Literature DB >> 26166480

THOC2 Mutations Implicate mRNA-Export Pathway in X-Linked Intellectual Disability.

Raman Kumar1, Mark A Corbett1, Bregje W M van Bon2, Joshua A Woenig1, Lloyd Weir1, Evelyn Douglas3, Kathryn L Friend3, Alison Gardner1, Marie Shaw1, Lachlan A Jolly1, Chuan Tan1, Matthew F Hunter4, Anna Hackett5, Michael Field5, Elizabeth E Palmer5, Melanie Leffler5, Carolyn Rogers5, Jackie Boyle5, Melanie Bienek6, Corinna Jensen6, Griet Van Buggenhout7, Hilde Van Esch7, Katrin Hoffmann8, Martine Raynaud9, Huiying Zhao10, Robin Reed11, Hao Hu6, Stefan A Haas12, Eric Haan13, Vera M Kalscheuer6, Jozef Gecz14.   

Abstract

Export of mRNA from the cell nucleus to the cytoplasm is essential for protein synthesis, a process vital to all living eukaryotic cells. mRNA export is highly conserved and ubiquitous. Mutations affecting mRNA and mRNA processing or export factors, which cause aberrant retention of mRNAs in the nucleus, are thus emerging as contributors to an important class of human genetic disorders. Here, we report that variants in THOC2, which encodes a subunit of the highly conserved TREX mRNA-export complex, cause syndromic intellectual disability (ID). Affected individuals presented with variable degrees of ID and commonly observed features included speech delay, elevated BMI, short stature, seizure disorders, gait disturbance, and tremors. X chromosome exome sequencing revealed four missense variants in THOC2 in four families, including family MRX12, first ascertained in 1971. We show that two variants lead to decreased stability of THOC2 and its TREX-complex partners in cells derived from the affected individuals. Protein structural modeling showed that the altered amino acids are located in the RNA-binding domains of two complex THOC2 structures, potentially representing two different intermediate RNA-binding states of THOC2 during RNA transport. Our results show that disturbance of the canonical molecular pathway of mRNA export is compatible with life but results in altered neuronal development with other comorbidities.
Copyright © 2015 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26166480      PMCID: PMC4573269          DOI: 10.1016/j.ajhg.2015.05.021

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  45 in total

1.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

Review 2.  The diverse genetic landscape of neurodevelopmental disorders.

Authors:  Wen F Hu; Maria H Chahrour; Christopher A Walsh
Journal:  Annu Rev Genomics Hum Genet       Date:  2014       Impact factor: 8.929

3.  SCF-FBXO31 E3 ligase targets DNA replication factor Cdt1 for proteolysis in the G2 phase of cell cycle to prevent re-replication.

Authors:  Pegah Johansson; Jessie Jeffery; Fares Al-Ejeh; Renèe B Schulz; David F Callen; Raman Kumar; Kum Kum Khanna
Journal:  J Biol Chem       Date:  2014-05-14       Impact factor: 5.157

4.  Deleterious mutations in the essential mRNA metabolism factor, hGle1, in amyotrophic lateral sclerosis.

Authors:  Hannah M Kaneb; Andrew W Folkmann; Véronique V Belzil; Li-En Jao; Claire S Leblond; Simon L Girard; Hussein Daoud; Anne Noreau; Daniel Rochefort; Pascale Hince; Anna Szuto; Annie Levert; Sabrina Vidal; Catherine André-Guimont; William Camu; Jean-Pierre Bouchard; Nicolas Dupré; Guy A Rouleau; Susan R Wente; Patrick A Dion
Journal:  Hum Mol Genet       Date:  2014-10-24       Impact factor: 6.150

5.  The THO complex regulates pluripotency gene mRNA export and controls embryonic stem cell self-renewal and somatic cell reprogramming.

Authors:  Li Wang; Yi-Liang Miao; Xiaofeng Zheng; Brad Lackford; Bingying Zhou; Leng Han; Chengguo Yao; James M Ward; Adam Burkholder; Inna Lipchina; David C Fargo; Konrad Hochedlinger; Yongsheng Shi; Carmen J Williams; Guang Hu
Journal:  Cell Stem Cell       Date:  2013-12-05       Impact factor: 24.633

6.  Mutations in DCPS and EDC3 in autosomal recessive intellectual disability indicate a crucial role for mRNA decapping in neurodevelopment.

Authors:  Iltaf Ahmed; Rebecca Buchert; Mi Zhou; Xinfu Jiao; Kirti Mittal; Taimoor I Sheikh; Ute Scheller; Nasim Vasli; Muhammad Arshad Rafiq; M Qasim Brohi; Anna Mikhailov; Muhammad Ayaz; Attya Bhatti; Heinrich Sticht; Tanveer Nasr; Melissa T Carter; Steffen Uebe; André Reis; Muhammad Ayub; Peter John; Megerditch Kiledjian; John B Vincent; Rami Abou Jamra
Journal:  Hum Mol Genet       Date:  2015-02-20       Impact factor: 6.150

7.  Intellectual disability associated with a homozygous missense mutation in THOC6.

Authors:  Chandree L Beaulieu; Lijia Huang; A Micheil Innes; Marie-Andree Akimenko; Erik G Puffenberger; Charles Schwartz; Paul Jerry; Carole Ober; Robert A Hegele; D Ross McLeod; Jeremy Schwartzentruber; Jacek Majewski; Dennis E Bulman; Jillian S Parboosingh; Kym M Boycott
Journal:  Orphanet J Rare Dis       Date:  2013-04-26       Impact factor: 4.123

8.  De novo mutations in epileptic encephalopathies.

Authors:  Andrew S Allen; Samuel F Berkovic; Patrick Cossette; Norman Delanty; Dennis Dlugos; Evan E Eichler; Michael P Epstein; Tracy Glauser; David B Goldstein; Yujun Han; Erin L Heinzen; Yuki Hitomi; Katherine B Howell; Michael R Johnson; Ruben Kuzniecky; Daniel H Lowenstein; Yi-Fan Lu; Maura R Z Madou; Anthony G Marson; Heather C Mefford; Sahar Esmaeeli Nieh; Terence J O'Brien; Ruth Ottman; Slavé Petrovski; Annapurna Poduri; Elizabeth K Ruzzo; Ingrid E Scheffer; Elliott H Sherr; Christopher J Yuskaitis; Bassel Abou-Khalil; Brian K Alldredge; Jocelyn F Bautista; Samuel F Berkovic; Alex Boro; Gregory D Cascino; Damian Consalvo; Patricia Crumrine; Orrin Devinsky; Dennis Dlugos; Michael P Epstein; Miguel Fiol; Nathan B Fountain; Jacqueline French; Daniel Friedman; Eric B Geller; Tracy Glauser; Simon Glynn; Sheryl R Haut; Jean Hayward; Sandra L Helmers; Sucheta Joshi; Andres Kanner; Heidi E Kirsch; Robert C Knowlton; Eric H Kossoff; Rachel Kuperman; Ruben Kuzniecky; Daniel H Lowenstein; Shannon M McGuire; Paul V Motika; Edward J Novotny; Ruth Ottman; Juliann M Paolicchi; Jack M Parent; Kristen Park; Annapurna Poduri; Ingrid E Scheffer; Renée A Shellhaas; Elliott H Sherr; Jerry J Shih; Rani Singh; Joseph Sirven; Michael C Smith; Joseph Sullivan; Liu Lin Thio; Anu Venkat; Eileen P G Vining; Gretchen K Von Allmen; Judith L Weisenberg; Peter Widdess-Walsh; Melodie R Winawer
Journal:  Nature       Date:  2013-08-11       Impact factor: 49.962

9.  Pfam: the protein families database.

Authors:  Robert D Finn; Alex Bateman; Jody Clements; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Andreas Heger; Kirstie Hetherington; Liisa Holm; Jaina Mistry; Erik L L Sonnhammer; John Tate; Marco Punta
Journal:  Nucleic Acids Res       Date:  2013-11-27       Impact factor: 16.971

10.  A framework for the interpretation of de novo mutation in human disease.

Authors:  Kaitlin E Samocha; Elise B Robinson; Stephan J Sanders; Christine Stevens; Aniko Sabo; Lauren M McGrath; Jack A Kosmicki; Karola Rehnström; Swapan Mallick; Andrew Kirby; Dennis P Wall; Daniel G MacArthur; Stacey B Gabriel; Mark DePristo; Shaun M Purcell; Aarno Palotie; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Richard A Gibbs; Gerard D Schellenberg; James S Sutcliffe; Bernie Devlin; Kathryn Roeder; Benjamin M Neale; Mark J Daly
Journal:  Nat Genet       Date:  2014-08-03       Impact factor: 38.330

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  19 in total

1.  Robust imaging and gene delivery to study human lymphoblastoid cell lines.

Authors:  Lachlan A Jolly; Ying Sun; Renée Carroll; Claire C Homan; Jozef Gecz
Journal:  J Hum Genet       Date:  2018-06-20       Impact factor: 3.172

2.  Asymmetric Arginine Dimethylation Modulates Mitochondrial Energy Metabolism and Homeostasis in Caenorhabditis elegans.

Authors:  Liang Sha; Hiroaki Daitoku; Sho Araoi; Yuta Kaneko; Yuta Takahashi; Koichiro Kako; Akiyoshi Fukamizu
Journal:  Mol Cell Biol       Date:  2017-03-01       Impact factor: 4.272

3.  Pathogenic variants in nucleoporin TPR (translocated promoter region, nuclear basket protein) cause severe intellectual disability in humans.

Authors:  Nicole J Van Bergen; Katrina M Bell; Kirsty Carey; Russell Gear; Sean Massey; Edward K Murrell; Lyndon Gallacher; Kate Pope; Paul J Lockhart; Andrew Kornberg; Lynn Pais; Marzena Walkiewicz; Cas Simons; Vihandha O Wickramasinghe; Susan M White; John Christodoulou
Journal:  Hum Mol Genet       Date:  2022-02-03       Impact factor: 5.121

4.  Heterozygous loss-of-function variants of MEIS2 cause a triad of palatal defects, congenital heart defects, and intellectual disability.

Authors:  Rosalind Verheije; Gabriel S Kupchik; Bertrand Isidor; Hester Y Kroes; Sally Ann Lynch; Lara Hawkes; Maja Hempel; Bruce D Gelb; Jamal Ghoumid; Guylaine D'Amours; Kate Chandler; Christèle Dubourg; Sara Loddo; Zeynep Tümer; Charles Shaw-Smith; Mathilde Nizon; Michael Shevell; Evelien Van Hoof; Kwame Anyane-Yeboa; Gaetana Cerbone; Jill Clayton-Smith; Benjamin Cogné; Pierre Corre; Anniek Corveleyn; Marie De Borre; Tina Duelund Hjortshøj; Mélanie Fradin; Marc Gewillig; Elizabeth Goldmuntz; Greet Hens; Emmanuelle Lemyre; Hubert Journel; Usha Kini; Fanny Kortüm; Cedric Le Caignec; Antonio Novelli; Sylvie Odent; Florence Petit; Anya Revah-Politi; Nicholas Stong; Tim M Strom; Ellen van Binsbergen; Koenraad Devriendt; Jeroen Breckpot
Journal:  Eur J Hum Genet       Date:  2018-10-05       Impact factor: 4.246

5.  ALYREF mainly binds to the 5' and the 3' regions of the mRNA in vivo.

Authors:  Min Shi; Heng Zhang; Xudong Wu; Zhisong He; Lantian Wang; Shanye Yin; Bin Tian; Guohui Li; Hong Cheng
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

6.  Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy.

Authors:  Yu-Ri Lee; Kamal Khan; Kim Armfield-Uhas; Sujata Srikanth; Nicola A Thompson; Mercedes Pardo; Lu Yu; Joy W Norris; Yunhui Peng; Karen W Gripp; Kirk A Aleck; Chumei Li; Ed Spence; Tae-Ik Choi; Soo Jeong Kwon; Hee-Moon Park; Daseuli Yu; Won Do Heo; Marie R Mooney; Shahid M Baig; Ingrid M Wentzensen; Aida Telegrafi; Kirsty McWalter; Trevor Moreland; Chelsea Roadhouse; Keri Ramsey; Michael J Lyons; Cindy Skinner; Emil Alexov; Nicholas Katsanis; Roger E Stevenson; Jyoti S Choudhary; David J Adams; Cheol-Hee Kim; Erica E Davis; Charles E Schwartz
Journal:  Nat Commun       Date:  2020-07-23       Impact factor: 14.919

7.  The polyadenosine RNA-binding protein ZC3H14 interacts with the THO complex and coordinately regulates the processing of neuronal transcripts.

Authors:  Kevin J Morris; Anita H Corbett
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

8.  Germline heterozygous mutations in Nxf1 perturb RNA metabolism and trigger thrombocytopenia and lymphopenia in mice.

Authors:  Stéphane Chappaz; Charity W Law; Mark R Dowling; Kirstyn T Carey; Rachael M Lane; Linh H Ngo; Vihandha O Wickramasinghe; Gordon K Smyth; Matthew E Ritchie; Benjamin T Kile
Journal:  Blood Adv       Date:  2020-04-14

Review 9.  The role of TREX in gene expression and disease.

Authors:  Catherine G Heath; Nicolas Viphakone; Stuart A Wilson
Journal:  Biochem J       Date:  2016-10-01       Impact factor: 3.857

10.  Skewed X-Chromosome Inactivation and Compensatory Upregulation of Escape Genes Precludes Major Clinical Symptoms in a Female With a Large Xq Deletion.

Authors:  Cíntia B Santos-Rebouças; Raquel Boy; Evelyn Q Vianna; Andressa P Gonçalves; Rafael M Piergiorge; Bianca B Abdala; Jussara M Dos Santos; Veluma Calassara; Filipe B Machado; Enrique Medina-Acosta; Márcia M G Pimentel
Journal:  Front Genet       Date:  2020-03-04       Impact factor: 4.599

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