Literature DB >> 26216960

Molecular structure of monomorphic peptide fibrils within a kinetically trapped hydrogel network.

Katelyn Nagy-Smith1, Eric Moore2, Joel Schneider3, Robert Tycko4.   

Abstract

Most, if not all, peptide- and protein-based hydrogels formed by self-assembly can be characterized as kinetically trapped 3D networks of fibrils. The propensity of disease-associated amyloid-forming peptides and proteins to assemble into polymorphic fibrils suggests that cross-β fibrils comprising hydrogels may also be polymorphic. We use solid-state NMR to determine the molecular and supramolecular structure of MAX1, a de novo designed gel-forming peptide, in its fibrillar state. We find that MAX1 adopts a β-hairpin conformation and self-assembles with high fidelity into a double-layered cross-β structure. Hairpins assemble with an in-register Syn orientation within each β-sheet layer and with an Anti orientation between layers. Surprisingly, although the MAX1 fibril network is kinetically trapped, solid-state NMR data show that fibrils within this network are monomorphic and most likely represent the thermodynamic ground state. Intermolecular interactions not available in alternative structural arrangements apparently dictate this monomorphic behavior.

Entities:  

Keywords:  amyloid; cross-β structure; peptide design; polymorphism; β-hairpin

Mesh:

Substances:

Year:  2015        PMID: 26216960      PMCID: PMC4538636          DOI: 10.1073/pnas.1509313112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Controlling hydrogelation kinetics by peptide design for three-dimensional encapsulation and injectable delivery of cells.

Authors:  Lisa Haines-Butterick; Karthikan Rajagopal; Monica Branco; Daphne Salick; Ronak Rughani; Matthew Pilarz; Matthew S Lamm; Darrin J Pochan; Joel P Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

2.  Solid-state NMR evidence for β-hairpin structure within MAX8 designer peptide nanofibers.

Authors:  Sarah R Leonard; Ashley R Cormier; Xiaodong Pang; Maxwell I Zimmerman; Huan-Xiang Zhou; Anant K Paravastu
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

3.  Tuning the pH responsiveness of beta-hairpin peptide folding, self-assembly, and hydrogel material formation.

Authors:  Karthikan Rajagopal; Matthew S Lamm; Lisa A Haines-Butterick; Darrin J Pochan; Joel P Schneider
Journal:  Biomacromolecules       Date:  2009-09-14       Impact factor: 6.988

4.  A new structural model of Aβ40 fibrils.

Authors:  Ivano Bertini; Leonardo Gonnelli; Claudio Luchinat; Jiafei Mao; Antonella Nesi
Journal:  J Am Chem Soc       Date:  2011-09-21       Impact factor: 15.419

Review 5.  Protein engineering to stabilize soluble amyloid β-protein aggregates for structural and functional studies.

Authors:  Torleif Härd
Journal:  FEBS J       Date:  2011-09-06       Impact factor: 5.542

6.  Injectable solid hydrogel: mechanism of shear-thinning and immediate recovery of injectable β-hairpin peptide hydrogels.

Authors:  Congqi Yan; Aysegul Altunbas; Tuna Yucel; Radhika P Nagarkar; Joel P Schneider; Darrin J Pochan
Journal:  Soft Matter       Date:  2010-10-21       Impact factor: 3.679

Review 7.  Curli biogenesis and function.

Authors:  Michelle M Barnhart; Matthew R Chapman
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

8.  Studies on the in vitro assembly of a beta 1-40: implications for the search for a beta fibril formation inhibitors.

Authors:  C S Goldsbury; S Wirtz; S A Müller; S Sunderji; P Wicki; U Aebi; P Frey
Journal:  J Struct Biol       Date:  2000-06       Impact factor: 2.867

9.  Molecular structure of β-amyloid fibrils in Alzheimer's disease brain tissue.

Authors:  Jun-Xia Lu; Wei Qiang; Wai-Ming Yau; Charles D Schwieters; Stephen C Meredith; Robert Tycko
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

10.  Atomic-resolution three-dimensional structure of amyloid β fibrils bearing the Osaka mutation.

Authors:  Anne K Schütz; Toni Vagt; Matthias Huber; Oxana Y Ovchinnikova; Riccardo Cadalbert; Joseph Wall; Peter Güntert; Anja Böckmann; Rudi Glockshuber; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-13       Impact factor: 15.336

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  42 in total

1.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

2.  Post-Translational Backbone Engineering through Selenomethionine-Mediated Incorporation of Freidinger Lactams.

Authors:  Dillon T Flood; Nicholas L Yan; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-11       Impact factor: 15.336

3.  Ambidextrous helical nanotubes from self-assembly of designed helical hairpin motifs.

Authors:  Spencer A Hughes; Fengbin Wang; Shengyuan Wang; Mark A B Kreutzberger; Tomasz Osinski; Albina Orlova; Joseph S Wall; Xiaobing Zuo; Edward H Egelman; Vincent P Conticello
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

4.  Beta-hairpin hydrogels as scaffolds for high-throughput drug discovery in three-dimensional cell culture.

Authors:  Peter Worthington; Katherine M Drake; Zhiqin Li; Andrew D Napper; Darrin J Pochan; Sigrid A Langhans
Journal:  Anal Biochem       Date:  2017-07-27       Impact factor: 3.365

5.  Design of a Peptide-Based Electronegative Hydrogel for the Direct Encapsulation, 3D Culturing, in Vivo Syringe-Based Delivery, and Long-Term Tissue Engraftment of Cells.

Authors:  Y Yamada; N L Patel; J D Kalen; J P Schneider
Journal:  ACS Appl Mater Interfaces       Date:  2019-09-13       Impact factor: 9.229

Review 6.  Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Solid State Nucl Magn Reson       Date:  2017-10-04       Impact factor: 2.293

7.  Dynamic protein folding at the surface of stimuli-responsive peptide fibrils.

Authors:  Radhika P Nagarkar; Stephen E Miller; Sheng Zhong; Darrin J Pochan; Joel P Schneider
Journal:  Protein Sci       Date:  2018-03-14       Impact factor: 6.725

8.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

Review 9.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

10.  Enzymatic Self-Assembly Confers Exceptionally Strong Synergism with NF-κB Targeting for Selective Necroptosis of Cancer Cells.

Authors:  Jie Zhou; Xuewen Du; Xiaoyi Chen; Jiaqing Wang; Ning Zhou; Difei Wu; Bing Xu
Journal:  J Am Chem Soc       Date:  2018-02-06       Impact factor: 15.419

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