Literature DB >> 26144255

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana.

Ute Voß1, Michael H Wilson1, Kim Kenobi1, Peter D Gould2, Fiona C Robertson3, Wendy A Peer4, Mikaël Lucas5, Kamal Swarup1, Ilda Casimiro6, Tara J Holman1, Darren M Wells1, Benjamin Péret7, Tatsuaki Goh8, Hidehiro Fukaki9, T Charlie Hodgman1, Laurent Laplaze10, Karen J Halliday11, Karin Ljung12, Angus S Murphy13, Anthony J Hall2, Alex A R Webb3, Malcolm J Bennett1.   

Abstract

The endogenous circadian clock enables organisms to adapt their growth and development to environmental changes. Here we describe how the circadian clock is employed to coordinate responses to the key signal auxin during lateral root (LR) emergence. In the model plant, Arabidopsis thaliana, LRs originate from a group of stem cells deep within the root, necessitating that new organs emerge through overlying root tissues. We report that the circadian clock is rephased during LR development. Metabolite and transcript profiling revealed that the circadian clock controls the levels of auxin and auxin-related genes including the auxin response repressor IAA14 and auxin oxidase AtDAO2. Plants lacking or overexpressing core clock components exhibit LR emergence defects. We conclude that the circadian clock acts to gate auxin signalling during LR development to facilitate organ emergence.

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Year:  2015        PMID: 26144255      PMCID: PMC4506504          DOI: 10.1038/ncomms8641

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  52 in total

1.  Tissue-specific clocks in Arabidopsis show asymmetric coupling.

Authors:  Motomu Endo; Hanako Shimizu; Maria A Nohales; Takashi Araki; Steve A Kay
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

2.  ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis.

Authors:  Yoko Okushima; Hidehiro Fukaki; Makoto Onoda; Athanasios Theologis; Masao Tasaka
Journal:  Plant Cell       Date:  2007-01-26       Impact factor: 11.277

3.  pcaMethods--a bioconductor package providing PCA methods for incomplete data.

Authors:  Wolfram Stacklies; Henning Redestig; Matthias Scholz; Dirk Walther; Joachim Selbig
Journal:  Bioinformatics       Date:  2007-03-07       Impact factor: 6.937

4.  The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.

Authors:  Allan B James; José A Monreal; Gillian A Nimmo; Ciarán L Kelly; Pawel Herzyk; Gareth I Jenkins; Hugh G Nimmo
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

5.  The auxin influx carrier LAX3 promotes lateral root emergence.

Authors:  Kamal Swarup; Eva Benková; Ranjan Swarup; Ilda Casimiro; Benjamin Péret; Yaodong Yang; Geraint Parry; Erik Nielsen; Ive De Smet; Steffen Vanneste; Mitch P Levesque; David Carrier; Nicholas James; Vanessa Calvo; Karin Ljung; Eric Kramer; Rebecca Roberts; Neil Graham; Sylvestre Marillonnet; Kanu Patel; Jonathan D G Jones; Christopher G Taylor; Daniel P Schachtman; Sean May; Goran Sandberg; Philip Benfey; Jiri Friml; Ian Kerr; Tom Beeckman; Laurent Laplaze; Malcolm J Bennett
Journal:  Nat Cell Biol       Date:  2008-07-11       Impact factor: 28.824

6.  Auxin-induced degradation dynamics set the pace for lateral root development.

Authors:  Jessica M Guseman; Antje Hellmuth; Amy Lanctot; Tamar P Feldman; Britney L Moss; Eric Klavins; Luz Irina A Calderón Villalobos; Jennifer L Nemhauser
Journal:  Development       Date:  2015-01-29       Impact factor: 6.868

7.  Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?

Authors:  Stephen M Knowles; Sheen X Lu; Elaine M Tobin
Journal:  J Biol Rhythms       Date:  2008-12       Impact factor: 3.182

8.  Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis.

Authors:  Esther Yakir; Dror Hilman; Ido Kron; Miriam Hassidim; Naomi Melamed-Book; Rachel M Green
Journal:  Plant Physiol       Date:  2009-04-01       Impact factor: 8.340

9.  Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones.

Authors:  Julien Lavenus; Tatsuaki Goh; Soazig Guyomarc'h; Kristine Hill; Mikael Lucas; Ute Voß; Kim Kenobi; Michael H Wilson; Etienne Farcot; Gretchen Hagen; Thomas J Guilfoyle; Hidehiro Fukaki; Laurent Laplaze; Malcolm J Bennett
Journal:  Plant Cell       Date:  2015-05-05       Impact factor: 11.277

10.  The circadian clock regulates auxin signaling and responses in Arabidopsis.

Authors:  Michael F Covington; Stacey L Harmer
Journal:  PLoS Biol       Date:  2007-08       Impact factor: 8.029

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  42 in total

Review 1.  Genetic control of root growth: from genes to networks.

Authors:  Radka Slovak; Takehiko Ogura; Santosh B Satbhai; Daniela Ristova; Wolfgang Busch
Journal:  Ann Bot       Date:  2015-11-11       Impact factor: 4.357

2.  Formation of the Stomatal Outer Cuticular Ledge Requires a Guard Cell Wall Proline-Rich Protein.

Authors:  Lee Hunt; Samuel Amsbury; Alice Baillie; Mahsa Movahedi; Alice Mitchell; Mana Afsharinafar; Kamal Swarup; Thomas Denyer; Jamie K Hobbs; Ranjan Swarup; Andrew J Fleming; Julie E Gray
Journal:  Plant Physiol       Date:  2017-02-02       Impact factor: 8.340

3.  Periodic Lateral Root Priming: What Makes It Tick?

Authors:  Marta Laskowski; Kirsten H Ten Tusscher
Journal:  Plant Cell       Date:  2017-02-21       Impact factor: 11.277

4.  Dependence and independence of the root clock on the shoot clock in Arabidopsis.

Authors:  Hong Gil Lee; Pil Joon Seo
Journal:  Genes Genomics       Date:  2018-06-13       Impact factor: 1.839

5.  Save Time and Fish for the Clock.

Authors:  Charlotte M M Gommers
Journal:  Plant Physiol       Date:  2018-07       Impact factor: 8.340

6.  Root hydrotropism and thigmotropism in Arabidopsis thaliana are differentially controlled by redox status.

Authors:  Georgina Ponce; Gabriel Corkidi; Delfeena Eapen; Fernando Lledías; Luis Cárdenas; Gladys Cassab
Journal:  Plant Signal Behav       Date:  2017-04-03

7.  SnRK2 Protein Kinases and mRNA Decapping Machinery Control Root Development and Response to Salt.

Authors:  Dorota Kawa; A Jessica Meyer; Henk L Dekker; Ahmed M Abd-El-Haliem; Kris Gevaert; Eveline Van De Slijke; Justyna Maszkowska; Maria Bucholc; Grażyna Dobrowolska; Geert De Jaeger; Robert C Schuurink; Michel A Haring; Christa Testerink
Journal:  Plant Physiol       Date:  2019-09-30       Impact factor: 8.340

8.  The Evening Complex Establishes Repressive Chromatin Domains Via H2A.Z Deposition.

Authors:  Meixuezi Tong; Kyounghee Lee; Daphne Ezer; Sandra Cortijo; Jaehoon Jung; Varodom Charoensawan; Mathew S Box; Katja E Jaeger; Nozomu Takahashi; Paloma Mas; Philip A Wigge; Pil Joon Seo
Journal:  Plant Physiol       Date:  2019-11-11       Impact factor: 8.340

9.  A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.

Authors:  Zheng Li; Nooshin Omranian; Lutz Neumetzler; Ting Wang; Thomas Herter; Bjoern Usadel; Taku Demura; Patrick Giavalisco; Zoran Nikoloski; Staffan Persson
Journal:  Plant Physiol       Date:  2016-08-26       Impact factor: 8.340

10.  DAO1 catalyzes temporal and tissue-specific oxidative inactivation of auxin in Arabidopsis thaliana.

Authors:  Jun Zhang; Jinshan Ella Lin; Chinchu Harris; Fernanda Campos Mastrotti Pereira; Fan Wu; Joshua J Blakeslee; Wendy Ann Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-20       Impact factor: 11.205

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