Literature DB >> 26231641

Nitrogen Cycling Potential of a Grassland Litter Microbial Community.

Michaeline B Nelson1, Renaud Berlemont2, Adam C Martiny2, Jennifer B H Martiny3.   

Abstract

Because microorganisms have different abilities to utilize nitrogen (N) through various assimilatory and dissimilatory pathways, microbial composition and diversity likely influence N cycling in an ecosystem. Terrestrial plant litter decomposition is often limited by N availability; however, little is known about the microorganisms involved in litter N cycling. In this study, we used metagenomics to characterize the potential N utilization of microbial communities in grassland plant litter. The frequencies of sequences associated with eight N cycling pathways differed by several orders of magnitude. Within a pathway, the distributions of these sequences among bacterial orders differed greatly. Many orders within the Actinobacteria and Proteobacteria appeared to be N cycling generalists, carrying genes from most (five or six) of the pathways. In contrast, orders from the Bacteroidetes were more specialized and carried genes for fewer (two or three) pathways. We also investigated how the abundance and composition of microbial N cycling genes differed over time and in response to two global change manipulations (drought and N addition). For many pathways, the abundance and composition of N cycling taxa differed over time, apparently reflecting precipitation patterns. In contrast to temporal variability, simulated global change had minor effects on N cycling potential. Overall, this study provides a blueprint for the genetic potential of N cycle processes in plant litter and a baseline for comparisons to other ecosystems.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26231641      PMCID: PMC4579426          DOI: 10.1128/AEM.02222-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   5.005


  40 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-27       Impact factor: 11.205

2.  Model projections of an imminent transition to a more arid climate in southwestern North America.

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3.  Soil microbial community responses to a decade of warming as revealed by comparative metagenomics.

Authors:  Chengwei Luo; Luis M Rodriguez-R; Eric R Johnston; Liyou Wu; Lei Cheng; Kai Xue; Qichao Tu; Ye Deng; Zhili He; Jason Zhou Shi; Mengting Maggie Yuan; Rebecca A Sherry; Dejun Li; Yiqi Luo; Edward A G Schuur; Patrick Chain; James M Tiedje; Jizhong Zhou; Konstantinos T Konstantinidis
Journal:  Appl Environ Microbiol       Date:  2013-12-27       Impact factor: 4.792

4.  Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Authors:  Noah Fierer; Jonathan W Leff; Byron J Adams; Uffe N Nielsen; Scott Thomas Bates; Christian L Lauber; Sarah Owens; Jack A Gilbert; Diana H Wall; J Gregory Caporaso
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

5.  Global-scale similarities in nitrogen release patterns during long-term decomposition.

Authors:  William Parton; Whendee L Silver; Ingrid C Burke; Leo Grassens; Mark E Harmon; William S Currie; Jennifer Y King; E Carol Adair; Leslie A Brandt; Stephen C Hart; Becky Fasth
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6.  Nitrate respiration in Pseudomonas stutzeri A15 and its involvement in rice and wheat root colonization.

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Journal:  Microbiol Res       Date:  2007-04-30       Impact factor: 5.415

7.  Temporal variation overshadows the response of leaf litter microbial communities to simulated global change.

Authors:  Kristin L Matulich; Claudia Weihe; Steven D Allison; Anthony S Amend; Renaud Berlemont; Michael L Goulden; Sarah Kimball; Adam C Martiny; Jennifer B H Martiny
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  14 in total

1.  Global biogeography of microbial nitrogen-cycling traits in soil.

Authors:  Michaeline B Nelson; Adam C Martiny; Jennifer B H Martiny
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

2.  Comparative Metagenomics Reveals Enhanced Nutrient Cycling Potential after 2 Years of Biochar Amendment in a Tropical Oxisol.

Authors:  Julian Yu; Lauren M Deem; Susan E Crow; Jonathan Deenik; C Ryan Penton
Journal:  Appl Environ Microbiol       Date:  2019-05-16       Impact factor: 4.792

3.  The Microbial Nitrogen Cycling, Bacterial Community Composition, and Functional Potential in a Natural Grassland Are Stable from Breaking Dormancy to Being Dormant Again.

Authors:  Bikram K Das; Satoshi Ishii; Linto Antony; Alexander J Smart; Joy Scaria; Volker S Brözel
Journal:  Microorganisms       Date:  2022-04-28

4.  Spatial Patterns and Composition Traits of Soil Microbial Nitrogen-Metabolism Genes in the Robinia pseudoacacia Forests at a Regional Scale.

Authors:  Yongli Ku; Yuting Lei; Xiaoting Han; Jieying Peng; Ying Zhu; Zhong Zhao
Journal:  Front Microbiol       Date:  2022-06-24       Impact factor: 6.064

5.  Ralstonia solanacearum Infection Disturbed the Microbiome Structure Throughout the Whole Tobacco Crop Niche as Well as the Nitrogen Metabolism in Soil.

Authors:  Zhaobao Wang; Yuzhen Zhang; Guodong Bo; Yanping Zhang; Yu Chen; Minchong Shen; Peng Zhang; Guitong Li; Jie Zhou; Zhengfeng Li; Jianming Yang
Journal:  Front Bioeng Biotechnol       Date:  2022-06-21

Review 6.  High-resolution characterization of the human microbiome.

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7.  Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China.

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8.  Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome.

Authors:  William C Nelson; Emily B Graham; Alex R Crump; Sarah J Fansler; Evan V Arntzen; David W Kennedy; James C Stegen
Journal:  PLoS One       Date:  2020-01-27       Impact factor: 3.240

9.  Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams.

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Journal:  Sci Rep       Date:  2017-10-04       Impact factor: 4.379

10.  Microbial community structure and functional properties in permanently and seasonally flooded areas in Poyang Lake.

Authors:  Yang Liu; Ze Ren; Xiaodong Qu; Min Zhang; Yang Yu; Yuhang Zhang; Wenqi Peng
Journal:  Sci Rep       Date:  2020-03-16       Impact factor: 4.379

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