Literature DB >> 26143202

XNAT Central: Open sourcing imaging research data.

Rick Herrick1, William Horton2, Timothy Olsen3, Michael McKay2, Kevin A Archie2, Daniel S Marcus2.   

Abstract

XNAT Central is a publicly accessible medical imaging data repository based on the XNAT open-source imaging informatics platform. It hosts a wide variety of research imaging data sets. The primary motivation for creating XNAT Central was to provide a central repository to host and provide access to a wide variety of neuroimaging data. In this capacity, XNAT Central hosts a number of data sets from research labs and investigative efforts from around the world, including the OASIS Brains imaging studies, the NUSDAST study of schizophrenia, and more. Over time, XNAT Central has expanded to include imaging data from many different fields of research, including oncology, orthopedics, cardiology, and animal studies, but continues to emphasize neuroimaging data. Through the use of XNAT's DICOM metadata extraction capabilities, XNAT Central provides a searchable repository of imaging data that can be referenced by groups, labs, or individuals working in many different areas of research. The future development of XNAT Central will be geared towards greater ease of use as a reference library of heterogeneous neuroimaging data and associated synthetic data. It will also become a tool for making data available supporting published research and academic articles.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Data sharing; Neuroinformatics databases; Open access; Open source; XNAT; XNAT Central

Mesh:

Year:  2015        PMID: 26143202      PMCID: PMC4965359          DOI: 10.1016/j.neuroimage.2015.06.076

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  11 in total

1.  DicomBrowser: software for viewing and modifying DICOM metadata.

Authors:  Kevin A Archie; Daniel S Marcus
Journal:  J Digit Imaging       Date:  2012-10       Impact factor: 4.056

2.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

3.  Early alterations in functional connectivity and white matter structure in a transgenic mouse model of cerebral amyloidosis.

Authors:  Joanes Grandjean; Aileen Schroeter; Pan He; Matteo Tanadini; Ruth Keist; Dimitrije Krstic; Uwe Konietzko; Jan Klohs; Roger M Nitsch; Markus Rudin
Journal:  J Neurosci       Date:  2014-10-08       Impact factor: 6.167

4.  Open Access Series of Imaging Studies (OASIS): cross-sectional MRI data in young, middle aged, nondemented, and demented older adults.

Authors:  Daniel S Marcus; Tracy H Wang; Jamie Parker; John G Csernansky; John C Morris; Randy L Buckner
Journal:  J Cogn Neurosci       Date:  2007-09       Impact factor: 3.225

5.  Open access series of imaging studies: longitudinal MRI data in nondemented and demented older adults.

Authors:  Daniel S Marcus; Anthony F Fotenos; John G Csernansky; John C Morris; Randy L Buckner
Journal:  J Cogn Neurosci       Date:  2010-12       Impact factor: 3.225

6.  Data sharing in neuroimaging research.

Authors:  Jean-Baptiste Poline; Janis L Breeze; Satrajit Ghosh; Krzysztof Gorgolewski; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Karl G Helmer; David B Keator; Daniel S Marcus; Russell A Poldrack; Yannick Schwartz; John Ashburner; David N Kennedy
Journal:  Front Neuroinform       Date:  2012-04-05       Impact factor: 4.081

7.  PyXNAT: XNAT in Python.

Authors:  Yannick Schwartz; Alexis Barbot; Benjamin Thyreau; Vincent Frouin; Gaël Varoquaux; Aditya Siram; Daniel S Marcus; Jean-Baptiste Poline
Journal:  Front Neuroinform       Date:  2012-05-24       Impact factor: 4.081

8.  Northwestern University Schizophrenia Data and Software Tool (NUSDAST).

Authors:  Lei Wang; Alex Kogan; Derin Cobia; Kathryn Alpert; Anthony Kolasny; Michael I Miller; Daniel Marcus
Journal:  Front Neuroinform       Date:  2013-11-07       Impact factor: 4.081

9.  Toward open sharing of task-based fMRI data: the OpenfMRI project.

Authors:  Russell A Poldrack; Deanna M Barch; Jason P Mitchell; Tor D Wager; Anthony D Wagner; Joseph T Devlin; Chad Cumba; Oluwasanmi Koyejo; Michael P Milham
Journal:  Front Neuroinform       Date:  2013-07-08       Impact factor: 4.081

10.  Data dictionary services in XNAT and the Human Connectome Project.

Authors:  Rick Herrick; Michael McKay; Timothy Olsen; William Horton; Mark Florida; Charles J Moore; Daniel S Marcus
Journal:  Front Neuroinform       Date:  2014-07-03       Impact factor: 4.081

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  20 in total

1.  Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.

Authors:  David N Kennedy; Sanu A Abraham; Julianna F Bates; Albert Crowley; Satrajit Ghosh; Tom Gillespie; Mathias Goncalves; Jeffrey S Grethe; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Steven M Hodge; Dorota Jarecka; Jakub Kaczmarzyk; David B Keator; Kyle Meyer; Maryann E Martone; Smruti Padhy; Jean-Baptiste Poline; Nina Preuss; Troy Sincomb; Matt Travers
Journal:  Front Neuroinform       Date:  2019-02-07       Impact factor: 4.081

2.  INCloud: integrated neuroimaging cloud for data collection, management, analysis and clinical translations.

Authors:  Qingfeng Li; Lijuan Jiang; Kaini Qiao; Yang Hu; Bing Chen; Xiaochen Zhang; Yue Ding; Zhi Yang; Chunbo Li
Journal:  Gen Psychiatr       Date:  2021-12-23

3.  Web-Based Application for Biomedical Image Registry, Analysis, and Translation (BiRAT).

Authors:  Rahul Pemmaraju; Robert Minahan; Elise Wang; Kornel Schadl; Heike Daldrup-Link; Frezghi Habte
Journal:  Tomography       Date:  2022-05-30

Review 4.  Federated Analysis of Neuroimaging Data: A Review of the Field.

Authors:  Kelly Rootes-Murdy; Harshvardhan Gazula; Eric Verner; Ross Kelly; Thomas DeRamus; Sergey Plis; Anand Sarwate; Jessica Turner; Vince Calhoun
Journal:  Neuroinformatics       Date:  2021-11-22

5.  To share or not to share? Expected pros and cons of data sharing in radiological research.

Authors:  Francesco Sardanelli; Marco Alì; Myriam G Hunink; Nehmat Houssami; Luca M Sconfienza; Giovanni Di Leo
Journal:  Eur Radiol       Date:  2018-01-18       Impact factor: 5.315

6.  DICOM Image ANalysis and Archive (DIANA): an Open-Source System for Clinical AI Applications.

Authors:  Thomas Yi; Ian Pan; Scott Collins; Fiona Chen; Robert Cueto; Ben Hsieh; Celina Hsieh; Jessica L Smith; Li Yang; Wei-Hua Liao; Lisa H Merck; Harrison Bai; Derek Merck
Journal:  J Digit Imaging       Date:  2021-11-02       Impact factor: 4.903

7.  FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.

Authors:  Tinashe M Tapera; Matthew Cieslak; Max Bertolero; Azeez Adebimpe; Geoffrey K Aguirre; Ellyn R Butler; Philip A Cook; Diego Davila; Mark A Elliott; Sophia Linguiti; Kristin Murtha; William Tackett; John A Detre; Theodore D Satterthwaite
Journal:  Front Neuroinform       Date:  2021-06-22       Impact factor: 4.081

8.  Metamaterial-based transmit and receive system for whole-body magnetic resonance imaging at ultra-high magnetic fields.

Authors:  Tim Herrmann; Thorsten Liebig; Johannes Mallow; Christian Bruns; Jörg Stadler; Judith Mylius; Michael Brosch; Jan Taro Svedja; Zhichao Chen; Andreas Rennings; Henning Scheich; Markus Plaumann; Marcus J B Hauser; Johannes Bernarding; Daniel Erni
Journal:  PLoS One       Date:  2018-01-25       Impact factor: 3.240

Review 9.  What incentives increase data sharing in health and medical research? A systematic review.

Authors:  Anisa Rowhani-Farid; Michelle Allen; Adrian G Barnett
Journal:  Res Integr Peer Rev       Date:  2017-05-05

10.  MIRACUM: Medical Informatics in Research and Care in University Medicine.

Authors:  Hans-Ulrich Prokosch; Till Acker; Johannes Bernarding; Harald Binder; Martin Boeker; Melanie Boerries; Philipp Daumke; Thomas Ganslandt; Jürgen Hesser; Gunther Höning; Michael Neumaier; Kurt Marquardt; Harald Renz; Hermann-Josef Rothkötter; Carmen Schade-Brittinger; Paul Schmücker; Jürgen Schüttler; Martin Sedlmayr; Hubert Serve; Keywan Sohrabi; Holger Storf
Journal:  Methods Inf Med       Date:  2018-07-17       Impact factor: 2.176

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