Literature DB >> 26138992

Translational Genomics in Low- and Middle-Income Countries: Opportunities and Challenges.

Fasil Tekola-Ayele1, Charles N Rotimi.   

Abstract

Translation of genomic discoveries into patient care is slowly becoming a reality in developed economies around the world. In contrast, low- and middle-income countries (LMIC) have participated minimally in genomic research for several reasons including the lack of coherent national policies, the limited number of well-trained genomic scientists, poor research infrastructure, and local economic and cultural challenges. Recent initiatives such as the Human Heredity and Health in Africa (H3Africa), the Qatar Genome Project, and the Mexico National Institute of Genomic Medicine (INMEGEN) that aim to address these problems through capacity building and empowerment of local researchers have sparked a paradigm shift. In this short communication, we describe experiences of small-scale medical genetics and translational genomic research programs in LMIC. The lessons drawn from these programs drive home the importance of addressing resource, policy, and sociocultural dynamics to realize the promise of precision medicine driven by genomic science globally. By echoing lessons from a bench-to-community translational genomic research, we advocate that large-scale genomic research projects can be successfully linked with health care programs. To harness the benefits of genomics-led health care, LMIC governments should begin to develop national genomics policies that will address human and technology capacity development within the context of their national economic and sociocultural uniqueness. These policies should encourage international collaboration and promote the link between the public health program and genomics researchers. Finally, we highlight the potential catalytic roles of the global community to foster translational genomics in LMIC.
© 2015 S. Karger AG, Basel.

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Year:  2015        PMID: 26138992      PMCID: PMC4514540          DOI: 10.1159/000433518

Source DB:  PubMed          Journal:  Public Health Genomics        ISSN: 1662-4246            Impact factor:   2.000


  41 in total

1.  Whole-genome resequencing in pharmacogenomics: moving away from past disparities to globally representative applications.

Authors:  Britt I Drögemöller; Galen E B Wright; Dana J H Niehaus; Robin A Emsley; Louise Warnich
Journal:  Pharmacogenomics       Date:  2011-12       Impact factor: 2.533

2.  Pharmacogenomics, ancestry and clinical decision making for global populations.

Authors:  E Ramos; A Doumatey; A G Elkahloun; D Shriner; H Huang; G Chen; J Zhou; H McLeod; A Adeyemo; C N Rotimi
Journal:  Pharmacogenomics J       Date:  2013-07-09       Impact factor: 3.550

3.  GSTM1 and GSTP1 and respiratory health in asthmatic children exposed to ozone.

Authors:  I Romieu; M Ramirez-Aguilar; J J Sienra-Monge; H Moreno-Macías; B E del Rio-Navarro; G David; J Marzec; M Hernández-Avila; S London
Journal:  Eur Respir J       Date:  2006-07-26       Impact factor: 16.671

4.  A path to eradication of hepatitis C in low- and middle-income countries.

Authors:  Camilla S Graham; Tracy Swan
Journal:  Antiviral Res       Date:  2015-01-20       Impact factor: 5.970

5.  Prospective study of zinc intake and risk of type 2 diabetes in women.

Authors:  Qi Sun; Rob M van Dam; Walter C Willett; Frank B Hu
Journal:  Diabetes Care       Date:  2009-01-26       Impact factor: 17.152

Review 6.  Pharmacogenetics of hepatitis C: transition from interferon-based therapies to direct-acting antiviral agents.

Authors:  Sanaa M Kamal
Journal:  Hepat Med       Date:  2014-06-24

7.  The African Genome Variation Project shapes medical genetics in Africa.

Authors:  Deepti Gurdasani; Tommy Carstensen; Fasil Tekola-Ayele; Luca Pagani; Ioanna Tachmazidou; Konstantinos Hatzikotoulas; Savita Karthikeyan; Louise Iles; Martin O Pollard; Ananyo Choudhury; Graham R S Ritchie; Yali Xue; Jennifer Asimit; Rebecca N Nsubuga; Elizabeth H Young; Cristina Pomilla; Katja Kivinen; Kirk Rockett; Anatoli Kamali; Ayo P Doumatey; Gershim Asiki; Janet Seeley; Fatoumatta Sisay-Joof; Muminatou Jallow; Stephen Tollman; Ephrem Mekonnen; Rosemary Ekong; Tamiru Oljira; Neil Bradman; Kalifa Bojang; Michele Ramsay; Adebowale Adeyemo; Endashaw Bekele; Ayesha Motala; Shane A Norris; Fraser Pirie; Pontiano Kaleebu; Dominic Kwiatkowski; Chris Tyler-Smith; Charles Rotimi; Eleftheria Zeggini; Manjinder S Sandhu
Journal:  Nature       Date:  2014-12-03       Impact factor: 49.962

8.  Global epidemiology of sickle haemoglobin in neonates: a contemporary geostatistical model-based map and population estimates.

Authors:  Frédéric B Piel; Anand P Patil; Rosalind E Howes; Oscar A Nyangiri; Peter W Gething; Mewahyu Dewi; William H Temperley; Thomas N Williams; David J Weatherall; Simon I Hay
Journal:  Lancet       Date:  2012-10-25       Impact factor: 79.321

9.  Genetic variation in IL28B and spontaneous clearance of hepatitis C virus.

Authors:  David L Thomas; Chloe L Thio; Maureen P Martin; Ying Qi; Dongliang Ge; Colm O'Huigin; Judith Kidd; Kenneth Kidd; Salim I Khakoo; Graeme Alexander; James J Goedert; Gregory D Kirk; Sharyne M Donfield; Hugo R Rosen; Leslie H Tobler; Michael P Busch; John G McHutchison; David B Goldstein; Mary Carrington
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

10.  Research capacity. Enabling the genomic revolution in Africa.

Authors:  Charles Rotimi; Akin Abayomi; Alash'le Abimiku; Victoria May Adabayeri; Clement Adebamowo; Ezekiel Adebiyi; Adebowale D Ademola; Adebowale Adeyemo; Dwomoa Adu; Dissou Affolabi; Godfred Agongo; Samuel Ajayi; Sally Akarolo-Anthony; Rufus Akinyemi; Albert Akpalu; Marianne Alberts; Orlando Alonso Betancourt; Ahmed Mansour Alzohairy; Gobena Ameni; Olukemi Amodu; Gabriel Anabwani; Kristian Andersen; Fatiu Arogundade; Oyedunni Arulogun; Danny Asogun; Rasheed Bakare; Naby Balde; Mary Lynn Baniecki; Christine Beiswanger; Alia Benkahla; Lara Bethke; Micheal Boehnke; Vincent Boima; James Brandful; Andrew I Brooks; Frank C Brosius; Chester Brown; Bruno Bucheton; David T Burke; Barrington G Burnett; Stacy Carrington-Lawrence; Nadia Carstens; John Chisi; Alan Christoffels; Richard Cooper; Heather Cordell; Nigel Crowther; Talishiea Croxton; Jantina de Vries; Leslie Derr; Peter Donkor; Seydou Doumbia; Audrey Duncanson; Ivy Ekem; Ahmed El Sayed; Mark E Engel; John C K Enyaru; Dean Everett; Faisal M Fadlelmola; Eyitayo Fakunle; Kenneth H Fischbeck; Anne Fischer; Onikepe Folarin; Junaid Gamieldien; Robert F Garry; Simani Gaseitsiwe; Rasheed Gbadegesin; Anita Ghansah; Maria Giovanni; Parham Goesbeck; F Xavier Gomez-Olive; Donald S Grant; Ravnit Grewal; Mark Guyer; Neil A Hanchard; Christian T Happi; Scott Hazelhurst; Branwen J Hennig; Christiane Hertz-; Winston Hide; Friedhelm Hilderbrandt; Christopher Hugo-Hamman; Muntaser E Ibrahim; Regina James; Yasmina Jaufeerally-Fakim; Carolyn Jenkins; Ute Jentsch; Pan-Pan Jiang; Moses Joloba; Victor Jongeneel; Fourie Joubert; Mukthar Kader; Kathleen Kahn; Pontiano Kaleebu; Saidi H Kapiga; Samar Kamal Kassim; Ishmael Kasvosve; Jonathan Kayondo; Bernard Keavney; Adeodata Kekitiinwa; Sheik Humarr Khan; Paul Kimmel; Mary-Claire King; Robert Kleta; Mathurin Koffi; Jeffrey Kopp; Matthias Kretzler; Judit Kumuthini; Samuel Kyobe; Catherine Kyobutungi; Daniel T Lackland; Karen A Lacourciere; Guida Landouré; Rita Lawlor; Thomas Lehner; Maia Lesosky; Naomi Levitt; Katherine Littler; Zane Lombard; Jeanne F Loring; Sylvester Lyantagaye; Annette Macleod; Ebony B Madden; Chengetai R Mahomva; Julie Makani; Manmak Mamven; Marape Marape; Graeme Mardon; Patricia Marshall; Darren P Martin; Daniel Masiga; Robin Mason; Michael Mate-Kole; Enock Matovu; Mary Mayige; Bongani M Mayosi; Jean Claude Mbanya; Sheryl A McCurdy; Mark I McCarthy; Helen McIlleron; S O Mc'Ligeyo; Corrine Merle; Ana Olga Mocumbi; Charles Mondo; John V Moran; Ayesha Motala; Marva Moxey-Mims; Wata Sununguko Mpoloka; Chisomo L Msefula; Thuli Mthiyane; Nicola Mulder; Gebregziab her Mulugeta; Dieuodonne Mumba; John Musuku; Mo Nagdee; Oyekanmi Nash; Daouda Ndiaye; Anh Quynh Nguyen; Mark Nicol; Oathokwa Nkomazana; Shane Norris; Betty Nsangi; Alexander Nyarko; Moffat Nyirenda; Eileen Obe; Reginald Obiakor; Abraham Oduro; Solomon F Ofori-Acquah; Okechukwu Ogah; Stephen Ogendo; Kwaku Ohene-Frempong; Akinlolu Ojo; Timothy Olanrewaju; John Oli; Charlotte Osafo; Odile Ouwe Missi Oukem-Boyer; Bruce Ovbiagele; Andrew Owen; Mayowa Ojo Owolabi; Lukman Owolabi; Ellis Owusu-Dabo; Guillaume Pare; Rulan Parekh; Hugh G Patterton; Margaret B Penno; Jane Peterson; Rembert Pieper; Jacob Plange-Rhule; Martin Pollak; Julia Puzak; Rajkumar S Ramesar; Michele Ramsay; Rebekah Rasooly; Shiksha Reddy; Pardis C Sabeti; Kwamena Sagoe; Tunde Salako; Oumar Samassékou; Manjinder S Sandhu; Osman Sankoh; Fred Stephen Sarfo; Marie Sarr; Gasnat Shaboodien; Issa Sidibe; Gustave Simo; Martin Simuunza; Liam Smeeth; Eugene Sobngwi; Himla Soodyall; Hermann Sorgho; Oumou Sow Bah; Sudha Srinivasan; Dan J Stein; Ezra S Susser; Carmen Swanepoel; Godfred Tangwa; Andrew Tareila; Ozlem Tastan Bishop; Bamidele Tayo; Nicki Tiffin; Halidou Tinto; Ekaete Tobin; Stephen Meir Tollman; Mahamadou Traoré; Marsha J Treadwell; Jennifer Troyer; Masego Tsimako-Johnstone; Vincent Tukei; Ifeoma Ulasi; Nzovu Ulenga; Beverley van Rooyen; Ablo Prudence Wachinou; Salina P Waddy; Alisha Wade; Misaki Wayengera; James Whitworth; Louise Wideroff; Cheryl A Winkler; Sarah Winnicki; Ambroise Wonkam; Mengistu Yewondwos; Tadase sen; Nathan Yozwiak; Heather Zar
Journal:  Science       Date:  2014-06-20       Impact factor: 47.728

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  24 in total

Review 1.  Toward a Global Roadmap for Precision Medicine in Psychiatry: Challenges and Opportunities.

Authors:  Shareefa Dalvie; Nastassja Koen; Nathaniel McGregor; Kevin O'Connell; Louise Warnich; Raj Ramesar; Caroline M Nievergelt; Dan J Stein
Journal:  OMICS       Date:  2016-09-16

Review 2.  African genetic diversity and adaptation inform a precision medicine agenda.

Authors:  Luisa Pereira; Leon Mutesa; Paulina Tindana; Michèle Ramsay
Journal:  Nat Rev Genet       Date:  2021-01-11       Impact factor: 53.242

Review 3.  Scientific considerations for global drug development.

Authors:  Jennifer L Wilson; Kit Wun Kathy Cheung; Lawrence Lin; Elizabeth A E Green; Analia I Porrás; Ling Zou; David Mukanga; Paul A Akpa; Delese Mimi Darko; Rae Yuan; Sheng Ding; Wiltshire C N Johnson; Howard A Lee; Emer Cooke; Carl C Peck; Steven E Kern; Dan Hartman; Yoshikazu Hayashi; Peter W Marks; Russ B Altman; Murray M Lumpkin; Kathleen M Giacomini; Terrence F Blaschke
Journal:  Sci Transl Med       Date:  2020-07-29       Impact factor: 17.956

Review 4.  Genomic medicine for kidney disease.

Authors:  Emily E Groopman; Hila Milo Rasouly; Ali G Gharavi
Journal:  Nat Rev Nephrol       Date:  2018-01-08       Impact factor: 28.314

5.  Evaluating utility and feasibility of mismatch repair testing of colorectal cancer patients in a low-middle-income country.

Authors:  Inas Elsayed; Robert Geraghty; Salwa O Mekki; Ahmed A Mohamedani; Susan Ahern; Omer E H Salim; Balgis B M Khalil; Sawsan Abdelrahim; Suliman H Suliman; Moawia M A Elhassan; Salah O Salah; Mohamed E Salih; Abubakr H Widatalla; Osman S Abdelhamed; Xiaosheng Wang; Éanna J Ryan; Des Winter; Salih Bakhiet; Kieran Sheahan
Journal:  Sci Rep       Date:  2022-06-29       Impact factor: 4.996

6.  The Global Landscape of Nursing and Genomics.

Authors:  Kathleen A Calzone; Maggie Kirk; Emma Tonkin; Laurie Badzek; Caroline Benjamin; Anna Middleton
Journal:  J Nurs Scholarsh       Date:  2018-04-02       Impact factor: 3.176

Review 7.  An Expert Review of Pharmacogenomics of Sickle Cell Disease Therapeutics: Not Yet Ready for Global Precision Medicine.

Authors:  Khuthala Mnika; Gift D Pule; Collet Dandara; Ambroise Wonkam
Journal:  OMICS       Date:  2016-09-16

8.  Genomic diagnostics within a medically underserved population: efficacy and implications.

Authors:  Kevin A Strauss; Claudia Gonzaga-Jauregui; Karlla W Brigatti; Katie B Williams; Alejandra K King; Cristopher Van Hout; Donna L Robinson; Millie Young; Kavita Praveen; Adam D Heaps; Mindy Kuebler; Aris Baras; Jeffrey G Reid; John D Overton; Frederick E Dewey; Robert N Jinks; Ian Finnegan; Scott J Mellis; Alan R Shuldiner; Erik G Puffenberger
Journal:  Genet Med       Date:  2017-07-20       Impact factor: 8.822

9.  Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries.

Authors:  Emmanuel Rivière; Tim H Heupink; Nabila Ismail; Anzaan Dippenaar; Charlene Clarke; Gemeda Abebe; Peter Heusden; Rob Warren; Conor J Meehan; Annelies Van Rie
Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

10.  Interpretations of education about gene-environment influences on health in rural Ethiopia: the context of a neglected tropical disease.

Authors:  Abebayehu Tora; Desta Ayode; Getnet Tadele; David Farrell; Gail Davey; Colleen M McBride
Journal:  Int Health       Date:  2016-04-24       Impact factor: 2.473

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