Literature DB >> 26186289

Putting Non-coding RNA on Display with CRISPR.

Pablo Perez-Pinera1, Matthew F Jones2, Ashish Lal2, Timothy K Lu3.   

Abstract

In a recent issue of Nature Methods, Shechner et al. (2015) reported the development of CRISPR Display (CRISP-Disp), which is a sophisticated, flexible, modular, and multiplexable platform for targeting different types of non-coding RNAs (ncRNAs) to genomic loci. CRISP-Disp will facilitate synthetic-biology applications and enable the elucidation of ncRNA functions.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID： 26186289      PMCID： PMC6314022          DOI： 10.1016/j.molcel.2015.07.002

Source DB:  PubMed          Journal:  Mol Cell        ISSN： 1097-2765            Impact factor:   17.970


  9 in total

Review 1.  The noncoding RNA revolution-trashing old rules to forge new ones.

Authors:  Thomas R Cech; Joan A Steitz
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

2.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

3.  Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.

Authors:  Lei S Qi; Matthew H Larson; Luke A Gilbert; Jennifer A Doudna; Jonathan S Weissman; Adam P Arkin; Wendell A Lim
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

4.  Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.

Authors:  Jing Zhao; Bryan K Sun; Jennifer A Erwin; Ji-Joon Song; Jeannie T Lee
Journal:  Science       Date:  2008-10-31       Impact factor: 47.728

5.  Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.

Authors:  David M Shechner; Ezgi Hacisuleyman; Scott T Younger; John L Rinn
Journal:  Nat Methods       Date:  2015-06-01       Impact factor: 28.547

6.  The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

Authors:  Colleen A McHugh; Chun-Kan Chen; Amy Chow; Christine F Surka; Christina Tran; Patrick McDonel; Amy Pandya-Jones; Mario Blanco; Christina Burghard; Annie Moradian; Michael J Sweredoski; Alexander A Shishkin; Julia Su; Eric S Lander; Sonja Hess; Kathrin Plath; Mitchell Guttman
Journal:  Nature       Date:  2015-04-27       Impact factor: 49.962

7.  CRISPR RNA-guided activation of endogenous human genes.

Authors:  Morgan L Maeder; Samantha J Linder; Vincent M Cascio; Yanfang Fu; Quan H Ho; J Keith Joung
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

8.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

9.  Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas.

Authors:  Fahim Farzadfard; Samuel D Perli; Timothy K Lu
Journal:  ACS Synth Biol       Date:  2013-09-11       Impact factor: 5.110
  9 in total
  7 in total

Review 1.  A neuroscientist's guide to transgenic mice and other genetic tools.

Authors:  Shaghayegh Navabpour; Janine L Kwapis; Timothy J Jarome
Journal:  Neurosci Biobehav Rev       Date:  2019-12-13       Impact factor: 8.989

Review 2.  Noncoding RNA as regulators of cardiac fibrosis: current insight and the road ahead.

Authors:  Hui Tao; Jing-Jing Yang; Wei Hu; Kai-Hu Shi; Zi-Yu Deng; Jun Li
Journal:  Pflugers Arch       Date:  2016-01-20       Impact factor: 3.657

3.  Clustered Regularly Interspaced Short Palindromic Repeats/Cas9 Genetic Engineering: Robotic Genetic Surgery.

Authors:  Kaivalya Deshpande; Arpita Vyas; Archana Balakrishnan; Dinesh Vyas
Journal:  Am J Robot Surg       Date:  2015-12

Review 4.  Long non-coding RNA implicated in the invasion and metastasis of head and neck cancer: possible function and mechanisms.

Authors:  Xiaobo Luo; Yan Qiu; Yuchen Jiang; Fangman Chen; Lu Jiang; Yu Zhou; Hongxia Dan; Xin Zeng; Yu L Lei; Qianming Chen
Journal:  Mol Cancer       Date:  2018-01-24       Impact factor: 27.401

Review 5.  Beyond classic editing: innovative CRISPR approaches for functional studies of long non-coding RNA.

Authors:  Dahlia A Awwad
Journal:  Biol Methods Protoc       Date:  2019-12-13

6.  Single-molecule long-read sequencing reveals the potential impact of posttranscriptional regulation on gene dosage effects on the avian Z chromosome.

Authors:  Jianmei Wang; Yang Xi; Shengchao Ma; Jingjing Qi; Junpeng Li; Rongping Zhang; Chunchun Han; Liang Li; Jiwen Wang; Hehe Liu
Journal:  BMC Genomics       Date:  2022-02-11       Impact factor: 3.969

Review 7.  Interrogating lncRNA functions via CRISPR/Cas systems.

Authors:  Meira S Zibitt; Corrine Corrina R Hartford; Ashish Lal
Journal:  RNA Biol       Date:  2021-03-26       Impact factor: 4.652
  7 in total

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