Literature DB >> 26187069

The 5'-UTR of DDB2 harbors an IRES element and upregulates translation during stress conditions.

Wenyan Dai1, Wennan Ma1, Qi Li1, Yifen Tao1, Pengpeng Ding1, Ruiyu Zhu2, Jian Jin3.   

Abstract

DDB2 is a tumor-inhibiting factor not only involved a major DNA repair mechanism in the Nucleotide Excision Repair (NER), but also correlated with cell apoptosis in the DNA damage response pathway. During serum-starvation, we noted that the translation levels of DDB2 were increased. To evaluate whether the 5'-UTR of DDB2 harbors an IRES element, we used a bicistronic luciferase plasmid with the 5'-UTR of DDB2 inserted between two cistron coding regions. We found that DDB2 5'-UTR could initiate the downstream reporter, demonstrating that the 5'-UTR of DDB2 contained an IRES. The 5'-UTR of DDB2 was predicted into a relatively stable secondary structure by the Mfold program. We deleted the stem-loops in turn to analyze the core part of IRES and found that full length of the 5'-UTR was significant for the IRES activity. Furthermore, our data demonstrated that the DDB2 IRES activity was promoted during stress conditions. These results reveal a novel mechanism contributing to DDB2 expression.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DDB2; IRES activity; Internal ribosome entry segment; Translation

Mesh:

Substances:

Year:  2015        PMID: 26187069     DOI: 10.1016/j.gene.2015.07.032

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  6 in total

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Review 4.  Current Practice in Bicistronic IRES Reporter Use: A Systematic Review.

Authors:  Guus Gijsbertus Hubert van den Akker; Federico Zacchini; Bas Adrianus Catharina Housmans; Laura van der Vloet; Marjolein Maria Johanna Caron; Lorenzo Montanaro; Tim Johannes Maria Welting
Journal:  Int J Mol Sci       Date:  2021-05-14       Impact factor: 5.923

5.  IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES).

Authors:  Pandurang Kolekar; Abhijeet Pataskar; Urmila Kulkarni-Kale; Jayanta Pal; Abhijeet Kulkarni
Journal:  Sci Rep       Date:  2016-06-06       Impact factor: 4.379

6.  La Autoantigen Induces Ribosome Binding Protein 1 (RRBP1) Expression through Internal Ribosome Entry Site (IRES)-Mediated Translation during Cellular Stress Condition.

Authors:  Wenqing Gao; Qi Li; Ruiyu Zhu; Jian Jin
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  6 in total

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