| Literature DB >> 26175612 |
Jeanne Wilbrandt1, Paul Lee2, Helen Read3, Thomas Wesener1.
Abstract
Three populations of the pill millipede genus Trachysphaera Heller 1858 are present in Great Britain, one on the Isle of Wight, one in South Wales and one in mid-Wales. To identify and characterize the British Trachysphaera populations, the intraspecific and interspecific variation of the populations in South Wales and on the Isle of Wight were studied and evaluated in a first integrative study of members of Trachysphaera, utilizing barcoding and SEM. DNA was extracted from 28 British Trachysphaera and 10 French T. lobata (Ribaut 1954) specimens, one each of French T. cf. drescoi (Conde and Demange 1961) and T. pyrenaica (Ribaut 1908), and one of Spanish T. cf. rousseti (Demange 1959); the barcoding fragment of the COI gene was amplified and their genetic intra- and interpopulation distances compared with one another using two Italian T. spp. and one Croatian T. schmidti Heller 1858 specimens as near outgroups. To compare the genetic distances with the morphological characters, 15 characters of a total of 13 British Trachysphaera, together with two specimens of T.pyrenaica, two T. cf. drescoi and one of T. cf. rousseti were imaged, using the same individuals utilized for DNA extraction. Albeit both British populations are genetically distant, they are closely related (1.9-2.5% p-distance) to French T.lobata, corroborating results of earlier studies. Between different Trachysphaera species, genetic distance was high (16.7-18.8%). The morphological study showed the non-reliability of key taxonomic characters in Trachysphaera, with genetically identical individuals exhibiting morphological variation, especially on the telopods. The only observed morphological characters constant within and different between species were the number of rows of sclerotized bacilli on the tergites, as well as the shape of the male and female anal shield. Both, barcoding and the morphological study identify the British Trachysphaera populations as T. lobata.Entities:
Keywords: Glomerida; Integrative study; SEM; barcoding; taxonomic characters
Year: 2015 PMID: 26175612 PMCID: PMC4493372 DOI: 10.3897/BDJ.3.e5176
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Localities and method application. Locality ID [LocID] as given in Checklist Materials, Extracted specimens [# Extracted], PCR and sequencing success [# PCR success, # Sequencing success] and number of specimens studied under SEM [# SEM]. Numbers in parentheses refer to specimens where PCR and/or sequencing were unsuccessful at the ZFMK but successful at the BGI. More detailed locality info in Checklist section.
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| 1 | Isle of Wight, GB | 13 | 13 | 13 | 5 |
| 2 | South Wales, GB | 15 | 15 | 12 | 8 |
| 3 | Génis, FR | 10 | 4 (2) | - (2) | - |
| 4 | Grotte de l'Estellas, FR | 1 | - | - | 2 |
| 5 | Leitza, ESP | 1 | - | - | 1 |
| 6 | Sare, FR | 1 | - | - | 2 |
| 7 | Oropa, IT | 2 | 2 | 2 | - |
| 8 | Velika-Kapela, CRO | 1 | - (1) | - (1) | - |
Characters and states. Character numbers [C #], states are exemplified with SEM images partly in figures, partly with links to MorphBank, then given as MBiIDs.
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| Color of freshly preserved specimen. | (0) brownish (Fig. |
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| Collum (reduced tergite 1), number of toothed ridges (Fig. | (0) 4/5 ( |
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| Thoracic shield (enlarged tergite 2) anterior margin, number of rows of sclerotized nodules (Fig. | Real number |
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| Thoracic shield, number of rows of large sclerotized protuberances (Fig. | Real number |
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| Endotergum (underside of posterior margin of tergites), structure. | (0) simple margin with one row of sclerotized nodules, and single row of short setae (Fig. |
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| Endotergum, number of rows of setae. | (0) 1 (Fig. |
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| Endotergum, number of rows of sclerotized nodules. | (0) 1 (Fig. |
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| Male tergite 10, posterior margin, number of rows of large bacilli. | (0) 1 ( |
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| Female tergite 10, posterior margin, number of rows of large bacilli (Fig. | (0) 1 ( |
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| Male anal shield, shape. | (0) well-rounded ( |
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| Female anal shield, shape (Fig. | 0) well-rounded ( |
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| Male anal shield, setae at posterior margin. | (0) isolated, 1-2 rows, ( |
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| Female anal shield, setae at posterior margin (Fig. | (0) isolated, 1-2 rows, ( |
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| Male anal shield, large circular grooves. | (0) absent or hard to see ( |
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| Female anal shield, large circular grooves (Fig. | (0) absent or hard to see ( |
Character matrix. Abbreviations: [N] refers to number of individuals investigated by SEM; IoW = Isle of Wight population; U = character conflict within one population, i.e., unresolved.
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| 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| 1 | 0 | 0 | 1 | 0 | 0 | 0 | n/a | 0 | n/a | 1 | n/a | 0 | n/a | 1 | |
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| 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | |
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| 0 | 0 |
| 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
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| 0 | 0 | 0 | 1 | 1 | 0 | 0 |
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Additional sample information for specimens. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | TW01 |
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| b | TW02 | – |
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| c | TW03 | – |
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| d | TW04 | – |
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| e | TW05 | – |
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| f | TW11 | – |
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| g | TW12 |
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| h | TW13 |
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| i | TW14 |
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| j | TW15 | – |
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| k | TW16 | – |
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| l | TW17 |
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| m | TW18 | – |
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| n | TW19 | – |
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| o | TW20 | – |
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| p | TW21 | – | |
| q | TW22 |
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| r | TW23 | – |
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| s | TW24 |
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| t | TW25 |
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| u | TW26 |
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| v | TW27 | – | |
| w | TW28 | – |
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| x | TW29 |
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| y | TW30 |
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| z | TW31 | – |
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| aa | TW32 | – |
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| ab | TW33 | – | – |
| ac | TW47 | – | – |
| ad | TW48 | – | – |
| ae | TW49 | – | – |
| af | TW50 | – | – |
| ag | TW51 | – |
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| ah | TW52 | – |
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| ai | TW53 | – | – |
| aj | TW54 | – | – |
| ak | TW55 | – | – |
| al | TW57 | – | – |
Additional sample information for specimens. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | GEU157 | – | |
| b | GEU157 | – |
Additional sample information for specimen. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | GL017 | – |
Additional sample information for specimens. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | GEU158 | – | |
| b | GEU158 | – |
Additional sample information for specimen. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | BGI-MYR-16 | – |
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Additional sample information for sp. specimens. Material specimen number as used above, Extraction voucher number, MorphBank specimen ID (with the number of SEM images available in parentheses), NCBI GenBank accession number.
| Material specimen # | Extraction voucher # | MBspecimenID | GenBank accession # |
| a | TW06 | – | – |
| b | TW07 | – |
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Figure 3.Maximum Likelihood Tree of 32 COI sequences of and outgroup specimens. Rate model: discrete Gamma distribution, 5 categories (+G, parameter = 0.7759); nucleotide frequencies: A / T = 0.3273, C / G = 0.1727; tree is drawn to scale, branch lengths reflect number of substitutions per site; 1st, 2nd, 3rd codon positions and non-coding positions were included, gaps and missing data excluded; node values = 1000 replicates ML bootstrap support.
Figure 5a.TW1: , female, Isle of Wight; anterior view; scale bar: 400 µm
Figure 5d.TW29: , female, South Wales; endotergum (underside of tergite); scale bar: 20 µm
Figure 6c.posterior (anal) view (MBiID 852974)
Figure 6a.anterior view (MBiID 852943)
Figure 7c.posterior (anal) view (MBiID 853009)
Figure 7d.posterior (anal) view (MBiID 853008)
Figure 8c., anterior view (MBiID 852894)
Figure 8d., posterior (anal) view (MBiID 852898)