| Literature DB >> 30352574 |
Jun Zhang1, Shuang Li1, Shuqiong Hu2, Jiguo Yu1, Yi Xiang3.
Abstract
BACKGROUND: The purpose of this study is to discuss whether genetic variants (rs2230199, rs1047286, rs2230205, and rs2250656) in the C3 gene account for a significant risk of advanced AMD.Entities:
Keywords: Age-related macular degeneration; C3 gene; Meta-analysis; Polymorphism
Mesh:
Substances:
Year: 2018 PMID: 30352574 PMCID: PMC6199710 DOI: 10.1186/s12886-018-0945-5
Source DB: PubMed Journal: BMC Ophthalmol ISSN: 1471-2415 Impact factor: 2.209
Fig. 1Flow diagram presenting the result of literature searching process in meta-analysis
The General Characteristics of All Studies Included in our Meta-Analysis
| Refs | Year | Country | Ethnicity | Case/Control | Mean age of AMD | Mean age of control | Typing teaching | Study design |
|---|---|---|---|---|---|---|---|---|
| Yate et al. [ | 2007 | UK | Caucasian | 603/350 | 79.4 ± 7.2 | 75.3 ± 7.8 | SNaPshot | Sex-,age-,ethnic-,matched |
| Yate et al. [ | 2007 | Scotland | Caucasian | 244/351 | 77.8 ± 9.2 | 78.0 ± 8.5 | TaqMan | Sex-,age-,ethnic-,matched |
| Maller et al. [ | 2007 | America | Caucasian | 1238/934 | NA | NA | MALDI-TOF MS | Age-,ethnic-, matched |
| Edwards et al. [ | 2008 | America | Caucasian | 444/300 | NA | NA | Illumina GoldenGate | Age-,ethnic-, matched |
| Spencer et al. [ | 2008 | America | Caucasian | 286/701 | 76.5 ± 7.7 | 66.9 ± 8.3 | TaqMan | Sex-,age-,ethnic-,matched |
| Scholl et al. [ | 2009 | German | Caucasian | 99/612 | 71.8 ± 7.4 | 76.2 ± 5.3 | MALDI-TOF MS | Sex-,age-,ethnic-,matched |
| Francis et al. [ | 2009 | America | Caucasian | 211/187 | 79 | 74 | Sequencing | Age-,ethnic-, matched |
| Park et al. [ | 2009 | America | Caucasian | 898/599 | 80.6 ± 5.0 | 77.6 ± 4.3 | Illumina GoldenGate | Sex-,age-,ethnic-,matched |
| Despriet et al. [ | 2009 | Netherlands | Caucasian | 268/173 | 78.7 ± 7.7 | 74.1 ± 6.3 | TaqMan | Sex-,age-,ethnic-,matched |
| Bergeron et al. [ | 2009 | America | Caucasian | 421/215 | 64.8 | 66.5 | TaqMan | Sex-,age-,ethnic-,matched |
| Reynolds et al. [ | 2009 | America | Caucasian | 120/60 | 82.0 ± 6.9 | 79.0 ± 4.4 | MALDI-TOF MS | Sex-,age-,ethnic-,matched |
| Pei et al.[ | 2009 | China | East Asian | 123/130 | 70.6 ± 8.2 | 69.2 ± 10.1 | MALDI-TOF MS | Sex-,age-,ethnic-, matched |
| Cui et al. [ | 2010 | China | East Asian | 150/161 | 66.6 ± 8.4 | 65.7 ± 7.8 | PCR-RFLP/ Sequencing | Sex-,age-,ethnic-, matched |
| Zerbib et al. [ | 2010 | France | Caucasian | 1080/406 | 79.0 ± 7.4 | 67.8 ± 7.7 | TaqMan | Sex-,age-,ethnic-, matched |
| McKay et al. [ | 2010 | Northern Ireland | Caucasian | 437/436 | 77.6 | 74.9 | SNaPshot | Sex-,age-,ethnic-, matched |
| Chen et al. [ | 2010 | America | Caucasian | 2157/1150 | 78.6 | 74.1 | Illumina GoldenGate | Sex-,age-,ethnic-, matched |
| Kopplin et al. [ | 2010 | America | Caucasian | 377/161 | NA | NA | Affymetrix GeneChip | Age-,ethnic-, matched |
| Liu et al. [ | 2010 | China | East Asian | 158/220 | 64.0 ± 6.6 | 63.0 ± 7.8 | SNaPshot | Sex-,age-,ethnic-, matched |
| Yu et al. [ | 2011 | America | Caucasian | 1082/221 | 79.5 ± 5.5 | 77.0 ± 4.6 | MALDI-TOF MS | Sex-,age-,ethnic-, matched |
| Chen et al. [ | 2011 | America | Caucasian | 1335/509 | 70.2 ± 5.1 | 67.0 ± 4.3 | SNaPshot | Sex-,age-,ethnic-, matched |
| Hageman et al. [ | 2011 | America | Caucasian | 1132/822 | 76.5 ± 7.1 | 76.4 ± 7.3 | NA | Sex-,age-,ethnic-, matched |
| Peter et al. [ | 2011 | America | Caucasian | 48/1260 | NA | NA | TaqMan | Age-,ethnic-, matched |
| Yanagisawa et al. [ | 2011 | Japan | East Asian | 420/197 | 74.0 ± 7.5 | 72.0 ± 6.0 | TaqMan | Sex-,age-,ethnic-, matched |
| Martinez et al. [ | 2012 | Spain | Caucasian | 259/191 | NA | NA | SNaPshot | Age-,ethnic-, matched |
| Smailhodzic et al. [ | 2012 | Netherlands | Caucasian | 197/150 | NA | NA | Sequencing | Sex-,age-,ethnic-, matched |
| Buentello et al. [ | 2012 | Mexico | Caucasian | 159/152 | 76.4 ± 8.1 | 73.5 ± 6.8 | PCR-RFLP | Sex-,age-,ethnic-, matched |
| Tian et al. [ | 2012 | China | East Asian | 535/469 | NA | NA | MALDI-TOF MS | Age-,ethnic-, matched |
| Losonczy et al. [ | 2012 | Hungary | Caucasian | 275/106 | 76.0 ± 7.3 | 79.1 ± 6.1 | PCR-RFLP | Sex-,age-,ethnic-, matched |
| Cipriani et al. [ | 2012 | UK | Caucasian | 893/2199 | 78.6 ± 7.5 | NA | Illumina BeadChip | Sex-,age-,ethnic-, matched |
| Jaouni et al. [ | 2012 | Israel | Middle East | 317/159 | 78.1 ± 7.6 | 70.8 ± 8.2 | PCR-RFLP | Sex-,age-,ethnic-, matched |
| Wu et al. [ | 2013 | China | East Asian | 165/216 | 69.4 ± 10 | 64.5 ± 8.0 | TaqMan | Sex-,age-,ethnic-, matched |
| Helgason et al. [ | 2013 | Iceland | Caucasian | 1107/2869 | NA | NA | Illumina BeadChip | Age-,ethnic-, matched |
| Helgason et al. [ | 2013 | America | Caucasian | 1525/1288 | NA | NA | Illumina BeadChip | Age-,ethnic-, matched |
| Contreras et al. [ | 2014 | Mexico | Caucasian | 273/201 | 76.0 ± 8.0 | 65.5 ± 9.8 | TaqMan | Sex-,age-,ethnic-, matched |
| Caire et al. [ | 2014 | Spain | Caucasian | 154/141 | 75.4 ± 7.2 | 78.5 ± 7.2 | SNaPshot | Sex-,age-,ethnic-, matched |
| Liu et al. [ | 2014 | China | East Asian | 200/275 | 75.3 ± 7.7 | 74.3 ± 7.6 | TaqMan | Sex-,age-,ethnic-, matched |
| Hautamaki et al. [ | 2015 | Finland | Caucasian | 301/119 | NA | NA | Sequencing | Age-,ethnic-, matched |
| Saksens et al. [ | 2016 | Netherlands | Caucasian | 571/900 | 76.6 ± 8.5 | 71.3 ± 6.7 | KASP | Sex-,age-,ethnic-, matched |
| Bonyadi et al. [ | 2017 | Iran | Middle East | 266/228 | 76.4 ± 7.6 | 72.7 ± 6.8 | PCR-RFLP | Sex-,age-,ethnic-, matched |
| Habibi et al. [ | 2017 | Tunisia | Middle East | 145/207 | 73.1 ± 8.1 | NA | PCR-SSP | Age-,ethnic-, matched |
Assessment of potential bias in included studies
| Year | First author | Bias in selection of cases | Bias in selection of controls | Bias in genotyping controls | Bias in population stratification | Confounding bias | Multiple test and Selective outcome reports |
|---|---|---|---|---|---|---|---|
| 2007 | Yate et al. [ | NO | NO | NO | NO | NO | NO |
| 2007 | Maller et al. [ | NO | NO | NO | NO | NO | NO |
| 2008 | Edwards et al. [ | NO | NO | NO | NO | NO | NO |
| 2008 | Spencer et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Scholl et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Francis et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Park et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Despriet et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Bergeron et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Reynolds et al. [ | NO | NO | NO | NO | NO | NO |
| 2009 | Pei et al. [ | NO | NO | NO | NO | NO | NO |
| 2010 | Cui et al. [ | NO | NO | NO | NO | NO | NO |
| 2010 | Zerbib et al. [ | NO | NO | NO | NO | NO | NO |
| 2010 | McKay et al. [ | NO | NO | NO | NO | NO | NO |
| 2010 | Chen et al. [ | NO | NO | NO | NO | NO | NO |
| 2010 | Kopplin et al. [ | NO | NO | NO | Unclear | NO | NO |
| 2010 | Liu et al. [ | NO | NO | NO | NO | NO | NO |
| 2011 | Yu et al. [ | NO | NO | NO | NO | NO | NO |
| 2011 | Chen et al. [ | NO | NO | NO | NO | NO | NO |
| 2011 | Hageman et al. [ | NO | NO | NO | Unclear | NO | NO |
| 2011 | Peter et al. [ | Yes | NO | NO | Unclear | NO | NO |
| 2011 | Yanagisawa et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Martinez et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Smailhodzic et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Buentello et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Tian et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Losonczy et al. [ | NO | NO | NO | NO | NO | NO |
| 2012 | Cipriani et al. [ | NO | Yes | NO | NO | NO | NO |
| 2012 | Jaouni et al. [ | NO | NO | NO | NO | NO | NO |
| 2013 | Wu et al. [ | NO | NO | NO | NO | NO | NO |
| 2013 | Helgason et al. [ | NO | NO | NO | NO | NO | NO |
| 2014 | Contreras et al. [ | NO | NO | NO | NO | NO | NO |
| 2014 | Caire et al. [ | NO | NO | NO | NO | NO | NO |
| 2014 | Liu et al. [ | NO | NO | NO | NO | NO | NO |
| 2015 | Hautamaki et al. [ | NO | NO | NO | NO | NO | NO |
| 2016 | Saksens et al. [ | NO | NO | NO | NO | NO | NO |
| 2017 | Bonyadi et al. [ | NO | NO | NO | NO | NO | NO |
| 2017 | Habibi et al. [ | NO | NO | NO | NO | NO | NO |
Main Results of Pooled ORs and Analysis of C3 gene polymorphism with advanced AMD in our Meta-Analysis
| Subgroup | No. of studies | No. of patients | Allele model | Homozygote model | Heterozygote model | Dominant model | Recessive model | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Control | OR(95% CI) | P | OR(95% CI) | P | OR(95% CI) | P | OR(95% CI) | P | OR(95% CI) | P | ||
| C3 rs2230199 (Associated allele vs. Reference allele: G vs. C) | |||||||||||||
| Overall | 36 | 34,805 | 29,499 | 1.49 (1.39,1.59) | < 0.001 | 2.33 (1.98,2.74) | < 0.001 | 1.53 (1.41,1.64) | < 0.001 | 1.62 (1.51,1.74) | < 0.001 | 1.99 (1.70,2.34) | < 0.001 |
| Caucasian | 28 | 31,372 | 26,130 | 1.48 (1.38,1.59) | < 0.001 | 2.20 (1.87,2.60) | < 0.001 | 1.55 (1.43,1.67) | < 0.001 | 1.63 (1.51,1.75) | < 0.001 | 1.88 (1.59,2.21) | < 0.001 |
| East Asian | 5 | 2122 | 2388 | 1.11 (0.56,2.20) | 0.76 | – | – | 1.32 (0.91,1.93) | 0.144 | 1.49 (1.04,2.15) | 0.032 | 5.60 (1.57,19.9) | – |
| Middle East | 3 | 1311 | 981 | 1.62 (1.33,1.97) | < 0.001 | – | – | 1.07 (0.66,1.73) | 0.798 | 1.49 (0.95,2.34) | 0.085 | 25.5 (3.35,194) | – |
| C3 rs1047286 (Associated allele vs. Reference allele: T vs. C) | |||||||||||||
| Overall | 13 | 16,232 | 16,222 | 1.45 (1.37,1.54) | < 0.001 | 2.06 (1.56,2.72) | < 0.001 | 1.72 (1.51,1.96) | < 0.001 | 1.76 (1.56,2.00) | < 0.001 | 1.71 (1.30,2.24) | < 0.001 |
| Caucasian | 10 | 14,688 | 14,548 | 1.45 (1.37,1.54) | < 0.001 | 2.06 (1.56,2.72) | < 0.001 | 1.72 (1.50,1.96) | < 0.001 | 1.76 (1.55,2.00) | < 0.001 | 1.71 (1.30,2.24) | < 0.001 |
| East Asian | 3 | 1544 | 1674 | 1.75 (0.49,6.29) | 0.388 | – | – | 2.06 (0.38,11.3) | 0.404 | 2.06 (0.38,11.3) | 0.404 | – | – |
| C3 rs2230205 (Associated allele vs. Reference allele: A vs. G) | |||||||||||||
| Overall | 5 | 3302 | 2732 | 0.99 (0.89,1.11) | 0.903 | 1.04 (0.77,1.42) | 0.780 | 1.00 (0.80,1.23) | 0.967 | 1.00 (0.81,1.22) | 0.992 | 1.06 (0.81,1.37) | 0.687 |
| Caucasian | 1 | 880 | 598 | 0.90 (0.66,1.23) | 0.507 | 0.45 (0.12,1.60) | 0.215 | 0.98 (0.69,1.39) | 0.902 | 0.93 (0.66,1.32) | 0.699 | 0.45 (0.13,1.60) | 0.217 |
| East Asian | 4 | 2422 | 2134 | 1.01 (0.89,1.14) | 0.903 | 1.10 (0.80,1.51) | 0.546 | 1.01 (0.77,1.32) | 0.967 | 1.04 (0.80,1.33) | 0.787 | 1.10 (0.84,1.43) | 0.497 |
| C3 rs2250656 (Associated allele vs. Reference allele: G vs. A) | |||||||||||||
| Overall | 5 | 3278 | 2632 | 0.90 (0.75,1.08) | 0.257 | 0.76 (0.49,1.16) | 0.207 | 0.78 (0.65,0.95) | 0.014 | 0.78 (0.65,0.94) | 0.010 | 0.83 (0.55,1.27) | 0.391 |
| Caucasian | 1 | 874 | 512 | 0.82 (0.64,1.05) | 0.117 | 0.77 (0.42,1.42) | 0.407 | 0.76 (0.55,1.05) | 0.097 | 0.76 (0.56,1.04) | 0.085 | 0.87 (0.48,1.57) | 0.642 |
| East Asian | 4 | 2404 | 2120 | 0.92 (0.73,1.16) | 0.486 | 0.74 (0.41,1.37) | 0.340 | 0.80 (0.63,1.02) | 0.068 | 0.79 (0.63,1.00) | 0.052 | 0.80 (0.44,1.45) | 0.456 |
Fig. 2Evaluation of the association between C3 genetic polymorphism (rs2230199) with advanced AMD
Fig. 3Assessment of the association between C3 genetic polymorphism (rs1047286) with advanced AMD
Fig. 4Estimation of the association between C3 genetic polymorphism (rs2230205) with advanced AMD
Fig. 5Evaluation of the association between C3 genetic polymorphism (rs225065) with advanced AMD
Fig. 6Evaluation of the sensitivity analysis between C3 genetic polymorphism (rs2230199) with advanced AMD
Bias between C3 genetic polymorphism with advanced AMD in our Meta-Analysis
| Polymorphism | Number of publication | Publication bias | |
|---|---|---|---|
| Begg’s test | Egger’s test | ||
| rs2230199 | 36 | 0.653 | 0.790 |
| rs1047286 | 13 | 0.428 | 0.124 |
| rs2230205 | 5 | 1.000 | 0.905 |
| rs2250656 | 5 | 1.000 | 0.594 |