Literature DB >> 26167642

Imaging G protein-coupled receptors while quantifying their ligand-binding free-energy landscape.

David Alsteens1, Moritz Pfreundschuh1, Cheng Zhang2, Patrizia M Spoerri1, Shaun R Coughlin3, Brian K Kobilka2, Daniel J Müller1.   

Abstract

Imaging native membrane receptors and testing how they interact with ligands is of fundamental interest in the life sciences but has proven remarkably difficult to accomplish. Here, we introduce an approach that uses force-distance curve-based atomic force microscopy to simultaneously image single native G protein-coupled receptors in membranes and quantify their dynamic binding strength to native and synthetic ligands. We measured kinetic and thermodynamic parameters for individual protease-activated receptor-1 (PAR1) molecules in the absence and presence of antagonists, and these measurements enabled us to describe PAR1's ligand-binding free-energy landscape with high accuracy. Our nanoscopic method opens an avenue to directly image and characterize ligand binding of native membrane receptors.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26167642      PMCID: PMC5087271          DOI: 10.1038/nmeth.3479

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  40 in total

Review 1.  Proteinase-activated receptors.

Authors:  S R Macfarlane; M J Seatter; T Kanke; G D Hunter; R Plevin
Journal:  Pharmacol Rev       Date:  2001-06       Impact factor: 25.468

2.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

3.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

4.  Interpreting the widespread nonlinear force spectra of intermolecular bonds.

Authors:  Raymond W Friddle; Aleksandr Noy; James J De Yoreo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

5.  Localizing chemical groups while imaging single native proteins by high-resolution atomic force microscopy.

Authors:  Moritz Pfreundschuh; David Alsteens; Manuel Hilbert; Michel O Steinmetz; Daniel J Müller
Journal:  Nano Lett       Date:  2014-05-05       Impact factor: 11.189

6.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

7.  Cholesterol increases kinetic, energetic, and mechanical stability of the human β2-adrenergic receptor.

Authors:  Michael Zocher; Cheng Zhang; Søren G F Rasmussen; Brian K Kobilka; Daniel J Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-14       Impact factor: 11.205

8.  Ligand-specific interactions modulate kinetic, energetic, and mechanical properties of the human β2 adrenergic receptor.

Authors:  Michael Zocher; Juan J Fung; Brian K Kobilka; Daniel J Müller
Journal:  Structure       Date:  2012-06-28       Impact factor: 5.006

9.  Structure of the human glucagon class B G-protein-coupled receptor.

Authors:  Fai Yiu Siu; Min He; Chris de Graaf; Gye Won Han; Dehua Yang; Zhiyun Zhang; Caihong Zhou; Qingping Xu; Daniel Wacker; Jeremiah S Joseph; Wei Liu; Jesper Lau; Vadim Cherezov; Vsevolod Katritch; Ming-Wei Wang; Raymond C Stevens
Journal:  Nature       Date:  2013-07-17       Impact factor: 49.962

10.  High-resolution crystal structure of human protease-activated receptor 1.

Authors:  Cheng Zhang; Yoga Srinivasan; Daniel H Arlow; Juan Jose Fung; Daniel Palmer; Yaowu Zheng; Hillary F Green; Anjali Pandey; Ron O Dror; David E Shaw; William I Weis; Shaun R Coughlin; Brian K Kobilka
Journal:  Nature       Date:  2012-12-09       Impact factor: 49.962

View more
  21 in total

1.  Daniel J. Müller.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2015-09       Impact factor: 28.547

Review 2.  Imaging modes of atomic force microscopy for application in molecular and cell biology.

Authors:  Yves F Dufrêne; Toshio Ando; Ricardo Garcia; David Alsteens; David Martinez-Martin; Andreas Engel; Christoph Gerber; Daniel J Müller
Journal:  Nat Nanotechnol       Date:  2017-04-06       Impact factor: 39.213

3.  Molecular interactions and inhibition of the staphylococcal biofilm-forming protein SdrC.

Authors:  Cécile Feuillie; Cécile Formosa-Dague; Leanne M C Hays; Ophélie Vervaeck; Sylvie Derclaye; Marian P Brennan; Timothy J Foster; Joan A Geoghegan; Yves F Dufrêne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

4.  Nanomechanical mapping of first binding steps of a virus to animal cells.

Authors:  David Alsteens; Richard Newton; Rajib Schubert; David Martinez-Martin; Martin Delguste; Botond Roska; Daniel J Müller
Journal:  Nat Nanotechnol       Date:  2016-10-31       Impact factor: 39.213

Review 5.  Protease-activated receptors in hemostasis.

Authors:  Marvin T Nieman
Journal:  Blood       Date:  2016-04-28       Impact factor: 22.113

6.  Combining confocal and atomic force microscopy to quantify single-virus binding to mammalian cell surfaces.

Authors:  Richard Newton; Martin Delguste; Melanie Koehler; Andra C Dumitru; Pawel R Laskowski; Daniel J Müller; David Alsteens
Journal:  Nat Protoc       Date:  2017-10-05       Impact factor: 13.491

7.  Differentiating between Inactive and Active States of Rhodopsin by Atomic Force Microscopy in Native Membranes.

Authors:  Subhadip Senapati; Adolfo B Poma; Marek Cieplak; Sławomir Filipek; Paul S H Park
Journal:  Anal Chem       Date:  2019-05-16       Impact factor: 6.986

8.  Single-Molecule Force Probing of RGD-Binding Integrins on Pancreatic Cancer Cells.

Authors:  Lina Alhalhooly; Matthew I Confeld; Sung Oh Woo; Babak Mamnoon; Reed Jacobson; Shrinwanti Ghosh; Jiha Kim; Sanku Mallik; Yongki Choi
Journal:  ACS Appl Mater Interfaces       Date:  2022-02-03       Impact factor: 9.229

9.  Ligand binding pocket of a novel Allatostatin receptor type C of stick insect, Carausius morosus.

Authors:  Burcin Duan Sahbaz; Osman Ugur Sezerman; Hamdi Torun; Necla Birgül Iyison
Journal:  Sci Rep       Date:  2017-01-24       Impact factor: 4.379

10.  Identifying and quantifying two ligand-binding sites while imaging native human membrane receptors by AFM.

Authors:  Moritz Pfreundschuh; David Alsteens; Ralph Wieneke; Cheng Zhang; Shaun R Coughlin; Robert Tampé; Brian K Kobilka; Daniel J Müller
Journal:  Nat Commun       Date:  2015-11-12       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.