Literature DB >> 20547229

Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature.

Christophe Destrieux1, Bruce Fischl, Anders Dale, Eric Halgren.   

Abstract

Precise localization of sulco-gyral structures of the human cerebral cortex is important for the interpretation of morpho-functional data, but requires anatomical expertise and is time consuming because of the brain's geometric complexity. Software developed to automatically identify sulco-gyral structures has improved substantially as a result of techniques providing topologically correct reconstructions permitting inflated views of the human brain. Here we describe a complete parcellation of the cortical surface using standard internationally accepted nomenclature and criteria. This parcellation is available in the FreeSurfer package. First, a computer-assisted hand parcellation classified each vertex as sulcal or gyral, and these were then subparcellated into 74 labels per hemisphere. Twelve datasets were used to develop rules and algorithms (reported here) that produced labels consistent with anatomical rules as well as automated computational parcellation. The final parcellation was used to build an atlas for automatically labeling the whole cerebral cortex. This atlas was used to label an additional 12 datasets, which were found to have good concordance with manual labels. This paper presents a precisely defined method for automatically labeling the cortical surface in standard terminology. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20547229      PMCID: PMC2937159          DOI: 10.1016/j.neuroimage.2010.06.010

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  27 in total

1.  Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain.

Authors:  P M Thompson; R P Woods; M S Mega; A W Toga
Journal:  Hum Brain Mapp       Date:  2000-02       Impact factor: 5.038

2.  Automated sulcal segmentation using watersheds on the cortical surface.

Authors:  Maryam E Rettmann; Xiao Han; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2002-02       Impact factor: 6.556

3.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

4.  Terminologia anatomica: new terminology for the new anatomist.

Authors:  I Whitmore
Journal:  Anat Rec       Date:  1999-04-15

5.  A hybrid approach to the skull stripping problem in MRI.

Authors:  F Ségonne; A M Dale; E Busa; M Glessner; D Salat; H K Hahn; B Fischl
Journal:  Neuroimage       Date:  2004-07       Impact factor: 6.556

6.  A Population-Average, Landmark- and Surface-based (PALS) atlas of human cerebral cortex.

Authors:  David C Van Essen
Journal:  Neuroimage       Date:  2005-09-19       Impact factor: 6.556

7.  Construction of a 3D probabilistic atlas of human cortical structures.

Authors:  David W Shattuck; Mubeena Mirza; Vitria Adisetiyo; Cornelius Hojatkashani; Georges Salamon; Katherine L Narr; Russell A Poldrack; Robert M Bilder; Arthur W Toga
Journal:  Neuroimage       Date:  2007-11-26       Impact factor: 6.556

8.  Geometrically accurate topology-correction of cortical surfaces using nonseparating loops.

Authors:  Florent Ségonne; Jenni Pacheco; Bruce Fischl
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

9.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

10.  Cytology and functionally correlated circuits of human posterior cingulate areas.

Authors:  Brent A Vogt; Leslie Vogt; Steven Laureys
Journal:  Neuroimage       Date:  2005-09-06       Impact factor: 6.556

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  844 in total

1.  Anterior insula volume and guilt: neurobehavioral markers of recurrence after early childhood major depressive disorder.

Authors:  Andy C Belden; Deanna M Barch; Timothy J Oakberg; Laura M April; Michael P Harms; Kelly N Botteron; Joan L Luby
Journal:  JAMA Psychiatry       Date:  2015-01       Impact factor: 21.596

2.  Default network correlations analyzed on native surfaces.

Authors:  Tyler M Seibert; James B Brewer
Journal:  J Neurosci Methods       Date:  2011-04-14       Impact factor: 2.390

3.  Combining atlas-based parcellation of regional brain data acquired across scanners at 1.5 T and 3.0 T field strengths.

Authors:  Adolf Pfefferbaum; Torsten Rohlfing; Margaret J Rosenbloom; Edith V Sullivan
Journal:  Neuroimage       Date:  2012-01-26       Impact factor: 6.556

4.  Dissociable morphometric differences of the inferior parietal lobule in schizophrenia.

Authors:  Lena Palaniyappan; Peter F Liddle
Journal:  Eur Arch Psychiatry Clin Neurosci       Date:  2012-03-28       Impact factor: 5.270

5.  Cortex Parcellation Associated Whole White Matter Parcellation in Individual Subjects.

Authors:  Patrick Schiffler; Jan-Gerd Tenberge; Heinz Wiendl; Sven G Meuth
Journal:  Front Hum Neurosci       Date:  2017-07-06       Impact factor: 3.169

6.  Near-Infrared Light Increases Functional Connectivity with a Non-thermal Mechanism.

Authors:  Grzegorz M Dmochowski; Ahmed Duke Shereen; Destiny Berisha; Jacek P Dmochowski
Journal:  Cereb Cortex Commun       Date:  2020-03-19

7.  Subject-level measurement of local cortical coupling.

Authors:  Simon N Vandekar; Russell T Shinohara; Armin Raznahan; Ryan D Hopson; David R Roalf; Kosha Ruparel; Ruben C Gur; Raquel E Gur; Theodore D Satterthwaite
Journal:  Neuroimage       Date:  2016-03-05       Impact factor: 6.556

8.  Machine Learning Analysis of the Relationships Between Gray Matter Volume and Childhood Trauma in a Transdiagnostic Community-Based Sample.

Authors:  Ashley N Clausen; Robin L Aupperle; Hung-Wen Yeh; Darcy Waller; Janelle Payne; Rayus Kuplicki; Elisabeth Akeman; Martin Paulus
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2019-03-13

9.  Auditory and tactile frequency representations are co-embedded in modality-defined cortical sensory systems.

Authors:  Md Shoaibur Rahman; Kelly Anne Barnes; Lexi E Crommett; Mark Tommerdahl; Jeffrey M Yau
Journal:  Neuroimage       Date:  2020-04-11       Impact factor: 6.556

10.  Brain structure mediates the association between socioeconomic status and attention-deficit/hyperactivity disorder.

Authors:  Laura Machlin; Katie A McLaughlin; Margaret A Sheridan
Journal:  Dev Sci       Date:  2019-05-27
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