| Literature DB >> 26154559 |
Asta Hautamäki1, Sanna Seitsonen1, Juha M Holopainen1, Jukka A Moilanen1, Jarno Kivioja2, Päivi Onkamo3, Irma Järvelä2, Ilkka Immonen1.
Abstract
PURPOSE: To study the association of the single nucleotide polymorphism (SNP) rs4073 in the interleukin-8 (IL-8) promoter region with the diagnosis and age of onset of exudative age-related macular degeneration (AMD) in association with the known genetic risk factors for AMD and tobacco smoking.Entities:
Keywords: exudative age-related macular degeneration; genetic associations; interleukin-8; single nucleotide polymorphism
Mesh:
Substances:
Year: 2015 PMID: 26154559 PMCID: PMC4758390 DOI: 10.1111/aos.12799
Source DB: PubMed Journal: Acta Ophthalmol ISSN: 1755-375X Impact factor: 3.761
Genotype frequencies and smoking history in exudative age‐related macular degeneration (AMD) patients and all AMD patients (dry or exudative) compared with control subjects
| Polymorphisms | Controls ( | Exudative AMD ( | Pearson chi‐square | Any AMD ( | Pearson chi‐square |
|---|---|---|---|---|---|
| IL‐8 rs4073 A→T | |||||
| AA | 26 (21.8%) | 45 (15.0%) | p = 0.120 | 61 (16.4%) | p = 0.275 |
| AT | 52 (43.7%) | 161 (53.5%) | 190 (50.9%) | ||
| TT | 41 (34.5%) | 95 (31.6%) | 122 (32.7%) | ||
| NA | 0 | 0 | 0 | ||
| CFH rs1061170 T→C | |||||
| CC | 13 (11.5%) | 109 (36.2%) | p < 0.0001 | 129 (39.2%) | p < 0.0001 |
| CT | 59 (52.2%) | 154 (51.2%) | 162 (49.2%) | ||
| TT | 41 (36.3%) | 38 (12.6%) | 38 (11.6%) | ||
| NA | 6 | 0 | 44 | ||
| ARMS2 rs10490924 G→T | |||||
| TT | 2 (1.8%) | 63 (21.1%) | p < 0.0001 | 70 (21.5%) | p < 0.0001 |
| TG | 42 (36.8%) | 157 (52.7%) | 170 (52.1%) | ||
| GG | 70 (61.4%) | 78 (26.2%) | 86 (26.4%) | ||
| NA | 5 | 3 | 47 | ||
| C3 rs2230199 C→G | |||||
| GG | 4 (3.6%) | 9 (3.0%) | p = 0.437 | 11 (3.4%) | p = 0.422 |
| GC | 27 (24.3%) | 92 (30.8%) | 101 (30.9%) | ||
| CC | 80 (72.1%) | 198 (66.2%) | 215 (65.7%) | ||
| NA | 8 | 2 | 46 | ||
| Tobacco | |||||
| Current smoker | 3 (2.6%) | 50 (17.5%) | p < 0.0001 | 64 (18.0%) | p < 0.0001 |
| Ex‐smoker | 25 (21.9%) | 81 (28.3%) | 95 (26.8%) | ||
| Never smoker | 86 (75.4%) | 155 (54.2%) | 196 (55.2%) | ||
| NA | 5 | 15 | 18 | ||
NA = data not available.
Age of onset of exudative age‐related macular degeneration (AMD)
| Polymorphisms | Age of Onset of Exudative AMD Years, median (range) | Mann–Whitney |
|---|---|---|
| IL‐8 rs4073 A→T | ||
| AA | 71.7 (55.5–84.3) | AA versus AT and TT |
| AT | 75.5 (56.1–91.2) | p = 0.009 |
| TT | 75.6 (53.1–87.6) | |
| CFH rs1061170 T→C | ||
| CC | 73.8 (53.1–91.2) | CC versus CT and TT |
| TC | 76.3 (59.4–87.6) | p = 0.016 |
| TT | 76.2 (63.9–87.0) | |
| ARMS2 rs10490924 G→T | ||
| TT | 71.3 (55.5–87.6) | TT versus TG and GG |
| GT | 76.2 (53.1–91.2) | p = 0.001 |
| GG | 75.8 (54.5–88.1) | |
| C3 rs2230199 C→G | ||
| GG | 74.7 (63.1–85.1) | CC versus CG and GG |
| CG | 74.8 (55.4–87.6) | p = 0.267 |
| CC | 75.8 (53.1–91.2) | |
| Tobacco | ||
| Current smoker | 70.1 (54.5–82.3) | Current versus never and ex‐smokers |
| Ex‐smoker | 76.5 (62.8–88.1) | |
| Never Smoker | 75.0 (53.1–91.2) | p = 0.002 |
Multivariate model built with the generalized linear model procedure of SPSS 22 to estimate the effects of studied variables on the age of onset of exudative AMD
| Parameter | B | SE | 95% Wald CI | Hypothesis Test | ||
|---|---|---|---|---|---|---|
| Lower | Upper | Wald chi‐square | p‐value | |||
| IL‐8 rs4073 A→T | ||||||
| AA | −2.502 | 1.1448 | −4.746 | −0.258 | 4.776 | 0.029 |
| AT or TT | Reference | |||||
| CFH rs1061170 T→C | ||||||
| CC | −2.171 | 0.8170 | −3.773 | −0.570 | 7.064 | 0.008 |
| CT or TT | Reference | |||||
| ARMS rs10490924 G→T | ||||||
| TT | −2.973 | 0.9811 | −4.896 | −1.050 | 9.181 | 0.002 |
| TG or GG | Reference | |||||
| Smoking | ||||||
| Current smoker | −3.885 | 1.0613 | −5.965 | −1.805 | 13.398 | 0.0003 |
| Non‐ or ex‐smoker | Reference | |||||
| Intercept | 2.240 | 0.5966 | 1.071 | 3.409 | 14.100 | <0.0001 |
Dependent variable: age – 75.0 years (median age of the exudative study patients).
Figure 1The effects of single nucleotide polymorphisms (SNPs) rs4073, rs1061170 and rs10490924, as well as smoking, were estimated with Cox proportional hazards models in exudative AMD patients together with control subjects (left column), in all patients with exudative AMD (middle column) and in exudative AMD patients diagnosed within the last 5 years of data collection (right column). n, number of cases available in the analysis (no missing values).
Figure 2The sum of homozygous risk genotypes in , and , and current smoking on the age of onset of exudative AMD (*p < 0.05, ***p < 0.001, ****p < 0.0001, Mann–Whitney U‐test).