Literature DB >> 26236936

Metabolic and evolutionary origin of actin-binding polyketides from diverse organisms.

Reiko Ueoka1, Agustinus R Uria1, Silke Reiter1, Tetsushi Mori2, Petra Karbaum3, Eike E Peters1, Eric J N Helfrich1, Brandon I Morinaka1, Muriel Gugger4, Haruko Takeyama2, Shigeki Matsunaga5, Jörn Piel1.   

Abstract

Actin-targeting macrolides comprise a large, structurally diverse group of cytotoxins isolated from remarkably dissimilar micro- and macroorganisms. In spite of their disparate origins and structures, many of these compounds bind actin at the same site and exhibit structural relationships reminiscent of modular, combinatorial drug libraries. Here we investigate biosynthesis and evolution of three compound groups: misakinolides, scytophycin-type compounds and luminaolides. For misakinolides from the sponge Theonella swinhoei WA, our data suggest production by an uncultivated 'Entotheonella' symbiont, further supporting the relevance of these bacteria as sources of bioactive polyketides and peptides in sponges. Insights into misakinolide biosynthesis permitted targeted genome mining for other members, providing a cyanobacterial luminaolide producer as the first cultivated source for this dimeric compound family. The data indicate that this polyketide family is bacteria-derived and that the unusual macrolide diversity is the result of combinatorial pathway modularity for some compounds and of convergent evolution for others.

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Year:  2015        PMID: 26236936     DOI: 10.1038/nchembio.1870

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  47 in total

1.  Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries.

Authors:  Andreas Schramm; Bernhard M Fuchs; Jeppe L Nielsen; Mauro Tonolla; David A Stahl
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

Review 2.  Biosynthesis of polyketides by trans-AT polyketide synthases.

Authors:  Jörn Piel
Journal:  Nat Prod Rep       Date:  2010-05-12       Impact factor: 13.423

3.  Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts.

Authors:  C A Bewley; N D Holland; D J Faulkner
Journal:  Experientia       Date:  1996-07-15

Review 4.  DNA probes: applications of the principles of nucleic acid hybridization.

Authors:  J G Wetmur
Journal:  Crit Rev Biochem Mol Biol       Date:  1991       Impact factor: 8.250

5.  Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina.

Authors:  Sebastian Sudek; Nicole B Lopanik; Laura E Waggoner; Mark Hildebrand; Christine Anderson; Haibin Liu; Amrish Patel; David H Sherman; Margo G Haygood
Journal:  J Nat Prod       Date:  2007-01       Impact factor: 4.050

6.  Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses.

Authors:  Annette Kampa; Andrey N Gagunashvili; Tobias A M Gulder; Brandon I Morinaka; Cristina Daolio; Markus Godejohann; Vivian P W Miao; Jörn Piel; Ólafur S Andrésson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

7.  Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont.

Authors:  Toshiyuki Wakimoto; Yoko Egami; Yu Nakashima; Yukihiko Wakimoto; Takahiro Mori; Takayoshi Awakawa; Takuya Ito; Hiromichi Kenmoku; Yoshinori Asakawa; Jörn Piel; Ikuro Abe
Journal:  Nat Chem Biol       Date:  2014-06-29       Impact factor: 15.040

8.  A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles.

Authors:  Jörn Piel
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-14       Impact factor: 11.205

9.  Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting.

Authors:  Katja M Fisch; Cristian Gurgui; Nina Heycke; Sonia A van der Sar; Sally A Anderson; Victoria L Webb; Stefan Taudien; Matthias Platzer; Brent K Rubio; Sarah J Robinson; Phillip Crews; Jörn Piel
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

10.  Seaweed resistance to microbial attack: a targeted chemical defense against marine fungi.

Authors:  Julia Kubanek; Paul R Jensen; Paul A Keifer; M Cameron Sullards; Dwight O Collins; William Fenical
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-19       Impact factor: 11.205

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  33 in total

1.  Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges.

Authors:  Gerald Lackner; Eike Edzard Peters; Eric J N Helfrich; Jörn Piel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-03       Impact factor: 11.205

Review 2.  Chemical Ecology of Marine Sponges: New Opportunities through "-Omics".

Authors:  Valerie J Paul; Christopher J Freeman; Vinayak Agarwal
Journal:  Integr Comp Biol       Date:  2019-10-01       Impact factor: 3.326

Review 3.  Natural Products and the Gene Cluster Revolution.

Authors:  Paul R Jensen
Journal:  Trends Microbiol       Date:  2016-08-01       Impact factor: 17.079

4.  Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.

Authors:  Tetsushi Mori; Jackson K B Cahn; Micheal C Wilson; Roy A Meoded; Vincent Wiebach; Ana Flávia Canovas Martinez; Eric J N Helfrich; Andreas Albersmeier; Daniel Wibberg; Steven Dätwyler; Ray Keren; Adi Lavy; Christian Rückert; Micha Ilan; Jörn Kalinowski; Shigeki Matsunaga; Haruko Takeyama; Jörn Piel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-08       Impact factor: 11.205

Review 5.  Parallel lives of symbionts and hosts: chemical mutualism in marine animals.

Authors:  Maho Morita; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2018-04-25       Impact factor: 13.423

6.  Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome.

Authors:  Eric J N Helfrich; Christine M Vogel; Reiko Ueoka; Martin Schäfer; Florian Ryffel; Daniel B Müller; Silke Probst; Markus Kreuzer; Jörn Piel; Julia A Vorholt
Journal:  Nat Microbiol       Date:  2018-07-23       Impact factor: 17.745

7.  Portability and Structure of the Four-Helix Bundle Docking Domains of trans-Acyltransferase Modular Polyketide Synthases.

Authors:  Jia Zeng; Drew T Wagner; Zhicheng Zhang; Luisa Moretto; Janci D Addison; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2016-07-12       Impact factor: 5.100

8.  Origin of Chemical Diversity in Prochloron-Tunicate Symbiosis.

Authors:  Zhenjian Lin; Joshua P Torres; M Diarey Tianero; Jason C Kwan; Eric W Schmidt
Journal:  Appl Environ Microbiol       Date:  2016-05-31       Impact factor: 4.792

9.  Structural and Functional Studies of a Pyran Synthase Domain from a trans-Acyltransferase Assembly Line.

Authors:  Drew T Wagner; Zhicheng Zhang; Roy A Meoded; Alexis J Cepeda; Jörn Piel; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2018-03-01       Impact factor: 5.100

10.  A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products.

Authors:  Raphael Reher; Hyun Woo Kim; Chen Zhang; Huanru Henry Mao; Mingxun Wang; Louis-Félix Nothias; Andres Mauricio Caraballo-Rodriguez; Evgenia Glukhov; Bahar Teke; Tiago Leao; Kelsey L Alexander; Brendan M Duggan; Ezra L Van Everbroeck; Pieter C Dorrestein; Garrison W Cottrell; William H Gerwick
Journal:  J Am Chem Soc       Date:  2020-02-21       Impact factor: 15.419

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