Literature DB >> 26160606

Understanding next generation sequencing in oncology: A guide for oncologists.

Sing Yu Moorcraft1, David Gonzalez1, Brian A Walker2.   

Abstract

DNA sequencing is now faster and cheaper than ever before, due to the development of next generation sequencing (NGS) technologies. NGS is now widely used in the research setting and is becoming increasingly utilised in clinical practice. However, due to evolving clinical commitments, increased workload and lack of training opportunities, many oncologists may be unfamiliar with the terminology and technology involved. This can lead to oncologists feeling daunted by issues such as how to interpret the vast amounts of data generated by NGS and the differences between sequencing platforms. This review article explains common concepts and terminology, summarises the process of DNA sequencing (including data analysis) and discusses the main factors to consider when deciding on a sequencing method. This article aims to improve oncologists' understanding of the most commonly used sequencing platforms and the ongoing challenges faced in expanding the use of NGS into routine clinical practice.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Keywords:  Bioinformatics; Genetics; NGS; Next generation sequencing

Mesh:

Substances:

Year:  2015        PMID: 26160606     DOI: 10.1016/j.critrevonc.2015.06.007

Source DB:  PubMed          Journal:  Crit Rev Oncol Hematol        ISSN: 1040-8428            Impact factor:   6.312


  12 in total

1.  Multigene Panel Sequencing Reveals Cancer-Specific and Common Somatic Mutations in Colorectal Cancer Patients: An Egyptian Experience.

Authors:  Amira Salah El-Din Youssef; Mohamed A Abdel-Fattah; Mai M Lotfy; Auhood Nassar; Mohamed Abouelhoda; Ahmed O Touny; Zeinab K Hassan; Mohammed Mohey Eldin; Abeer A Bahnassy; Hussein Khaled; Abdel Rahman N Zekri
Journal:  Curr Issues Mol Biol       Date:  2022-03-18       Impact factor: 2.976

2.  How does inflammation drive mutagenesis in colorectal cancer?

Authors:  Chia Wei Hsu; Mark L Sowers; Willie Hsu; Eduardo Eyzaguirre; Suimin Qiu; Celia Chao; Charles P Mouton; Yuri Fofanov; Pomila Singh; Lawrence C Sowers
Journal:  Trends Cancer Res       Date:  2017

Review 3.  Prospects of Non-Coding Elements in Genomic DNA Based Gene Therapy.

Authors:  S P Simna; Zongchao Han
Journal:  Curr Gene Ther       Date:  2022       Impact factor: 4.676

Review 4.  Clinical Application of Targeted Next Generation Sequencing for Colorectal Cancers.

Authors:  Quitterie Fontanges; Ricardo De Mendonca; Isabelle Salmon; Marie Le Mercier; Nicky D'Haene
Journal:  Int J Mol Sci       Date:  2016-12-16       Impact factor: 5.923

5.  Novel putative drivers revealed by targeted exome sequencing of advanced solid tumors.

Authors:  Antonio Pannuti; Aleksandra Filipovic; Chindo Hicks; Elliot Lefkowitz; Travis Ptacek; Justin Stebbing; Lucio Miele
Journal:  PLoS One       Date:  2018-03-23       Impact factor: 3.240

Review 6.  Pharmacogenomic Testing: Clinical Evidence and Implementation Challenges.

Authors:  Catriona Hippman; Corey Nislow
Journal:  J Pers Med       Date:  2019-08-07

Review 7.  Molecular profiling for precision cancer therapies.

Authors:  Eoghan R Malone; Marc Oliva; Peter J B Sabatini; Tracy L Stockley; Lillian L Siu
Journal:  Genome Med       Date:  2020-01-14       Impact factor: 11.117

Review 8.  Novel applications of next-generation sequencing in breast cancer research.

Authors:  Rong Ma; Jianping Gong; Xiaowei Jiang
Journal:  Genes Dis       Date:  2017-07-18

9.  Differentially expressed lncRNAs and mRNAs identified by NGS analysis in colorectal cancer patients.

Authors:  Meng Li; Lian-Mei Zhao; Suo-Lin Li; Jing Li; Bo Gao; Fei-Fei Wang; Sheng-Pu Wang; Xu-Hua Hu; Jian Cao; Gui-Ying Wang
Journal:  Cancer Med       Date:  2018-07-23       Impact factor: 4.452

Review 10.  Liquid Profiling for Cancer Patient Stratification in Precision Medicine-Current Status and Challenges for Successful Implementation in Standard Care.

Authors:  Verena Haselmann; Maren Hedtke; Michael Neumaier
Journal:  Diagnostics (Basel)       Date:  2022-03-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.