Literature DB >> 26198393

Genome-wide association study identifies variants at 16p13 associated with survival in multiple myeloma patients.

Elad Ziv1, Eric Dean2, Donglei Hu1, Alessandro Martino3, Daniel Serie4, Karen Curtin5, Daniele Campa3, Blake Aftab6, Paige Bracci7, Gabriele Buda8, Yi Zhao5, Jennifer Caswell-Jin1, Robert Diasio9, Charles Dumontet10, Marek Dudziński11, Laura Fejerman1, Alexandra Greenberg12, Scott Huntsman1, Krzysztof Jamroziak13, Artur Jurczyszyn14, Shaji Kumar15, Djordje Atanackovic5, Martha Glenn5, Lisa A Cannon-Albright5, Brandt Jones5, Adam Lee9, Herlander Marques16, Thomas Martin6, Joaquin Martinez-Lopez17, Vincent Rajkumar15, Juan Sainz18, Annette Juul Vangsted19, Marzena Wątek20, Jeffrey Wolf6, Susan Slager21, Nicola J Camp5, Federico Canzian3, Celine Vachon22.   

Abstract

Here we perform the first genome-wide association study (GWAS) of multiple myeloma (MM) survival. In a meta-analysis of 306 MM patients treated at UCSF and 239 patients treated at the Mayo clinic, we find a significant association between SNPs near the gene FOPNL on chromosome 16p13 and survival (rs72773978; P=6 × 10(-10)). Patients with the minor allele are at increased risk for mortality (HR: 2.65; 95% CI: 1.94-3.58) relative to patients homozygous for the major allele. We replicate the association in the IMMEnSE cohort including 772 patients, and a University of Utah cohort including 318 patients (rs72773978 P=0.044). Using publicly available data, we find that the minor allele was associated with increased expression of FOPNL and increased expression of FOPNL was associated with higher expression of centrosomal genes and with shorter survival. Polymorphisms at the FOPNL locus are associated with survival among MM patients.

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Year:  2015        PMID: 26198393      PMCID: PMC4656791          DOI: 10.1038/ncomms8539

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  42 in total

1.  Genome-wide interrogation identifies YAP1 variants associated with survival of small-cell lung cancer patients.

Authors:  Chen Wu; Binghe Xu; Peng Yuan; Xiaoping Miao; Yu Liu; Yin Guan; Dianke Yu; Jian Xu; Tongwen Zhang; Hongbing Shen; Tangchun Wu; Dongxin Lin
Journal:  Cancer Res       Date:  2010-11-30       Impact factor: 12.701

2.  A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.

Authors:  Brian L Browning; Sharon R Browning
Journal:  Am J Hum Genet       Date:  2009-02-05       Impact factor: 11.025

Review 3.  Prognostic factors in multiple myeloma.

Authors:  S V Rajkumar; P R Greipp
Journal:  Hematol Oncol Clin North Am       Date:  1999-12       Impact factor: 3.722

4.  Gene expression profiling for molecular classification of multiple myeloma in newly diagnosed patients.

Authors:  Annemiek Broyl; Dirk Hose; Henk Lokhorst; Yvonne de Knegt; Justine Peeters; Anna Jauch; Uta Bertsch; Arjan Buijs; Marian Stevens-Kroef; H Berna Beverloo; Edo Vellenga; Sonja Zweegman; Marie-Josée Kersten; Bronno van der Holt; Laila el Jarari; George Mulligan; Hartmut Goldschmidt; Mark van Duin; Pieter Sonneveld
Journal:  Blood       Date:  2010-06-23       Impact factor: 22.113

5.  Control of ciliogenesis by FOR20, a novel centrosome and pericentriolar satellite protein.

Authors:  Fatima Sedjaï; Claire Acquaviva; Véronique Chevrier; Jean-Paul Chauvin; Emilie Coppin; Aicha Aouane; François Coulier; Aslihan Tolun; Michel Pierres; Daniel Birnbaum; Olivier Rosnet
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

6.  LocusZoom: regional visualization of genome-wide association scan results.

Authors:  Randall J Pruim; Ryan P Welch; Serena Sanna; Tanya M Teslovich; Peter S Chines; Terry P Gliedt; Michael Boehnke; Gonçalo R Abecasis; Cristen J Willer
Journal:  Bioinformatics       Date:  2010-07-15       Impact factor: 6.937

7.  Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies.

Authors:  Tsun-Po Yang; Claude Beazley; Stephen B Montgomery; Antigone S Dimas; Maria Gutierrez-Arcelus; Barbara E Stranger; Panos Deloukas; Emmanouil T Dermitzakis
Journal:  Bioinformatics       Date:  2010-08-10       Impact factor: 6.937

8.  High-risk myeloma: a gene expression based risk-stratification model for newly diagnosed multiple myeloma treated with high-dose therapy is predictive of outcome in relapsed disease treated with single-agent bortezomib or high-dose dexamethasone.

Authors:  Fenghuang Zhan; Bart Barlogie; George Mulligan; John D Shaughnessy; Barb Bryant
Journal:  Blood       Date:  2008-01-15       Impact factor: 22.113

9.  METAL: fast and efficient meta-analysis of genomewide association scans.

Authors:  Cristen J Willer; Yun Li; Gonçalo R Abecasis
Journal:  Bioinformatics       Date:  2010-07-08       Impact factor: 6.937

10.  A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.

Authors:  Bryan N Howie; Peter Donnelly; Jonathan Marchini
Journal:  PLoS Genet       Date:  2009-06-19       Impact factor: 5.917

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  17 in total

1.  Rare germline alterations in cancer-related genes associated with the risk of multiple primary tumor development.

Authors:  Rolando A R Villacis; Tatiane R Basso; Luisa M Canto; Maísa Pinheiro; Karina M Santiago; Juliana Giacomazzi; Cláudia A A de Paula; Dirce M Carraro; Patrícia Ashton-Prolla; Maria I Achatz; Silvia R Rogatto
Journal:  J Mol Med (Berl)       Date:  2017-01-16       Impact factor: 4.599

2.  A Meta-analysis of Multiple Myeloma Risk Regions in African and European Ancestry Populations Identifies Putatively Functional Loci.

Authors:  Kristin A Rand; Chi Song; Eric Dean; Daniel J Serie; Karen Curtin; Xin Sheng; Donglei Hu; Carol Ann Huff; Leon Bernal-Mizrachi; Michael H Tomasson; Sikander Ailawadhi; Seema Singhal; Karen Pawlish; Edward S Peters; Cathryn H Bock; Alex Stram; David J Van Den Berg; Christopher K Edlund; David V Conti; Todd Zimmerman; Amie E Hwang; Scott Huntsman; John Graff; Ajay Nooka; Yinfei Kong; Silvana L Pregja; Sonja I Berndt; William J Blot; John Carpten; Graham Casey; Lisa Chu; W Ryan Diver; Victoria L Stevens; Michael R Lieber; Phyllis J Goodman; Anselm J M Hennis; Ann W Hsing; Jayesh Mehta; Rick A Kittles; Suzanne Kolb; Eric A Klein; Cristina Leske; Adam B Murphy; Barbara Nemesure; Christine Neslund-Dudas; Sara S Strom; Ravi Vij; Benjamin A Rybicki; Janet L Stanford; Lisa B Signorello; John S Witte; Christine B Ambrosone; Parveen Bhatti; Esther M John; Leslie Bernstein; Wei Zheng; Andrew F Olshan; Jennifer J Hu; Regina G Ziegler; Sarah J Nyante; Elisa V Bandera; Brenda M Birmann; Sue A Ingles; Michael F Press; Djordje Atanackovic; Martha J Glenn; Lisa A Cannon-Albright; Brandt Jones; Guido Tricot; Thomas G Martin; Shaji K Kumar; Jeffrey L Wolf; Sandra L Deming Halverson; Nathaniel Rothman; Angela R Brooks-Wilson; S Vincent Rajkumar; Laurence N Kolonel; Stephen J Chanock; Susan L Slager; Richard K Severson; Nalini Janakiraman; Howard R Terebelo; Elizabeth E Brown; Anneclaire J De Roos; Ann F Mohrbacher; Graham A Colditz; Graham G Giles; John J Spinelli; Brian C Chiu; Nikhil C Munshi; Kenneth C Anderson; Joan Levy; Jeffrey A Zonder; Robert Z Orlowski; Sagar Lonial; Nicola J Camp; Celine M Vachon; Elad Ziv; Daniel O Stram; Dennis J Hazelett; Christopher A Haiman; Wendy Cozen
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2016-09-01       Impact factor: 4.254

Review 3.  Genomic complexity of multiple myeloma and its clinical implications.

Authors:  Salomon Manier; Karma Z Salem; Jihye Park; Dan A Landau; Gad Getz; Irene M Ghobrial
Journal:  Nat Rev Clin Oncol       Date:  2016-08-17       Impact factor: 66.675

4.  Multiple myeloma and family history of lymphohaematopoietic cancers: Results from the International Multiple Myeloma Consortium.

Authors:  Leah H Schinasi; Elizabeth E Brown; Nicola J Camp; Sophia S Wang; Jonathan N Hofmann; Brian C Chiu; Lucia Miligi; Laura E Beane Freeman; Silvia de Sanjose; Leslie Bernstein; Alain Monnereau; Jacqueline Clavel; Guido J Tricot; Djordje Atanackovic; Pierluigi Cocco; Laurent Orsi; James A Dosman; John R McLaughlin; Mark P Purdue; Wendy Cozen; John J Spinelli; Anneclaire J de Roos
Journal:  Br J Haematol       Date:  2016-06-22       Impact factor: 6.998

5.  FOXM1 is a therapeutic target for high-risk multiple myeloma.

Authors:  C Gu; Y Yang; R Sompallae; H Xu; V S Tompkins; C Holman; D Hose; H Goldschmidt; G Tricot; F Zhan; S Janz
Journal:  Leukemia       Date:  2015-12-09       Impact factor: 11.528

6.  An intronic variant in the CELF4 gene is associated with risk for colorectal cancer.

Authors:  Craig C Teerlink; Jeff Stevens; Rolando Hernandez; Julio C Facelli; Lisa A Cannon-Albright
Journal:  Cancer Epidemiol       Date:  2021-04-28       Impact factor: 2.890

7.  Expression quantitative trait loci of genes predicting outcome are associated with survival of multiple myeloma patients.

Authors:  Angelica Macauda; Chiara Piredda; Alyssa I Clay-Gilmour; Juan Sainz; Gabriele Buda; Miroslaw Markiewicz; Torben Barington; Elad Ziv; Michelle A T Hildebrandt; Alem A Belachew; Judit Varkonyi; Witold Prejzner; Agnieszka Druzd-Sitek; John Spinelli; Niels Frost Andersen; Jonathan N Hofmann; Marek Dudziński; Joaquin Martinez-Lopez; Elzbieta Iskierka-Jazdzewska; Roger L Milne; Grzegorz Mazur; Graham G Giles; Lene Hyldahl Ebbesen; Marcin Rymko; Krzysztof Jamroziak; Edyta Subocz; Rui Manuel Reis; Ramon Garcia-Sanz; Anna Suska; Eva Kannik Haastrup; Daria Zawirska; Norbert Grzasko; Annette Juul Vangsted; Charles Dumontet; Marcin Kruszewski; Magdalena Dutka; Nicola J Camp; Rosalie G Waller; Waldemar Tomczak; Matteo Pelosini; Małgorzata Raźny; Herlander Marques; Niels Abildgaard; Marzena Wątek; Artur Jurczyszyn; Elizabeth E Brown; Sonja Berndt; Aleksandra Butrym; Celine M Vachon; Aaron D Norman; Susan L Slager; Federica Gemignani; Federico Canzian; Daniele Campa
Journal:  Int J Cancer       Date:  2021-03-30       Impact factor: 7.396

8.  Genetic determinants of multiple myeloma risk within the Wnt/beta-catenin signaling pathway.

Authors:  Alem A Belachew; Xifeng Wu; Rashida Callender; Rosalie Waller; Robert Z Orlowski; Celine M Vachon; Nicola J Camp; Elad Ziv; Michelle A T Hildebrandt
Journal:  Cancer Epidemiol       Date:  2021-06-30       Impact factor: 2.890

9.  Coinherited genetics of multiple myeloma and its precursor, monoclonal gammopathy of undetermined significance.

Authors:  Alyssa I Clay-Gilmour; Michelle A T Hildebrandt; Elizabeth E Brown; Jonathan N Hofmann; John J Spinelli; Graham G Giles; Wendy Cozen; Parveen Bhatti; Xifeng Wu; Rosalie G Waller; Alem A Belachew; Dennis P Robinson; Aaron D Norman; Jason P Sinnwell; Sonja I Berndt; S Vincent Rajkumar; Shaji K Kumar; Stephen J Chanock; Mitchell J Machiela; Roger L Milne; Susan L Slager; Nicola J Camp; Elad Ziv; Celine M Vachon
Journal:  Blood Adv       Date:  2020-06-23

10.  Genome-wide association study identifies variation at 6q25.1 associated with survival in multiple myeloma.

Authors:  David C Johnson; Niels Weinhold; Jonathan S Mitchell; Bowang Chen; Martin Kaiser; Dil B Begum; Jens Hillengass; Uta Bertsch; Walter A Gregory; David Cairns; Graham H Jackson; Asta Försti; Jolanta Nickel; Per Hoffmann; Markus M Nöethen; Owen W Stephens; Bart Barlogie; Faith E Davis; Kari Hemminki; Hartmut Goldschmidt; Richard S Houlston; Gareth J Morgan
Journal:  Nat Commun       Date:  2016-01-08       Impact factor: 14.919

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