Satu Ramula; Cristina Rigueiro; Jonathan Sandoval-Castillo; L R Santiago; Miyuki M Seino; Chang-Bing Song; H Takeshima; Anti Vasemägi; C R Wellings; Ji Yan; Du Yu-Zhou; Chang-Rong Zhang; Tian-Yun Zhang
Journal:  Mol Ecol Resour       Date:  2013-05-20       Impact factor: 7.090

2.  Isolation of microsatellite loci from expressed sequence tag library of Puccinia striiformis f. sp. tritici.

Authors:  C Q Chen; W M Zheng; H Buchenauer; L L Huang; N H Lu; Z S Kang
Journal:  Mol Ecol Resour       Date:  2008-10-21       Impact factor: 7.090

3.  Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici.

Authors:  Sajid Ali; Pierre Gladieux; Hidayatur Rahman; Muhammad S Saqib; Muhammad Fiaz; Habib Ahmad; Marc Leconte; Angélique Gautier; Annemarie F Justesen; Mogens S Hovmøller; Jérôme Enjalbert; Claude de Vallavieille-Pope
Journal:  Mol Ecol       Date:  2014-01-20       Impact factor: 6.185

4.  Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host.

Authors:  Yue Jin; Les J Szabo; Martin Carson
Journal:  Phytopathology       Date:  2010-05       Impact factor: 4.025

5.  Comparative virulence phenotypes and molecular genotypes of Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen in China and the United States.

Authors:  Gangming Zhan; Xianming Chen; Zhensheng Kang; Lili Huang; Meinan Wang; Anmin Wan; Peng Cheng; Shiqin Cao; Shelin Jin
Journal:  Fungal Biol       Date:  2012-04-02

6.  Genetic evidence of local adaptation of wheat yellow rust (Puccinia striiformis f. sp. tritici) within France.

Authors:  J Enjalbert; X Duan; M Leconte; M S Hovmøller; C DE Vallavieille-Pope
Journal:  Mol Ecol       Date:  2005-06       Impact factor: 6.185

7.  Puccinia striiformis f.sp. tritici presents high diversity and recombination in the over-summering zone of Gansu, China.

Authors:  X Duan; A Tellier; A Wan; M Leconte; C de Vallavieille-Pope; J Enjalbert
Journal:  Mycologia       Date:  2010 Jan-Feb       Impact factor: 2.696

8.  Evidence of genetic recombination in wheat yellow rust populations of a Chinese oversummering area.

Authors:  M Mboup; M Leconte; A Gautier; A M Wan; W Chen; C de Vallavieille-Pope; J Enjalbert
Journal:  Fungal Genet Biol       Date:  2009-01-14       Impact factor: 3.495

Review 9.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

10.  Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici.

Authors:  Sajid Ali; Pierre Gladieux; Marc Leconte; Angélique Gautier; Annemarie F Justesen; Mogens S Hovmøller; Jérôme Enjalbert; Claude de Vallavieille-Pope
Journal:  PLoS Pathog       Date:  2014-01-23       Impact factor: 6.823
View more
  4 in total

1.  Population Genetic Structures of Puccinia striiformis f. sp. tritici in the Gansu-Ningxia Region and Hubei Province, China.

Authors:  Cuicui Wang; Bingbing Jiang; Junmin Liang; Leifu Li; Yilin Gu; Jintang Li; Yong Luo; Zhanhong Ma
Journal:  Genes (Basel)       Date:  2021-10-27       Impact factor: 4.096

2.  Genetic Characterization of Puccinia striiformis f. sp. tritici Populations from Different Wheat Cultivars Using Simple Sequence Repeats.

Authors:  Shuhe Wang; Chaofan Gao; Qiuyu Sun; Qi Liu; Cuicui Wang; Fangfang Guo; Zhanhong Ma
Journal:  J Fungi (Basel)       Date:  2022-07-03

3.  Genetic Relationships of Puccinia striiformis f. sp. tritici in Southwestern and Northwestern China.

Authors:  Bingbing Jiang; Cuicui Wang; Cunwu Guo; Xuan Lv; Wenfeng Gong; Jie Chang; Hongpan He; Jing Feng; Xianming Chen; Zhanhong Ma
Journal:  Microbiol Spectr       Date:  2022-07-27

4.  Dynamics of Verticillium dahliae race 1 population under managed agricultural ecosystems.

Authors:  Jie-Yin Chen; Dan-Dan Zhang; Jin-Qun Huang; Ran Li; Dan Wang; Jian Song; Krishna D Puri; Lin Yang; Zhi-Qiang Kong; Bang-Zhuo Tong; Jun-Jiao Li; Yu-Shan Huang; Ivan Simko; Steven J Klosterman; Xiao-Feng Dai; Krishna V Subbarao
Journal:  BMC Biol       Date:  2021-06-25       Impact factor: 7.431
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.