Literature DB >> 26221706

Tractography-Driven Groupwise Multi-scale Parcellation of the Cortex.

Sarah Parisot, Salim Arslan, Jonathan Passerat-Palmbach, William M Wells, Daniel Rueckert.   

Abstract

The analysis of the connectome of the human brain provides key insight into the brain's organisation and function, and its evolution in disease or ageing. Parcellation of the cortical surface into distinct regions in terms of structural connectivity is an essential step that can enable such analysis. The estimation of a stable connectome across a population of healthy subjects requires the estimation of a groupwise parcellation that can capture the variability of the connectome across the population. This problem has solely been addressed in the literature via averaging of connectivity profiles or finding correspondences between individual parcellations a posteriori. In this paper, we propose a groupwise parcellation method of the cortex based on diffusion MR images (dMRI). We borrow ideas from the area of cosegmentation in computer vision and directly estimate a consistent parcellation across different subjects and scales through a spectral clustering approach. The parcellation is driven by the tractography connectivity profiles, and information between subjects and across scales. Promising qualitative and quantitative results on a sizeable data-set demonstrate the strong potential of the method.

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Year:  2015        PMID: 26221706      PMCID: PMC4667730          DOI: 10.1007/978-3-319-19992-4_47

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  16 in total

1.  Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

Authors:  N Tzourio-Mazoyer; B Landeau; D Papathanassiou; F Crivello; O Etard; N Delcroix; B Mazoyer; M Joliot
Journal:  Neuroimage       Date:  2002-01       Impact factor: 6.556

2.  Segmentation given partial grouping constraints.

Authors:  Stella X Yu; Jianbo Shi
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-02       Impact factor: 6.226

3.  Tractography-based parcellation of the cortex using a spatially-informed dimension reduction of the connectivity matrix.

Authors:  Pauline Roca; Denis Rivière; Pamela Guevara; Cyril Poupon; Jean-François Mangin
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  Inter-subject connectivity-based parcellation of a patch of cerebral cortex.

Authors:  Pauline Roca; Alan Tucholka; Denis Rivière; Pamela Guevara; Cyril Poupon; Jean-François Mangin
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

5.  Connectivity-Based Parcellation of Broca's Area.

Authors:  A Anwander; M Tittgemeyer; D Y von Cramon; A D Friederici; T R Knösche
Journal:  Cereb Cortex       Date:  2006-05-17       Impact factor: 5.357

Review 6.  The human connectome: a complex network.

Authors:  Olaf Sporns
Journal:  Ann N Y Acad Sci       Date:  2011-01-04       Impact factor: 5.691

7.  Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature.

Authors:  Christophe Destrieux; Bruce Fischl; Anders Dale; Eric Halgren
Journal:  Neuroimage       Date:  2010-06-12       Impact factor: 6.556

8.  Multiple-subjects connectivity-based parcellation using hierarchical Dirichlet process mixture models.

Authors:  S Jbabdi; M W Woolrich; T E J Behrens
Journal:  Neuroimage       Date:  2008-09-19       Impact factor: 6.556

9.  A framework for using diffusion weighted imaging to improve cortical parcellation.

Authors:  Matthew J Clarkson; Ian B Malone; Marc Modat; Kelvin K Leung; Natalie Ryan; Daniel C Alexander; Nick C Fox; Sébastien Ourselin
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

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  6 in total

1.  sGraSP: A graph-based method for the derivation of subject-specific functional parcellations of the brain.

Authors:  N Honnorat; T D Satterthwaite; R E Gur; R C Gur; C Davatzikos
Journal:  J Neurosci Methods       Date:  2016-11-29       Impact factor: 2.390

2.  Group-wise parcellation of the cortex through multi-scale spectral clustering.

Authors:  Sarah Parisot; Salim Arslan; Jonathan Passerat-Palmbach; William M Wells; Daniel Rueckert
Journal:  Neuroimage       Date:  2016-05-15       Impact factor: 6.556

3.  Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System.

Authors:  Jonathan Passerat-Palmbach; Romain Reuillon; Mathieu Leclaire; Antonios Makropoulos; Emma C Robinson; Sarah Parisot; Daniel Rueckert
Journal:  Front Neuroinform       Date:  2017-03-22       Impact factor: 4.081

4.  Learning Cortical Parcellations Using Graph Neural Networks.

Authors:  Kristian M Eschenburg; Thomas J Grabowski; David R Haynor
Journal:  Front Neurosci       Date:  2021-12-24       Impact factor: 4.677

5.  Optimizing Connectivity-Driven Brain Parcellation Using Ensemble Clustering.

Authors:  Anvar Kurmukov; Ayagoz Mussabaeva; Yulia Denisova; Daniel Moyer; Neda Jahanshad; Paul M Thompson; Boris A Gutman
Journal:  Brain Connect       Date:  2020-05

Review 6.  Concurrent white matter bundles and grey matter networks using independent component analysis.

Authors:  Jonathan O'Muircheartaigh; Saad Jbabdi
Journal:  Neuroimage       Date:  2017-05-14       Impact factor: 6.556

  6 in total

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