Literature DB >> 26212453

An Interactive Database for the Assessment of Histone Antibody Specificity.

Scott B Rothbart1, Bradley M Dickson2, Jesse R Raab3, Adrian T Grzybowski4, Krzysztof Krajewski5, Angela H Guo5, Erin K Shanle5, Steven Z Josefowicz6, Stephen M Fuchs7, C David Allis6, Terry R Magnuson3, Alexander J Ruthenburg8, Brian D Strahl9.   

Abstract

Access to high-quality antibodies is a necessity for the study of histones and their posttranslational modifications (PTMs). Here we debut the Histone Antibody Specificity Database (http://www.histoneantibodies.com), an online and expanding resource cataloging the behavior of widely used, commercially available histone antibodies by peptide microarray. This interactive web portal provides a critical resource to the biological research community that routinely uses these antibodies as detection reagents for a wide range of applications.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26212453      PMCID: PMC4530063          DOI: 10.1016/j.molcel.2015.06.022

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  48 in total

Review 1.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  Operating on chromatin, a colorful language where context matters.

Authors:  Kathryn E Gardner; C David Allis; Brian D Strahl
Journal:  J Mol Biol       Date:  2011-01-25       Impact factor: 5.469

3.  Antibody recognition of histone post-translational modifications: emerging issues and future prospects.

Authors:  Stephen M Fuchs; Brian D Strahl
Journal:  Epigenomics       Date:  2011-06       Impact factor: 4.778

4.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

5.  Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography.

Authors:  Marjorie Brand; Shravanti Rampalli; Chandra-Prakash Chaturvedi; F Jeffrey Dilworth
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

6.  Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini.

Authors:  Sean D Taverna; Beatrix M Ueberheide; Yifan Liu; Alan J Tackett; Robert L Diaz; Jeffrey Shabanowitz; Brian T Chait; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

7.  Organismal differences in post-translational modifications in histones H3 and H4.

Authors:  Benjamin A Garcia; Sandra B Hake; Robert L Diaz; Monika Kauer; Stephanie A Morris; Judith Recht; Jeffrey Shabanowitz; Nilamadhab Mishra; Brian D Strahl; C David Allis; Donald F Hunt
Journal:  J Biol Chem       Date:  2006-12-28       Impact factor: 5.157

8.  Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3.

Authors:  M Tachibana; K Sugimoto; T Fukushima; Y Shinkai
Journal:  J Biol Chem       Date:  2001-04-20       Impact factor: 5.157

Review 9.  MSK1 and MSK2 mediate mitogen- and stress-induced phosphorylation of histone H3: a controversy resolved.

Authors:  James R Davie
Journal:  Sci STKE       Date:  2003-08-12

10.  Gene silencing: trans-histone regulatory pathway in chromatin.

Authors:  Scott D Briggs; Tiaojiang Xiao; Zu-Wen Sun; Jennifer A Caldwell; Jeffrey Shabanowitz; Donald F Hunt; C David Allis; Brian D Strahl
Journal:  Nature       Date:  2002-07-14       Impact factor: 49.962

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  59 in total

Review 1.  The upstreams and downstreams of H3K79 methylation by DOT1L.

Authors:  Hanneke Vlaming; Fred van Leeuwen
Journal:  Chromosoma       Date:  2016-01-04       Impact factor: 4.316

2.  Analysis of Histone Antibody Specificity with Peptide Microarrays.

Authors:  Evan M Cornett; Bradley M Dickson; Scott B Rothbart
Journal:  J Vis Exp       Date:  2017-08-01       Impact factor: 1.355

3.  Bivalent Regions of Cytosine Methylation and H3K27 Acetylation Suggest an Active Role for DNA Methylation at Enhancers.

Authors:  Jessica Charlet; Christopher E Duymich; Fides D Lay; Kamilla Mundbjerg; Karina Dalsgaard Sørensen; Gangning Liang; Peter A Jones
Journal:  Mol Cell       Date:  2016-05-05       Impact factor: 17.970

4.  Clipping of arginine-methylated histone tails by JMJD5 and JMJD7.

Authors:  Haolin Liu; Chao Wang; Schuyler Lee; Yu Deng; Matthew Wither; Sangphil Oh; Fangkun Ning; Carissa Dege; Qianqian Zhang; Xinjian Liu; Aaron M Johnson; Jianye Zang; Zhongzhou Chen; Ralf Janknecht; Kirk Hansen; Philippa Marrack; Chuan-Yuan Li; John W Kappler; James Hagman; Gongyi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

5.  Chromatin Immunoprecipitation (ChIP) of Histone Modifications from Saccharomyces cerevisiae.

Authors:  Meagan Jezek; Alison Jacques; Deepika Jaiswal; Erin M Green
Journal:  J Vis Exp       Date:  2017-12-29       Impact factor: 1.355

Review 6.  Integrating Proteomics and Targeted Metabolomics to Understand Global Changes in Histone Modifications.

Authors:  Johayra Simithy; Simone Sidoli; Benjamin A Garcia
Journal:  Proteomics       Date:  2018-04-20       Impact factor: 3.984

7.  Engineered Reader Proteins for Enhanced Detection of Methylated Lysine on Histones.

Authors:  Katherine I Albanese; Mackenzie W Krone; Christopher J Petell; Madison M Parker; Brian D Strahl; Eric M Brustad; Marcey L Waters
Journal:  ACS Chem Biol       Date:  2019-11-01       Impact factor: 5.100

8.  Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks.

Authors:  Li Cheng; Cheng-Xi Liu; Shuangying Jiang; Sha Hou; Jin-Guo Huang; Zi-Qing Chen; Yang-Yang Sun; Huan Qi; He-Wei Jiang; Jing-Fang Wang; Yi-Ming Zhou; Daniel M Czajkowsky; Junbiao Dai; Sheng-Ce Tao
Journal:  Mol Cell Proteomics       Date:  2018-06-05       Impact factor: 5.911

9.  Chromatin Immunoprecipitation (ChIP) in Mouse T-cell Lines.

Authors:  Benedetto Daniele Giaimo; Francesca Ferrante; Tilman Borggrefe
Journal:  J Vis Exp       Date:  2017-06-17       Impact factor: 1.355

10.  Chromatin Kinases Act on Transcription Factors and Histone Tails in Regulation of Inducible Transcription.

Authors:  Steven Z Josefowicz; Miho Shimada; Anja Armache; Charles H Li; Rand M Miller; Shu Lin; Aerin Yang; Brian D Dill; Henrik Molina; Hee-Sung Park; Benjamin A Garcia; Jack Taunton; Robert G Roeder; C David Allis
Journal:  Mol Cell       Date:  2016-10-20       Impact factor: 17.970

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