Literature DB >> 26217168

A Journey Through a Leaf: Phenomics Analysis of Leaf Growth in Arabidopsis thaliana.

Hannes Vanhaeren1, Nathalie Gonzalez1, Dirk Inzé1.   

Abstract

In Arabidopsis, leaves contribute to the largest part of the aboveground biomass. In these organs, light is captured and converted into chemical energy, which plants use to grow and complete their life cycle. Leaves emerge as a small pool of cells at the vegetative shoot apical meristem and develop into planar, complex organs through different interconnected cellular events. Over the last decade, numerous phenotyping techniques have been developed to visualize and quantify leaf size and growth, leading to the identification of numerous genes that contribute to the final size of leaves. In this review, we will start at the Arabidopsis rosette level and gradually zoom in from a macroscopic view on leaf growth to a microscopic and molecular view. Along this journey, we describe different techniques that have been key to identify important events during leaf development and discuss approaches that will further help unraveling the complex cellular and molecular mechanisms that underlie leaf growth.

Entities:  

Year:  2015        PMID: 26217168      PMCID: PMC4513694          DOI: 10.1199/tab.0181

Source DB:  PubMed          Journal:  Arabidopsis Book        ISSN: 1543-8120


  149 in total

1.  Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis.

Authors:  L De Veylder; T Beeckman; G T Beemster; L Krols; F Terras; I Landrieu; E van der Schueren; S Maes; M Naudts; D Inzé
Journal:  Plant Cell       Date:  2001-07       Impact factor: 11.277

2.  Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

Authors:  D C Boyes; A M Zayed; R Ascenzi; A J McCaskill; N E Hoffman; K R Davis; J Görlach
Journal:  Plant Cell       Date:  2001-07       Impact factor: 11.277

3.  Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves.

Authors:  Gorou Horiguchi; Ushio Fujikura; Ali Ferjani; Naoko Ishikawa; Hirokazu Tsukaya
Journal:  Plant J       Date:  2006-11       Impact factor: 6.417

4.  Laser-assisted microdissection applied to floral tissues.

Authors:  Samuel E Wuest; Ueli Grossniklaus
Journal:  Methods Mol Biol       Date:  2014

5.  Stomatal development in Arabidopsis.

Authors:  Lynn Jo Pillitteri; Juan Dong
Journal:  Arabidopsis Book       Date:  2013-06-06

Review 6.  The leaf index: heteroblasty, natural variation, and the genetic control of polar processes of leaf expansion.

Authors:  Hirokazu Tsukaya
Journal:  Plant Cell Physiol       Date:  2002-04       Impact factor: 4.927

7.  The 1001 genomes project for Arabidopsis thaliana.

Authors:  Detlef Weigel; Richard Mott
Journal:  Genome Biol       Date:  2009-05-27       Impact factor: 13.583

8.  Impact of segmental chromosomal duplications on leaf size in the grandifolia-D mutants of Arabidopsis thaliana.

Authors:  Gorou Horiguchi; Nathalie Gonzalez; Gerrit T S Beemster; Dirk Inzé; Hirokazu Tsukaya
Journal:  Plant J       Date:  2009-06-05       Impact factor: 6.417

9.  The E3 ubiquitin ligase BIG BROTHER controls arabidopsis organ size in a dosage-dependent manner.

Authors:  Sabine Disch; Elena Anastasiou; Vijay K Sharma; Thomas Laux; Jennifer C Fletcher; Michael Lenhard
Journal:  Curr Biol       Date:  2006-02-07       Impact factor: 10.834

10.  Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Authors:  Xiangchao Gan; Oliver Stegle; Jonas Behr; Joshua G Steffen; Philipp Drewe; Katie L Hildebrand; Rune Lyngsoe; Sebastian J Schultheiss; Edward J Osborne; Vipin T Sreedharan; André Kahles; Regina Bohnert; Géraldine Jean; Paul Derwent; Paul Kersey; Eric J Belfield; Nicholas P Harberd; Eric Kemen; Christopher Toomajian; Paula X Kover; Richard M Clark; Gunnar Rätsch; Richard Mott
Journal:  Nature       Date:  2011-08-28       Impact factor: 49.962

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  16 in total

1.  PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics.

Authors:  Birgit Möller; Yvonne Poeschl; Romina Plötner; Katharina Bürstenbinder
Journal:  Plant Physiol       Date:  2017-09-20       Impact factor: 8.340

2.  Chloroplast differentiation in the growing leaves of Arabidopsis thaliana.

Authors:  Irene L Gügel; Jürgen Soll
Journal:  Protoplasma       Date:  2016-12-09       Impact factor: 3.356

3.  Envelope K+/H+ Antiporters AtKEA1 and AtKEA2 Function in Plastid Development.

Authors:  María Nieves Aranda-Sicilia; Ali Aboukila; Ute Armbruster; Olivier Cagnac; Tobias Schumann; Hans-Henning Kunz; Peter Jahns; María Pilar Rodríguez-Rosales; Heven Sze; Kees Venema
Journal:  Plant Physiol       Date:  2016-07-21       Impact factor: 8.340

4.  Leaf and Plant Age Affects Photosynthetic Performance and Photoprotective Capacity.

Authors:  Ludwik W Bielczynski; Mateusz K Łącki; Iris Hoefnagels; Anna Gambin; Roberta Croce
Journal:  Plant Physiol       Date:  2017-10-10       Impact factor: 8.340

5.  Cotyledons contribute to plant growth and hybrid vigor in Arabidopsis.

Authors:  Li Wang; Pei-Chuan Liu; Li Min Wu; Jiafu Tan; W James Peacock; Elizabeth S Dennis
Journal:  Planta       Date:  2018-12-14       Impact factor: 4.116

6.  Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana.

Authors:  Kumud Saini; Marios N Markakis; Malgorzata Zdanio; Daria M Balcerowicz; Tom Beeckman; Lieven De Veylder; Els Prinsen; Gerrit T S Beemster; Kris Vissenberg
Journal:  Front Plant Sci       Date:  2017-06-14       Impact factor: 5.753

7.  PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.

Authors:  Dóra Faragó; László Sass; Ildikó Valkai; Norbert Andrási; László Szabados
Journal:  Front Plant Sci       Date:  2018-02-22       Impact factor: 5.753

8.  Leaves of grass: focusing phenomics on maize leaf growth.

Authors:  Michael J Scanlon
Journal:  Genome Biol       Date:  2015-09-17       Impact factor: 13.583

9.  Deep phenotyping: deep learning for temporal phenotype/genotype classification.

Authors:  Sarah Taghavi Namin; Mohammad Esmaeilzadeh; Mohammad Najafi; Tim B Brown; Justin O Borevitz
Journal:  Plant Methods       Date:  2018-08-04       Impact factor: 4.993

10.  High-throughput phenotyping platform for analyzing drought tolerance in rice.

Authors:  Song Lim Kim; Nyunhee Kim; Hongseok Lee; Eungyeong Lee; Kyeong-Seong Cheon; Minsu Kim; JeongHo Baek; Inchan Choi; Hyeonso Ji; In Sun Yoon; Ki-Hong Jung; Taek-Ryoun Kwon; Kyung-Hwan Kim
Journal:  Planta       Date:  2020-08-10       Impact factor: 4.116

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