Literature DB >> 26195751

Preventing clonal evolutionary processes in cancer: Insights from mathematical models.

Ignacio A Rodriguez-Brenes1, Dominik Wodarz2.   

Abstract

Clonal evolutionary processes can drive pathogenesis in human diseases, with cancer being a prominent example. To prevent or treat cancer, mechanisms that can potentially interfere with clonal evolutionary processes need to be understood better. Mathematical modeling is an important research tool that plays an ever-increasing role in cancer research. This paper discusses how mathematical models can be useful to gain insights into mechanisms that can prevent disease initiation, help analyze treatment responses, and aid in the design of treatment strategies to combat the emergence of drug-resistant cells. The discussion will be done in the context of specific examples. Among defense mechanisms, we explore how replicative limits and cellular senescence induced by telomere shortening can influence the emergence and evolution of tumors. Among treatment approaches, we consider the targeted treatment of chronic lymphocytic leukemia (CLL) with tyrosine kinase inhibitors. We illustrate how basic evolutionary mathematical models have the potential to make patient-specific predictions about disease and treatment outcome, and argue that evolutionary models could become important clinical tools in the field of personalized medicine.

Entities:  

Keywords:  cancer; clonal evolution; mathematical models; targeted therapy; telomeres

Mesh:

Year:  2015        PMID: 26195751      PMCID: PMC4517241          DOI: 10.1073/pnas.1501730112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  64 in total

1.  Cancer. TERT promoter mutations and telomerase reactivation in urothelial cancer.

Authors:  Sumit Borah; Linghe Xi; Arthur J Zaug; Natasha M Powell; Garrett M Dancik; Scott B Cohen; James C Costello; Dan Theodorescu; Thomas R Cech
Journal:  Science       Date:  2015-02-05       Impact factor: 47.728

2.  Cells carrying nonlymphoma-associated bcl-2/IgH rearrangements (NLABR) are phenotypically related to follicular lymphoma and can establish as long-term persisting clonal populations.

Authors:  Marco Ladetto; Barbara Mantoan; Federica De Marco; Daniela Drandi; Chiara Aguzzi; Monica Astolfi; Sonia Vallet; Irene Ricca; Maria Dell' Aquila; Gloria Pagliano; Luigia Monitillo; Berardino Pollio; Loredana Santo; Carmen Cristiano; Alberto Rocci; Roberto Francese; Chiara Lobetti Bodoni; Alessandra Borchiellini; Piercarla Schinco; Mario Boccadoro; Corrado Tarella
Journal:  Exp Hematol       Date:  2006-12       Impact factor: 3.084

3.  High-throughput telomere length quantification by FISH and its application to human population studies.

Authors:  Andrés Canela; Elsa Vera; Peter Klatt; María A Blasco
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

4.  The bcl-2/IgH rearrangement in a population of 204 healthy individuals: occurrence, age and gender distribution, breakpoints, and detection method validity.

Authors:  Christina Schmitt; Brigitta Balogh; Alexander Grundt; Christian Buchholtz; Albrecht Leo; Axel Benner; Manfred Hensel; Anthony D Ho; Eugen Leo
Journal:  Leuk Res       Date:  2005-11-16       Impact factor: 3.156

5.  Drug resistance in cancer: principles of emergence and prevention.

Authors:  Natalia L Komarova; Dominik Wodarz
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-24       Impact factor: 11.205

6.  Tumor morphology and phenotypic evolution driven by selective pressure from the microenvironment.

Authors:  Alexander R A Anderson; Alissa M Weaver; Peter T Cummings; Vito Quaranta
Journal:  Cell       Date:  2006-12-01       Impact factor: 41.582

7.  Transformation from committed progenitor to leukaemia stem cell initiated by MLL-AF9.

Authors:  Andrei V Krivtsov; David Twomey; Zhaohui Feng; Matthew C Stubbs; Yingzi Wang; Joerg Faber; Jason E Levine; Jing Wang; William C Hahn; D Gary Gilliland; Todd R Golub; Scott A Armstrong
Journal:  Nature       Date:  2006-07-16       Impact factor: 49.962

Review 8.  Immune surveillance of tumors.

Authors:  Jeremy B Swann; Mark J Smyth
Journal:  J Clin Invest       Date:  2007-05       Impact factor: 14.808

Review 9.  Shelterin: the protein complex that shapes and safeguards human telomeres.

Authors:  Titia de Lange
Journal:  Genes Dev       Date:  2005-09-15       Impact factor: 12.890

10.  The stem cell population of the human colon crypt: analysis via methylation patterns.

Authors:  Pierre Nicolas; Kyoung-Mee Kim; Darryl Shibata; Simon Tavaré
Journal:  PLoS Comput Biol       Date:  2007-01-02       Impact factor: 4.475

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  11 in total

1.  In the light of evolution IX: Clonal reproduction: Alternatives to sex.

Authors:  Michel Tibayrenc; John C Avise; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

2.  Modeling heterogeneous tumor growth dynamics and cell-cell interactions at single-cell and cell-population resolution.

Authors:  Leonard A Harris; Samantha Beik; Patricia M M Ozawa; Lizandra Jimenez; Alissa M Weaver
Journal:  Curr Opin Syst Biol       Date:  2019-09-16

Review 3.  A population genetics perspective on the determinants of intra-tumor heterogeneity.

Authors:  Zheng Hu; Ruping Sun; Christina Curtis
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-06       Impact factor: 10.680

4.  The role of telomere shortening in carcinogenesis: A hybrid stochastic-deterministic approach.

Authors:  Ignacio A Rodriguez-Brenes; Natalia L Komarova; Dominik Wodarz
Journal:  J Theor Biol       Date:  2018-10-10       Impact factor: 2.691

Review 5.  Targeting minimal residual disease: a path to cure?

Authors:  Marlise R Luskin; Mark A Murakami; Scott R Manalis; David M Weinstock
Journal:  Nat Rev Cancer       Date:  2018-01-29       Impact factor: 60.716

6.  Multidisciplinary insight into clonal expansion of HTLV-1-infected cells in adult T-cell leukemia via modeling by deterministic finite automata coupled with high-throughput sequencing.

Authors:  Amir Farmanbar; Sanaz Firouzi; Sung-Joon Park; Kenta Nakai; Kaoru Uchimaru; Toshiki Watanabe
Journal:  BMC Med Genomics       Date:  2017-01-31       Impact factor: 3.063

Review 7.  DNA Damage/Repair Management in Cancers.

Authors:  Jehad F Alhmoud; John F Woolley; Ala-Eddin Al Moustafa; Mohammed Imad Malki
Journal:  Cancers (Basel)       Date:  2020-04-23       Impact factor: 6.639

8.  Three-dimensional tumor growth in time-varying chemical fields: a modeling framework and theoretical study.

Authors:  Markos Antonopoulos; Dimitra Dionysiou; Georgios Stamatakos; Nikolaos Uzunoglu
Journal:  BMC Bioinformatics       Date:  2019-08-27       Impact factor: 3.169

9.  The changing 50% inhibitory concentration (IC50) of cisplatin: a pilot study on the artifacts of the MTT assay and the precise measurement of density-dependent chemoresistance in ovarian cancer.

Authors:  Yifeng He; Qiujing Zhu; Mo Chen; Qihong Huang; Wenjing Wang; Qing Li; Yuting Huang; Wen Di
Journal:  Oncotarget       Date:  2016-10-25

10.  Rapid Induction of the Unfolded Protein Response and Apoptosis by Estrogen Mimic TTC-352 for the Treatment of Endocrine-Resistant Breast Cancer.

Authors:  Balkees Abderrahman; Philipp Y Maximov; Ramona F Curpan; Sean W Fanning; Jay S Hanspal; Ping Fan; Charles E Foulds; Yue Chen; Anna Malovannaya; Antrix Jain; Rui Xiong; Geoffrey L Greene; Debra A Tonetti; Gregory R J Thatcher; V Craig Jordan
Journal:  Mol Cancer Ther       Date:  2020-11-11       Impact factor: 6.009

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