Literature DB >> 26205990

Targeted Gene Disruption by Ectopic Induction of DNA Elimination in Tetrahymena.

Azusa Hayashi1, Kazufumi Mochizuki2.   

Abstract

Tetrahymena is a useful eukaryotic model for biochemistry and molecular cell biology studies. We previously demonstrated that targeted ectopic DNA elimination, also called co-Deletion (coDel), can be induced by the introduction of an internal eliminated sequence (IES)-target DNA chimeric construct. In this study, we demonstrate that coDel occurs at most of the loci tested and can be used for the production of somatic gene KO strains. We also showed that coDel at two loci can be simultaneously induced by a single transformation; thus, coDel can be used to disrupt multiple gene loci in a single cell. Therefore, coDel is a useful tool for functional genetics in Tetrahymena and further extends the usefulness of this model organism.
Copyright © 2015 by the Genetics Society of America.

Keywords:  DNA elimination; RNAi; Tetrahymena; gene knockout

Mesh:

Substances:

Year:  2015        PMID: 26205990      PMCID: PMC4566276          DOI: 10.1534/genetics.115.178525

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  25 in total

Review 1.  Tetrahymena as a laboratory organism: useful strains, cell culture, and cell line maintenance.

Authors:  E Orias; E P Hamilton; J D Orias
Journal:  Methods Cell Biol       Date:  2000       Impact factor: 1.441

2.  Tetrahymena thermophila.

Authors:  Kathleen Collins; Martin A Gorovsky
Journal:  Curr Biol       Date:  2005-05-10       Impact factor: 10.834

3.  Induction of gene silencing by hairpin RNA expression in Tetrahymena thermophila reveals a second small RNA pathway.

Authors:  Rachel A Howard-Till; Meng-Chao Yao
Journal:  Mol Cell Biol       Date:  2006-09-25       Impact factor: 4.272

4.  Germline and somatic transformation of mating Tetrahymena thermophila by particle bombardment.

Authors:  D Cassidy-Hanley; J Bowen; J H Lee; E Cole; L A VerPlank; J Gaertig; M A Gorovsky; P J Bruns
Journal:  Genetics       Date:  1997-05       Impact factor: 4.562

5.  Phenotypic assortment in Tetrahymena thermophila: assortment kinetics of antibiotic-resistance markers, tsA, death, and the highly amplified rDNA locus.

Authors:  E V Merriam; P J Bruns
Journal:  Genetics       Date:  1988-10       Impact factor: 4.562

6.  The Tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus.

Authors:  Tomoko Noto; Henriette M Kurth; Kensuke Kataoka; Lucia Aronica; Leroi V DeSouza; K W Michael Siu; Ronald E Pearlman; Martin A Gorovsky; Kazufumi Mochizuki
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

7.  RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.

Authors:  Yifan Liu; Sean D Taverna; Tara L Muratore; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Genes Dev       Date:  2007-06-15       Impact factor: 11.361

8.  A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila.

Authors:  Chao-Yin Cheng; Alexander Vogt; Kazufumi Mochizuki; Meng-Chao Yao
Journal:  Mol Biol Cell       Date:  2010-03-31       Impact factor: 4.138

9.  Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila.

Authors:  Mary T Couvillion; Suzanne R Lee; Brandon Hogstad; Colin D Malone; Leath A Tonkin; Ravi Sachidanandam; Gregory J Hannon; Kathleen Collins
Journal:  Genes Dev       Date:  2009-08-05       Impact factor: 11.361

10.  Identifying functional regions of rRNA by insertion mutagenesis and complete gene replacement in Tetrahymena thermophila.

Authors:  R Sweeney; M C Yao
Journal:  EMBO J       Date:  1989-03       Impact factor: 11.598

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  15 in total

Review 1.  Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools.

Authors:  Marisa D Ruehle; Eduardo Orias; Chad G Pearson
Journal:  Genetics       Date:  2016-06       Impact factor: 4.562

2.  Zfp1, a Cys2His2 zinc finger protein is required for meiosis initiation in Tetrahymena thermophila.

Authors:  Jing Zhang; Miao Tian; Kai Chen; Guanxiong Yan; Jie Xiong; Wei Miao
Journal:  Cell Cycle       Date:  2022-03-16       Impact factor: 5.173

3.  Composition and function of the C1b/C1f region in the ciliary central apparatus.

Authors:  Ewa Joachimiak; Anna Osinka; Hanan Farahat; Bianka Świderska; Ewa Sitkiewicz; Martyna Poprzeczko; Hanna Fabczak; Dorota Wloga
Journal:  Sci Rep       Date:  2021-06-03       Impact factor: 4.379

4.  Post-meiotic DNA double-strand breaks occur in Tetrahymena, and require Topoisomerase II and Spo11.

Authors:  Takahiko Akematsu; Yasuhiro Fukuda; Jyoti Garg; Jeffrey S Fillingham; Ronald E Pearlman; Josef Loidl
Journal:  Elife       Date:  2017-06-16       Impact factor: 8.140

5.  A Zip3-like protein plays a role in crossover formation in the SC-less meiosis of the protist Tetrahymena.

Authors:  Anura Shodhan; Kensuke Kataoka; Kazufumi Mochizuki; Maria Novatchkova; Josef Loidl
Journal:  Mol Biol Cell       Date:  2017-01-18       Impact factor: 4.138

6.  A streamlined cohesin apparatus is sufficient for mitosis and meiosis in the protist Tetrahymena.

Authors:  Emine I Ali; Josef Loidl; Rachel A Howard-Till
Journal:  Chromosoma       Date:  2018-06-12       Impact factor: 4.316

7.  Ciliary proteins Fap43 and Fap44 interact with each other and are essential for proper cilia and flagella beating.

Authors:  Paulina Urbanska; Ewa Joachimiak; Rafał Bazan; Gang Fu; Martyna Poprzeczko; Hanna Fabczak; Daniela Nicastro; Dorota Wloga
Journal:  Cell Mol Life Sci       Date:  2018-04-23       Impact factor: 9.261

8.  The key role of CYC2 during meiosis in Tetrahymena thermophila.

Authors:  Qianlan Xu; Ruoyu Wang; A R Ghanam; Guanxiong Yan; Wei Miao; Xiaoyuan Song
Journal:  Protein Cell       Date:  2016-03-23       Impact factor: 14.870

Review 9.  Whats, hows and whys of programmed DNA elimination in Tetrahymena.

Authors:  Tomoko Noto; Kazufumi Mochizuki
Journal:  Open Biol       Date:  2017-10       Impact factor: 6.411

10.  A chromatin-associated protein required for inducing and limiting meiotic DNA double-strand break formation.

Authors:  Miao Tian; Josef Loidl
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

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