Literature DB >> 26235949

Interfacial inhibitors.

Yves Pommier1, Evgeny Kiselev1, Christophe Marchand1.   

Abstract

Targeting macromolecular interface is a general mechanism by which natural products inactivate macromolecular complexes by stabilizing normally transient intermediates. Demonstrating interfacial inhibition mechanism ultimately relies on the resolution of drug-macromolecule structures. This review focuses on medicinal drugs that trap protein-DNA complexes by binding at protein-DNA interfaces. It provides proof-of-concept and detailed structural and mechanistic examples for topoisomerase inhibitors and HIV integrase inhibitors. Additional examples of recent interfacial inhibitors for protein-DNA interfaces are provided, as well as prospects for targeting previously 'undruggable' targets including transcription, replication and chromatin remodeling complexes. References and discussion are included for interfacial inhibitors of protein-protein interfaces. Published by Elsevier Ltd.

Entities:  

Keywords:  Chemotherapy; Integrase; Natural products; Pharmacology; Topoisomerase

Mesh:

Substances:

Year:  2015        PMID: 26235949      PMCID: PMC7747010          DOI: 10.1016/j.bmcl.2015.07.032

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  49 in total

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Authors:  R K Agrawal; J Frank
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2.  The mechanism of topoisomerase I poisoning by a camptothecin analog.

Authors:  Bart L Staker; Kathryn Hjerrild; Michael D Feese; Craig A Behnke; Alex B Burgin; Lance Stewart
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-08       Impact factor: 11.205

3.  Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Authors:  Daniel A Koster; Vincent Croquette; Cees Dekker; Stewart Shuman; Nynke H Dekker
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

4.  Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases.

Authors:  Ivan Laponogov; Maninder K Sohi; Dennis A Veselkov; Xiao-Su Pan; Ritica Sawhney; Andrew W Thompson; Katherine E McAuley; L Mark Fisher; Mark R Sanderson
Journal:  Nat Struct Mol Biol       Date:  2009-05-17       Impact factor: 15.369

Review 5.  All tangled up: how cells direct, manage and exploit topoisomerase function.

Authors:  Seychelle M Vos; Elsa M Tretter; Bryan H Schmidt; James M Berger
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

Review 6.  Topoisomerase I inhibitors: camptothecins and beyond.

Authors:  Yves Pommier
Journal:  Nat Rev Cancer       Date:  2006-10       Impact factor: 60.716

7.  Structural and functional analyses of the second-generation integrase strand transfer inhibitor dolutegravir (S/GSK1349572).

Authors:  Stephen Hare; Steven J Smith; Mathieu Métifiot; Albert Jaxa-Chamiec; Yves Pommier; Stephen H Hughes; Peter Cherepanov
Journal:  Mol Pharmacol       Date:  2011-06-30       Impact factor: 4.436

8.  Local sequence requirements for DNA cleavage by mammalian topoisomerase II in the presence of doxorubicin.

Authors:  G Capranico; K W Kohn; Y Pommier
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

9.  Structural basis of gate-DNA breakage and resealing by type II topoisomerases.

Authors:  Ivan Laponogov; Xiao-Su Pan; Dennis A Veselkov; Katherine E McAuley; L Mark Fisher; Mark R Sanderson
Journal:  PLoS One       Date:  2010-06-28       Impact factor: 3.240

10.  Mechanisms of camptothecin resistance by human topoisomerase I mutations.

Authors:  Jill E Chrencik; Bart L Staker; Alex B Burgin; Philippe Pourquier; Yves Pommier; Lance Stewart; Matthew R Redinbo
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

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  16 in total

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Authors:  Krishan K Pandey; Sibes Bera; Ke Shi; Hideki Aihara; Duane P Grandgenett
Journal:  J Biol Chem       Date:  2017-02-08       Impact factor: 5.157

Review 3.  Topoisomerases as anticancer targets.

Authors:  Justine L Delgado; Chao-Ming Hsieh; Nei-Li Chan; Hiroshi Hiasa
Journal:  Biochem J       Date:  2018-01-23       Impact factor: 3.857

Review 4.  Small-Molecule Screens: A Gateway to Cancer Therapeutic Agents with Case Studies of Food and Drug Administration-Approved Drugs.

Authors:  Nathan P Coussens; John C Braisted; Tyler Peryea; G Sitta Sittampalam; Anton Simeonov; Matthew D Hall
Journal:  Pharmacol Rev       Date:  2017-10       Impact factor: 25.468

5.  Carboxylate-functionalized foldamer inhibitors of HIV-1 integrase and Topoisomerase 1: artificial analogues of DNA mimic proteins.

Authors:  Valentina Corvaglia; Daniel Carbajo; Panchami Prabhakaran; Krzysztof Ziach; Pradeep Kumar Mandal; Victor Dos Santos; Carole Legeay; Rachel Vogel; Vincent Parissi; Philippe Pourquier; Ivan Huc
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

6.  Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development.

Authors:  Purushottam B Tiwari; Prem P Chapagain; Ahmed Seddek; Thirunavukkarasu Annamalai; Aykut Üren; Yuk-Ching Tse-Dinh
Journal:  ChemMedChem       Date:  2020-03-18       Impact factor: 3.466

Review 7.  DNA topoisomerase-targeting chemotherapeutics: what's new?

Authors:  Selma M Cuya; Mary-Ann Bjornsti; Robert C A M van Waardenburg
Journal:  Cancer Chemother Pharmacol       Date:  2017-05-20       Impact factor: 3.288

8.  Lipid-derived electrophiles mediate the effects of chemotherapeutic topoisomerase I poisons.

Authors:  Amy Flor; Donald Wolfgeher; Jing Li; Leslyn A Hanakahi; Stephen J Kron
Journal:  Cell Chem Biol       Date:  2020-12-21       Impact factor: 9.039

9.  topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB.

Authors:  Narimane Dahmane; Danièle Gadelle; Stéphane Delmas; Alexis Criscuolo; Stephan Eberhard; Nicole Desnoues; Sylvie Collin; Hongliang Zhang; Yves Pommier; Patrick Forterre; Guennadi Sezonov
Journal:  Nucleic Acids Res       Date:  2016-02-22       Impact factor: 16.971

10.  A signature of enhanced lipid metabolism, lipid peroxidation and aldehyde stress in therapy-induced senescence.

Authors:  Amy C Flor; Don Wolfgeher; Ding Wu; Stephen J Kron
Journal:  Cell Death Discov       Date:  2017-10-30
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