Literature DB >> 26203822

Superresolution live imaging of plant cells using structured illumination microscopy.

George Komis1, Martin Mistrik2, Olga Šamajová1, Miroslav Ovečka1, Jiri Bartek3, Jozef Šamaj1.   

Abstract

Although superresolution (SR) approaches have been routinely used for fixed or living material from other organisms, the use of time-lapse structured illumination microscopy (SIM) imaging in plant cells still remains under-developed. Here we describe a validated method for time-lapse SIM that focuses on cortical microtubules of different plant cell types. By using one of the existing commercially available SIM platforms, we provide a user-friendly and easy-to-follow protocol that may be widely applied to the imaging of plant cells. This protocol includes steps describing calibration of the microscope and channel alignment, generation of an experimental point spread function (PSF), preparation of appropriate observation chambers with available plant material, image acquisition, reconstruction and validation. This protocol can be carried out within two to three working days.

Mesh:

Year:  2015        PMID: 26203822     DOI: 10.1038/nprot.2015.083

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  51 in total

1.  Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control.

Authors:  Richard W Cole; Tushare Jinadasa; Claire M Brown
Journal:  Nat Protoc       Date:  2011-11-10       Impact factor: 13.491

2.  Super-resolution 3D microscopy of live whole cells using structured illumination.

Authors:  Lin Shao; Peter Kner; E Hesper Rego; Mats G L Gustafsson
Journal:  Nat Methods       Date:  2011-10-16       Impact factor: 28.547

3.  Dynamics and organization of cortical microtubules as revealed by superresolution structured illumination microscopy.

Authors:  George Komis; Martin Mistrik; Olga Samajová; Anna Doskočilová; Miroslav Ovečka; Peter Illés; Jiri Bartek; Jozef Samaj
Journal:  Plant Physiol       Date:  2014-03-31       Impact factor: 8.340

4.  Super-resolution imaging for cell biologists: concepts, applications, current challenges and developments.

Authors:  Eugenio F Fornasiero; Felipe Opazo
Journal:  Bioessays       Date:  2015-01-12       Impact factor: 4.345

Review 5.  Imaging the invisible: resolving cellular microcompartments by superresolution microscopy techniques.

Authors:  Michael Hensel; Jürgen Klingauf; Jacob Piehler
Journal:  Biol Chem       Date:  2013-09       Impact factor: 3.915

6.  Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.

Authors:  O Griesbeck; G S Baird; R E Campbell; D A Zacharias; R Y Tsien
Journal:  J Biol Chem       Date:  2001-05-31       Impact factor: 5.157

7.  Correlative imaging of fluorescent proteins in resin-embedded plant material.

Authors:  Karen Bell; Steve Mitchell; Danae Paultre; Markus Posch; Karl Oparka
Journal:  Plant Physiol       Date:  2013-03-01       Impact factor: 8.340

8.  Subcellular and single-molecule imaging of plant fluorescent proteins using total internal reflection fluorescence microscopy (TIRFM).

Authors:  Gema Vizcay-Barrena; Stephen E D Webb; Marisa L Martin-Fernandez; Zoe A Wilson
Journal:  J Exp Bot       Date:  2011-08-23       Impact factor: 6.992

9.  Improved blue, green, and red fluorescent protein tagging vectors for S. cerevisiae.

Authors:  Sidae Lee; Wendell A Lim; Kurt S Thorn
Journal:  PLoS One       Date:  2013-07-02       Impact factor: 3.240

10.  A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum.

Authors:  Nathan C Shaner; Gerard G Lambert; Andrew Chammas; Yuhui Ni; Paula J Cranfill; Michelle A Baird; Brittney R Sell; John R Allen; Richard N Day; Maria Israelsson; Michael W Davidson; Jiwu Wang
Journal:  Nat Methods       Date:  2013-03-24       Impact factor: 28.547

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  27 in total

1.  Arabinogalactan protein-rare earth element complexes activate plant endocytosis.

Authors:  Lihong Wang; Mengzhu Cheng; Qing Yang; Jigang Li; Xiang Wang; Qing Zhou; Shingo Nagawa; Binxin Xia; Tongda Xu; Rongfeng Huang; Jingfang He; Changjiang Li; Ying Fu; Ying Liu; Jianchun Bao; Haiyan Wei; Hui Li; Li Tan; Zhenhong Gu; Ao Xia; Xiaohua Huang; Zhenbiao Yang; Xing Wang Deng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-25       Impact factor: 11.205

Review 2.  Quantitative 3D structured illumination microscopy of nuclear structures.

Authors:  Felix Kraus; Ezequiel Miron; Justin Demmerle; Tsotne Chitiashvili; Alexei Budco; Quentin Alle; Atsushi Matsuda; Heinrich Leonhardt; Lothar Schermelleh; Yolanda Markaki
Journal:  Nat Protoc       Date:  2017-04-13       Impact factor: 13.491

Review 3.  Strategic and practical guidelines for successful structured illumination microscopy.

Authors:  Justin Demmerle; Cassandravictoria Innocent; Alison J North; Graeme Ball; Marcel Müller; Ezequiel Miron; Atsushi Matsuda; Ian M Dobbie; Yolanda Markaki; Lothar Schermelleh
Journal:  Nat Protoc       Date:  2017-04-13       Impact factor: 13.491

4.  High density of REC8 constrains sister chromatid axes and prevents illegitimate synaptonemal complex formation.

Authors:  Ana Agostinho; Otto Manneberg; Robin van Schendel; Abrahan Hernández-Hernández; Anna Kouznetsova; Hans Blom; Hjalmar Brismar; Christer Höög
Journal:  EMBO Rep       Date:  2016-05-11       Impact factor: 8.807

Review 5.  Advances in Imaging Plant Cell Dynamics.

Authors:  George Komis; Dominik Novák; Miroslav Ovečka; Olga Šamajová; Jozef Šamaj
Journal:  Plant Physiol       Date:  2017-11-22       Impact factor: 8.340

6.  Correlation of vacuole morphology with stomatal lineage development by whole-cell electron tomography.

Authors:  Wenhan Cao; Zhenping Li; Shuxian Huang; Yuwei Shi; Ying Zhu; Man Nga Lai; Pui Lok Lok; Xiangfeng Wang; Yong Cui; Liwen Jiang
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

Review 7.  Fluorescent Nanoparticles for Super-Resolution Imaging.

Authors:  Wei Li; Gabriele S Kaminski Schierle; Bingfu Lei; Yingliang Liu; Clemens F Kaminski
Journal:  Chem Rev       Date:  2022-06-27       Impact factor: 72.087

Review 8.  Super-resolution microscopy demystified.

Authors:  Lothar Schermelleh; Alexia Ferrand; Thomas Huser; Christian Eggeling; Markus Sauer; Oliver Biehlmaier; Gregor P C Drummen
Journal:  Nat Cell Biol       Date:  2019-01-02       Impact factor: 28.824

Review 9.  From Microscopy to Nanoscopy: Defining an Arabidopsis thaliana Meiotic Atlas at the Nanometer Scale.

Authors:  Jason Sims; Peter Schlögelhofer; Marie-Therese Kurzbauer
Journal:  Front Plant Sci       Date:  2021-05-18       Impact factor: 5.753

10.  GR24, A Synthetic Strigolactone Analog, and Light Affect the Organization of Cortical Microtubules in Arabidopsis Hypocotyl Cells.

Authors:  Yuliya Krasylenko; George Komis; Sofiia Hlynska; Tereza Vavrdová; Miroslav Ovečka; Tomáš Pospíšil; Jozef Šamaj
Journal:  Front Plant Sci       Date:  2021-07-07       Impact factor: 5.753

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