Literature DB >> 26130594

Influence of Fluorination on the Conformational Properties and Hydrogen-Bond Acidity of Benzyl Alcohol Derivatives.

Elena Bogdan1, Guillaume Compain2, Lewis Mtashobya2, Jean-Yves Le Questel1, François Besseau1, Nicolas Galland1, Bruno Linclau3, Jérôme Graton4.   

Abstract

The effect of fluorination on the conformational and hydrogen-bond (HB)-donating properties of a series of benzyl alcohols has been investigated experimentally by IR spectroscopy and theoretically with quantum chemical methods (ab initio (MP2) and DFT (MPWB1K)). It was found that o-fluorination generally resulted in an increase in the HB acidity of the hydroxyl group, whereas a decrease was observed upon o,o'-difluorination. Computational analysis showed that the conformational landscapes of the title compounds are strongly influenced by the presence of o-fluorine atoms. Intramolecular interaction descriptors based on AIM, NCI and NBO analyses reveal that, in addition to an intramolecular OH⋅⋅⋅F interaction, secondary CH⋅⋅⋅F and/or CH⋅⋅⋅O interactions also occur, contributing to the stabilisation of the various conformations, and influencing the overall HB properties of the alcohol group. The benzyl alcohol HB-donating capacity trends are properly described by an electrostatic potential based descriptor calculated at the MPWB1K/6-31+G(d,p) level of theory, provided solvation effects are taken into account for these flexible HB donors.
© 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

Entities:  

Keywords:  benzylic alcohols; conformation analysis; fluorine; hydrogen-bond acidity

Year:  2015        PMID: 26130594      PMCID: PMC4531824          DOI: 10.1002/chem.201501171

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


Introduction

The fluorination of organic compounds to modify their properties is having a major impact in many chemistry-related fields such as medicinal chemistry,[1] agrochemistry,[2] materials science[3] and crystal engineering.[4] The high fluorine electronegativity, with the resulting highly polarised C–F bond and nonpolarisable fluorine lone pairs, is at the origin of a multitude of effects resulting from the introduction of one or more fluorine atoms.[5] Fundamental studies aimed at improving our understanding of the effects of fluorination in organic compounds are still ongoing. Significant and sometimes unexpected consequences of fluorination on the physical and chemical properties of adjacent functional groups[6] or regarding C–F mediated inter- and intramolecular interactions, continue to be described.[7] Organofluorine chemists are especially captivated by the ability of fluorine to behave as a hydrogen-bond (HB) acceptor,[8] and it is now accepted, through key contributions from Vulpetti and Dalvit[7c] as well as Laurence and co-workers,[9] that organofluorine can act as a weak HB acceptor. Furthermore, seminal works by Vasella, Bernet and Gouverneur have highlighted OH⋅⋅⋅F intramolecular hydrogen bonds (IMHBs) by using NMR techniques.[10] Recently, we have experimentally determined HB-donating capacities (or HB acidities) of fluorohydrins through the adaptation of an established[11] procedure by using FTIR spectroscopy.[6c] The insights revealed in this study, for example the influence of OH⋅⋅⋅F IMHB interactions on alcohol hydrogen-bond properties, pointed out the need for comprehensive investigations on a wide range of fluorinated compounds to probe the effects of fluorine on HB interactions in diverse chemical environments, and to optimise HB property prediction tools. Herein we report on the influence of ortho-fluorination on the hydrogen-bond-donating capacity of benzyl alcohols through a combined experimental and theoretical approach. The experimental HB acidities (pKAHY) are presented and rationalised by quantum chemistry calculations, including detailed conformational analysis, to allow insights to be gained on the influence of the fluorine atom(s) on the conformational features of substituted benzyl alcohols. Atoms In Molecules (AIM),[12] Noncovalent Interaction (NCI)[13] and Natural Bond Orbital (NBO)[14] analyses have been performed to provide an accurate description of the different IMHB interactions occurring in the various compounds. In the final part of this work, we show the feasibility of accurately predicting the HB acidity values of the substrates involved by using an electrostatic-based descriptor (Vα(r))[15] computed for the various molecules. Benzyl alcohols are common building blocks of drugs (e.g., antimuscarinic drugs (fesoterodine), neuroprotective agents, anticonvulsant agents (gastrodin)), and their conformational preferences are still a matter of debate.[16] An interesting effect of fluorine substitution has been reported for ring-hydroxylated biogenic amines such as norepinephrine (Figure 1). Depending on the position of the fluorine, the analogues were shown to have markedly different agonist properties.[17] Intramolecular hydrogen-bonding effects and/or dipole-dipole repulsions between the COH and CF moieties have been considered as factors that could result in conformational preferences that are favourable for binding to α- or β-adrenergic receptors.[17-18] A more recent explanation involves preferential orientation of the C–F bond of both 2F-NE and 6F-NE to an asparagine residue, resulting in a different presentation of the aromatic alcohol groups.[19]
Figure 1

Fluorinated norepinephrine analogues with different agonist activities.

Fluorinated norepinephrine analogues with different agonist activities.

Results and Discussion

Synthesis

The synthesis of substrates 1 b, 2 b, 6 b and 6 c (Figure 2) is detailed in the Supporting Information. All other compounds were purchased. Compounds 4 c, 5 c, 9 a and 9 b were only investigated computationally.
Figure 2

Chemical structures of the benzyl alcohol derivatives under study.

Chemical structures of the benzyl alcohol derivatives under study.

Conformational IR Analysis of the Hydroxyl Stretching Region

The experimental data set investigated in this study is composed of eight reference benzyl alcohols 1 a–8 a, eight monofluorinated 2-fluorobenzyl alcohols 1 b–8 b and five difluorinated 2,6-difluorobenzyl alcohol derivatives 1 c–3 c, 6 c and 7 c. The νOH bands of the title compounds at 25 °C in dilute CCl4 solutions are shown in Figure 3.
Figure 3

IR spectra in the νOH stretching region of A) benzyl alcohols, B) 2-fluorobenzyl alcohols and C) 2,6-difluorobenzyl alcohols.

IR spectra in the νOH stretching region of A) benzyl alcohols, B) 2-fluorobenzyl alcohols and C) 2,6-difluorobenzyl alcohols. For most of the nonfluorinated benzyl alcohols, the νOH region is rather complex, with two bands separated by ca. 20 cm−1, which is indicative of different conformations. A deconvolution of the absorption spectra in this region has therefore been carried out; the resulting νOH stretching frequencies are reported in Table 1. For series a, without any ortho substituent, the low-frequency band νOH(2) peaked at 3616 cm−1 irrespective of the nature of the meta substituent. The position of the νOH(1) absorption band is measured at a slightly higher frequency, 3629 cm−1 for 1 a and 2 a , and 3635 cm−1 for 3 a–6 a (Figure 3 A, Table 1). However, their relative intensity is dependent on the substitution: whereas νOH(2) is shown to be the main band, the contribution of νOH(1) increases with increasing electron-withdrawing effect of the meta substituent. With the nitro-derivative 6 a, the band at 3635 cm−1 shows the largest contribution. Only one conformer absorbing at low frequency (3617 cm−1) is observed in the presence of a methyl group in the α-position (7 a), whereas when the methyl group is in the o-position (8 a) (not shown), the band profile is similar to that of 1 a.
Table 1

Experimental spectroscopic features, νOH, εOH and ΔνOH, and HB acidity properties, pKAHY and ΔGAHY, of benzyl alcohols under study

EntryνOH(1) [cm−1]νOH(2) [cm−1]εOH [L mol−1 cm−1]pKAHYΔGAHY [kJ mol−1]ΔνOH [cm−1][a]
1 a36293616731.03−5.9193
1 b36393624751.16−6.6207
1 c[b]36271170.94−5.4222
2 a36293616761.06−6.1197
2 b36393623741.21−6.9208
2 c[b]36271080.86−4.9228
3 a36353616721.32−7.5205
3 b36383623661.48−8.4224
3 c[b]36261071.21−6.9229
4 a36353616701.46−8.3231
4 b36383622781.70−9.7241
5 a36353616701.48−8.4213
5 b36383622771.67−9.5240
6 a36353616731.79−10.2245
6 b36363621881.98−11.3259
6 c[b]36261231.69−9.6276
7 a[b]3617860.96−5.5193
7 b36303619801.05−6.0201
7 c[b]36221150.70−4.0206
8 a36373619730.99−5.7197
8 b[b]36241100.94−5.4215

[a] Calculated from the νOH(2) value. [b] Not observed.

Experimental spectroscopic features, νOH, εOH and ΔνOH, and HB acidity properties, pKAHY and ΔGAHY, of benzyl alcohols under study [a] Calculated from the νOH(2) value. [b] Not observed. Within series b (Figure 3 B), the νOH bands are slightly blueshifted by ca. 3–10 cm−1, and are less resolved. The νOH(1) contribution appears to be higher than in series a. With the 2,6-difluoro series c (Figure 3 C), only one stretching νOH band is observed and its half-width is significantly smaller than in compounds a and b. This feature might indicate that the conformational flexibility around the hydroxyl moiety is lost in these derivatives, which would reduce the number of existing conformers with respect to series a and b. Similarly, compound 8 b, having two o-substituents, exhibits a νOH stretching band with a small half-width (not shown), closer to the profile of compounds of series c than to the series b.

Computational Analysis

Introduction: Conformational Studies

The conformational properties of benzyl alcohol, described either through experimental or theoretical studies, are still a matter of debate, whereas they seem to be more established for benzylic compounds, C6H5CH2X. When X is an alkyl group or a halide, the C-C-C-X dihedral angle was shown to be 90°, with the C–X bond in a plane orthogonal to the benzene ring.[20] This perpendicular conformation minimises steric repulsive effects between the -CH2X group and the phenyl ring. If the X group contains a triple bond (ethynyl or cyanide), the dihedral angle is near 0°, with the C≡C bond lying in the plane of the phenyl ring.[21] The preference for this planar structure has been rationalised by the presence of a stabilising CH⋅⋅⋅π HB interaction between an aromatic CH bond and the triple bond π-electron cloud. Although benzyl alcohol has been the subject of extensive experimental and theoretical studies,[16a, 22] there remains a degree of uncertainty about the number of stable conformers and their relative stabilities. The hydroxymethyl side chain is flexible and it is generally accepted that several conformers simultaneously exist in the gas phase, a situation similar to benzylamine and its derivatives.[23] The main suggested conformers of benzyl alcohol derivatives, defined by the ϕ (CCCαO) and χ (CCαOH) dihedral angles, are the gauche_gauche (g_g, also sometimes referred to as gauche_cis), gauche_trans (g_t), planar (pl) and perpendicular (perp) conformers (Figure 4 a,b and the Supporting Information for further details). In monofluorinated benzyl alcohols, the introduction of a methyl group at the Cα carbon was found to have a significant influence on the preferred conformation compared with o-fluoro benzyl alcohol, preferentially showing an OH⋅⋅⋅F IMHB,[24] to 2-fluoro-α-methylbenzyl alcohol,[25] mainly stabilised with an OH⋅⋅⋅π interaction. Theoretical calculations in the gas phase generally attribute the absolute minimum to the gauche_gauche conformation.[16a, b, d] However, depending on the theoretical methods and experimental techniques selected, different geometries have been proposed for the first local minimum,[16a, 22] and the situation is even more challenging in the solution state. In a previous study based on IR spectroscopy in CCl4 and CS2 solutions, the presence of gauche and planar conformations was suggested, but the perpendicular conformation could not be excluded.[22a]
Figure 4

Benzyl alcohol conformations: a) Description of the ϕ and χ dihedral angles of interest. b) Main conformations encountered in the benzyl alcohol structures in Newman representation along the C–Cα bond. c) Definition of proximal, distal and chelated gauche conformations for substituted benzyl alcohols. See the Supporting Information for detailed aspects of the nomenclature used.

Benzyl alcohol conformations: a) Description of the ϕ and χ dihedral angles of interest. b) Main conformations encountered in the benzyl alcohol structures in Newman representation along the C–Cα bond. c) Definition of proximal, distal and chelated gauche conformations for substituted benzyl alcohols. See the Supporting Information for detailed aspects of the nomenclature used. Hence, to support our experimental HB measurements, a detailed conformational analysis of the benzyl alcohol derivatives was required. Following the recommendations of Basso,[26] our analysis involved a polarisable continuum model (PCM) explicitly describing the hydrogen atoms to take into account the solvation effects on the conformational equilibrium of benzyl alcohol derivatives at the MP2/6-311++G(2d,p) level of theory, after optimisation at the IEFPCM-MPWB1K/6-31+G(d,p) level. The results are given in Tables 2–4, wherein the theoretical frequencies of the νOH stretching vibrations are also listed, and details of the computed relative free energies and conformer populations are provided in the Supporting Information (Table S1).
Table 2

Calculated populations pi of the conformers of nonfluorinated benzyl alcohol derivatives (1 a–9 a) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CCCαO) and χ (CCαOH) characterising the hydroxyl moiety orientation and calculated νOH stretching frequencies (IEFPCM-MPWB1K/6-31+G(d,p))[a]

CompoundConformerpi [%]ϕ [°]χ [°]νOH [cm−1][b]
1 ag_g8233603616
pl1801803646
2 ag_g6126/3659/613616
g_t2110/15173/1743645
pl1801803645
3 ag_g5728/2963/643618
pl430/5177/1803646
4 ag_g8226/3164/663618
pl180/8175/1803645
5 ag_g742165/673618
pl260/2179/1803645
6 ag_g6823/3068/693619
pl3201803645
7 ag_g9236/3957/613609
g_t8191743630
8 ag_g7810/6955/663619
pl1401803646
g_t8661743626
9 ag_g8961/8747/583615
perp8801733618
g_t322/63174/1763640/3623

[a] See Figure 4 for conformer definitions. When relevant, proximal/distal conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in the Supporting Information (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer.

Table 4

Calculated populations pi of the conformers of difluorinated benzyl alcohol derivatives (1 c–7 c) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CCCαO) and χ (CCαOH) characterising the hydroxyl moiety orientation and νOH stretching frequencies (IEFPCM-MPWB1 K/6-31+G(d,p))[a]

CompoundConformerpi [%]ϕ [°]χ [°]νOH [cm−1][b]
1 cg_chel7060673618
perp_t30891803625
2 cperp_t4093/94178/1793624
gp_chel3658/6167/693628/3635
gd_chel2459/6366/693626/3636
3 cgp_chel3362703620
gd_chel2959683618
perp_t39921783625
4 cgp_chel4060/6370/723618/3633
gd_chel2559/6268/703628/3637
perp_t3589/91179/1803624
5 cperp_g4685713625
perp_t29921783624
gp_chel1464723624
gd_chel1260703631
6 cperp_t4887/89178/1793624
gp_chel3163743619/3633
gd_chel206072/733625
7 cg_chel4853/6566/683612
g_g4156623623
g_t11581773618

[a] When relevant, proximal/distal, anti/syn and E/Z conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in SI (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer.

Calculated populations pi of the conformers of nonfluorinated benzyl alcohol derivatives (1 a–9 a) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CCCαO) and χ (CCαOH) characterising the hydroxyl moiety orientation and calculated νOH stretching frequencies (IEFPCM-MPWB1K/6-31+G(d,p))[a] [a] See Figure 4 for conformer definitions. When relevant, proximal/distal conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in the Supporting Information (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer. Calculated populations pi of the conformers of monofluorinated benzyl alcohol derivatives (1 b–9 b) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CorthoCipsoCαO) and χ (CipsoCαOH) characterising the hydroxyl moiety orientation and νOH stretching frequencies (IEFPCM-MPWB1K/6-31+G(d,p)[a] [a] See Figure 4 for conformer definitions. When relevant, proximal/distal, anti/syn and E/Z conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in the Supporting Information (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer. Calculated populations pi of the conformers of difluorinated benzyl alcohol derivatives (1 c–7 c) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CCCαO) and χ (CCαOH) characterising the hydroxyl moiety orientation and νOH stretching frequencies (IEFPCM-MPWB1 K/6-31+G(d,p))[a] [a] When relevant, proximal/distal, anti/syn and E/Z conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in SI (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer.

The Various Substituted Benzyl Alcohol Conformations

It should be noted that additional gauche and planar conformations can be distinguished when substitution in the ortho and/or meta position of the phenyl ring occurs. The proximal and distal conformers are therefore defined (Figure 4 (c)) when the hydroxyl group is oriented towards or at the opposite side of the substituent (with the ortho substitution prevailing over meta substitution, and with o-fluorine prevailing over o-alkyl groups). With o,o′-difluorination, distal/proximal refers to the position of the meta substituent. We also distinguish a g_chel conformation from a g_g conformation (Figure 4 (c)). In this conformation, a short H⋅⋅⋅F distance can be measured (see below). Finally, for compounds with m-OMe or m-OCF3 substituents, additional conformers occur depending on the position of the methyl/trifluoromethyl groups relative to the CH2OH group (see the Supporting Information for all structures). For simplicity, the conformers involving rotation along the Ar–OMe or Ar–OCF3 bonds are grouped together in Tables 2–4; a full account is provided in the Supporting Information.

Conformational Analysis of Substituted Benzyl Alcohols

Within the series of nonfluorinated compounds 1 a–9 a (Table 2), two or three of the various conformations evoked above are found, depending on the studied structure. In all cases, the g_g is systematically calculated to be the most populated conformation, though it is the absolute energetic minimum only for 1 a, 4 a, 6 a, 7 a and 9 a. The other compounds (2 a, 3 a, 5 a and 8 a) show a planar geometry as the most stable conformation. Our calculations confirm therefore that the g_g conformation is by far the most (in many cases even the only) populated of the possible gauche conformations. A perpendicular conformation is seen for 9 a only. The computed frequencies of the νOH stretching vibrations show that all the g_g conformers absorb at a lower frequency than the pl, g_t and perp forms. Therefore, the observed lower frequency absorption band was attributed to the g_g conformer, with the higher frequency band containing the possible contribution of the other conformers. This analysis is in line with a previous attribution by Visser.[22a] No further discrimination can be achieved between the other conformers because of the close values of their IR absorptions. Note that a scale factor has been applied to all computed νOH values to compare easily the experimental and the calculated νOH values for the benzyl alcohol g_g conformer. Within the series of o-monofluorinated compounds 1 b–6 b (Table 3 and Table S1 in the Supporting Information), the most abundant conformation is gauche, despite the planar structure is slightly more stable than the most stable gauche conformer, generally by approximately 1 kJ mol−1. This contrasts with a previous study dealing with 2-fluorobenzyl alcohol 1 b, for which the planar conformation was not identified as a major conformer by MW spectroscopy and MP2 calculations.[24] For the o-monofluorinated secondary benzyl alcohol 7 b, the planar conformation does not feature in the low-energy conformational landscape. In its main low-energy structures, the CHOH–CH3 bond is perpendicular to the plane of the phenyl ring, similar to the major ethyl benzene conformation and as found previously in the gas phase by MW spectroscopy.[25] In addition, approximately 10 % of the conformers have both the methyl and the hydroxyl groups in the gauche position. It is interesting to note that, apart from the chelated conformer, there is little preference for fluorine position: the proximal and distal populations are not significantly different. For the o-fluoro-o-alkyl substrates 8 b and 9 b, the calculations predict only proximal gauche conformations. Presumably, steric hindrance is also a significant factor for 8 b–9 b. In all cases, the gauche conformations overwhelmingly display a χ-angle of approximately 60° (i.e., g_g), whereas pl and perp conformations display a χ-dihedral angle of 180°.
Table 3

Calculated populations pi of the conformers of monofluorinated benzyl alcohol derivatives (1 b–9 b) in CCl4 medium at the IEFPCM-MP2/6-311++G(2d,p) level of theory. Optimised dihedral angles ϕ (CorthoCipsoCαO) and χ (CipsoCαOH) characterising the hydroxyl moiety orientation and νOH stretching frequencies (IEFPCM-MPWB1K/6-31+G(d,p)[a]

CompoundConformerpi [%]ϕ [°]χ [°]νOH [cm−1][b]
1 bgp_g2969573621
gp_chel2161673626
gd_g2018693620
pld1701803647
perp_t13821713627
2 bgd_g3114/21693620
gp_chel246065/663624/3636
gp_g2167/7356/593622
pld1801803648
gp_t2701653632
3 bpld3401803644
gd_g2715733621
gp_chel1762683634
perp_t13851723625
gp_g1068613620
4 bgd_g3214/1574/753621/3623
pld240/1179/1803644/3645
gp_chel2161/6368/703614/3638
gp_g1468/6961/623620/3622
perp_t971/82167/1723626/3630
5 bgp_g3467623621
gd_g3012/1376/773623
pld2801803645
gp_chel461693632
gp_t4711663630
6 bgd_g359793626
pld2701803643
gp_chel1361723633
gp_t13721683629
gp_g1267653622
7 bgp_chel2956/6163/673601/3635
gd_t25171773631
gp_g2258/6955/603606/3621
gd_g1815843610
gp_t662/72165/1693619
8 bgp_g8073633623
gp_chel1063663631
gdt10651793625
9 bgp,d_chel8370653632
gt1663/78163/1703626
gp,s_g162673619

[a] See Figure 4 for conformer definitions. When relevant, proximal/distal, anti/syn and E/Z conformations are grouped together. The detailed computed relative free energies and conformer populations are provided in the Supporting Information (Table S1). [b] Scaled by 3616/3972=0.91, the ratio between the calculated and the experimental νOH value for benzylalcohol g_g conformer.

Notably, all the planar conformations have a distal orientation, with a χ-angle of approximately 180°. Proximal planar conformations, with χ=180°, are not stabilised, presumably because of a repulsive interaction between the O and F atoms. From an IMHB perspective, one would expect to observe proximal planar conformations, with χ=0°. However, a geometrical relaxation systematically leads to a gauche conformation (g_chel), for which a short H⋅⋅⋅F distance can be measured. Within series b, this distance ranges from 2.166 to 2.317 Å; that is, 10 to 16 % shorter than the sum of fluorine and hydrogen van der Waals radii.[27] The contributions of this conformation to the whole population vary from 4 % in 4 b (with the m-trifluoromethoxy substituent) to almost 30 % in 7 b (α-methylbenzylalcohol). In compound 8 b (o-methyl group), the chelated form represents only 10 % of the population. Conversely, in 9 b (tert-butyl substituent), g_chel (83 %) is significantly favoured in comparison with the other conformations, probably because of the steric hindrance induced by this bulky substituent. The computed frequencies of the νOH stretching band are similar to those of series a. Indeed, the pl conformations are predicted to absorb at approximately 3640 cm−1 and the g_g forms at approximately 3620 cm−1. In addition, the νOH stretching vibration of the g_chel conformers absorb at 3630 cm−1. This can explain the shape of the experimental νOH bands, which display broad envelops with no clear maxima, as opposed to three distinguishable bands. The conformational features of series c, with two ortho-fluorine atoms, eventually appear to be the simplest (Table 4). Consistent with the existence of only distal planar conformations for which there is a fluorine atom in the o-position, with o,o′-difluorination, no planar conformations are observed at all. The electronic repulsion between the lone pairs of the oxygen and fluorine atoms is expected to repel the hydroxyl group out of the aromatic plane. Hence, only gauche and perpendicular conformations are found, the energetically favoured one depending on the chemical nature of the substituent. In this series, the proportion of the OH⋅⋅⋅F g_chel forms is much more important than in the b series (e.g., from 25 % in 5 c to 70 % in 1 c). It is also interesting to compare the relative population of the proximal and distal chelated conformations. Indeed, from 2 c to 6 c, the g_chel conformers are slightly, but systematically, preferred over the g_chel conformers, indicating a difference in IMHB accepting capacity of the two ortho-fluorine atoms. Finally, it is noteworthy that, in most cases in the c series, the gauche conformations are systematically chelated, but 7 c also shows g_g and g_t conformers. The νOH stretching vibrations for the various conformations of a given compound in series c are computed at closer wavenumbers than in series a and b (from 3612 to 3637 cm−1 instead of 3606 to 3648 cm−1). This suggests that these conformations absorb at approximately the same frequencies in the 2,6-difluoro derivatives, in agreement with the narrow bands observed experimentally, contrasting with the broad bands obtained for nonfluorinated and monofluorinated compounds.

AIM and NCI Analysis

The presence of intramolecular interactions, including a possible OH⋅⋅⋅F IMHB interaction, was investigated by AIM analysis. However, in some cases that have been described previously, the AIM theory has been shown to fail in identifying any bond-critical point (BCP) for an IMHB, whereas other theoretical and experimental features were consistent with the occurrence of such an interaction.[28] We have therefore complemented the AIM calculations by conducting an NCI analysis. The difference in population between chelated and nonchelated gauche conformers for series b and c invited analysis. It was found that, for the relevant g_chel conformations of these compounds, AIM and NCI analyses do confirm the occurrence of an intramolecular OH⋅⋅⋅F hydrogen bond. The electron density at the BCP, ρb, ranging from 0.010 to 0.015 e bohr−3, and the positive value of the Laplacian, ∇2ρb, are consistent with an IMHB between the fluorine and the hydroxyl moieties for g_chel conformations of the 2-fluorobenzyl alcohols (Table S2). For the 2,6-difluorinated benzyl alcohols, no significant difference between ρb and ∇2ρb is found with respect to series b, suggesting that the OH⋅⋅⋅F interaction strength is similar for the 2-fluoro- and 2,6-difluorobenzyl derivatives. Nevertheless, comparing the proximal and distal conformers, ρb is generally found to be slightly higher when the IMHB involves the 6-fluoro (distal) rather than the 2-fluoro (proximal) atom. This suggests a slightly stronger interaction with the 6-fluorine atom. Moreover, the NCI analysis also shows, for the 2,6-difluorinated derivatives, that an additional CαH⋅⋅⋅F attractive contribution occurs, as illustrated in Figure 5 with the example of the 1 c­ g_chel conformer. This extra stabilising interaction is clearly not possible for the chelated monofluorinated benzyl alcohols. In addition, with two fluorine atoms in the ortho position in series c, the g_g conformations appear as g_chel conformations, to optimise the attractive OH⋅⋅⋅F and Cα⋅⋅⋅F interactions and minimise the repulsive O⋅⋅⋅F interactions. This may explain the significant difference in population of the g_chel structure between series b and c.
Figure 5

NCI isosurface plots of g_chel benzyl alcohol conformations of 1 b,c drawn with a reduced density gradient (RDG) value of 0.6 and the blue (attractive) green (van der Waals) red (repulsive) values ranging from −0.02 to 0.01 a.u. An attractive OH⋅⋅⋅F contribution is observed in 1 b, and a weak additional CαH⋅⋅⋅F interaction is found in 1 c.

NCI isosurface plots of g_chel benzyl alcohol conformations of 1 b,c drawn with a reduced density gradient (RDG) value of 0.6 and the blue (attractive) green (van der Waals) red (repulsive) values ranging from −0.02 to 0.01 a.u. An attractive OH⋅⋅⋅F contribution is observed in 1 b, and a weak additional CαH⋅⋅⋅F interaction is found in 1 c. An estimation of the HB energy (EHB), based on the potential energy density V at the BCP, has been proposed previously[29] and was found to be 12 kJ mol−1 in the case of CH⋅⋅⋅O IMHBs.[30] In the compounds under study, it appears that the energies of the IMHBs occurring between the fluorine and the hydroxyl groups are slightly larger, ranging from 12 to 19 kJ mol−1 (Table S2). An examination of the computed EHB values for the various derivatives does not reveal any general trend indicating that a significant increase of HB energy occurs from monofluorinated (series b) to difluorinated (series c) benzyl alcohols. Nevertheless, comparing the proximal and distal conformers in series c, the HB energy values are generally found to be slightly higher when the IMHB involves the 6-fluoro (distal) rather than the 2-fluoro (proximal) atom. This suggests a slightly stronger interaction with the 6-fluorine atom. In fact, many additional intramolecular interactions are revealed by the NCI analysis occurring besides or instead of the OH⋅⋅⋅F interaction, which may provide insight into how the different conformations are stabilised (Figure 6). For example, in the planar conformation of 1 a and 1 b (Figure 6 (a)), an attractive CH⋅⋅⋅O interaction is found (Table S2), with a concomitant C⋅⋅⋅F repulsive contribution for 1 b. For a hypothetical pl conformation, the NCI analysis reveals a rather large F⋅⋅⋅OH repulsion, which may explain why there is no pl conformation in series b, and no planar conformation in series c. For the gauche conformers (Figure 6(b)), an attractive CH⋅⋅⋅O interaction similarly stabilises the g_g conformation. In addition, for 1 b, the ortho-fluorination now provides a weak attractive van der Waals CαH⋅⋅⋅F interaction (for the distal gauche). Conversely, the 1 b­ g_g structure is destabilised by an O⋅⋅⋅F repulsion. Weak van der Waals CαH⋅⋅⋅F interactions also occur in the perpendicular forms of 1 b and 1 c (Figure 6(c)). These extra intramolecular interactions can also provide an explanation as to why the g_t conformers rarely occur in the various compounds. It is actually often found that starting from such a conformer, relaxation to a planar conformation to accommodate a stabilising CH⋅⋅⋅O interaction, or to a perpendicular conformation to minimise the O⋅⋅⋅F repulsion and favour van der Waals CαH⋅⋅⋅F interactions, occurs.
Figure 6

NCI isosurface plots of benzyl alcohols 1 a–c drawn with a reduced density gradient (RDG) value of 0.6 and the blue-green-red values ranging from −0.02 to 0.01 a.u. The pl and some g_g conformations show an attractive CH⋅⋅⋅O contribution, whereas a weak CH⋅⋅⋅F interaction is found in the perp and other g_g conformers.

NCI isosurface plots of benzyl alcohols 1 a–c drawn with a reduced density gradient (RDG) value of 0.6 and the blue-green-red values ranging from −0.02 to 0.01 a.u. The pl and some g_g conformations show an attractive CH⋅⋅⋅O contribution, whereas a weak CH⋅⋅⋅F interaction is found in the perp and other g_g conformers. In most, if not all cases, there are a multitude of attractive and repulsive effects operating, and it is difficult to explain population differences between rotamers based on simple comparisons of interactions.

NBO Calculations

A further analysis of the conformational preferences of benzyl alcohol derivatives was carried out through NBO calculations. Only the benzyl, m-fluorobenzyl and m-nitrobenzyl alcohol series with zero, one, and two ortho-fluorines (1 a–c, 3 a–c, 6 a–c) were considered, each having zero, an intermediate, and a large m-substituent effect, respectively. The main E(2)n→σ* interaction energies are gathered in Table S3 in the Supporting Information. Considering the conformations exhibiting an OH⋅⋅⋅F IMHB, the interaction energies between the nF fluorine lone pairs and the σ*OH antibonding orbital are rather small (ca. 4 kJ mol−1), and do not fundamentally differ from the monofluoro to the difluorobenzyl alcohols. A slight increase of the interaction energies is observed when the chelation occurs with the 6-fluoro substituent rather than with the 2-fluoro substituent. These trends are in reasonable agreement with the electron densities ρb and EHB calculated at the BCP, and further clarify why the chelated structures are not dominant in monofluorinated benzyl alcohols. For the planar and perpendicular conformations, the nO→σ*C1−Cα interactions are rather weak, with E(2)n→σ* of 6–8 kJ mol−1. In return, hyperconjugation occurs between the σOH and σC1−Cα orbitals (ca. 13 kJ mol−1 for σOH→σ*C1−Cα and 8 kJ mol−1 for σC1−Cα→σ*OH). In addition, the weak nO→σ*=CH interaction stabilises the planar forms of series a and b slightly (ca. 3 kJ mol−1), and an energetically equivalent nF→σ*Cα−O interaction also occurs in series b. Clearly, the aromatic system is also available to provide a stabilising interaction with the hydroxyl moiety. The charge transfer from the π bonding orbitals to the σ*Cα−O antibonding orbital shows the highest contribution (up to 30 kJ mol−1), smaller σCα−O→π*C=C, σCα−O→σ*C=C and σC=C→σ*Cα−O contributions being systematically found irrespective of the considered conformation. For the gauche conformations, the nO→σ*C1−Cα interaction is significant, with E(2)n→σ* of 30 to 40 kJ mol−1 in comparison with the planar and perpendicular conformations. This may explain the significant preference of the g_g conformation over the corresponding g_t conformation (see above). In addition, the πC=C→σ*Cα−O interactions are also significant, but, interestingly, only for the fluorinated derivatives (E(2)n→σ* of 20 to 30 kJ mol−1 for series b, c, but <10 kJ mol−1 for series a). In summary, numerous hyperconjugative interactions occur in the different conformers of fluorinated benzyl alcohols. If an OH⋅⋅⋅F IMHB indeed appears in some of the gauche conformers, it is clearly not a driving force for the conformational preference, with the nO→σ*C1−Cα, σOH→σ*C1−Cα, πC=C→σ*Cα−O interactions being at least of the same order of magnitude.

Main Conformational Features

To sum up this section, it is shown that the conformational preferences adopted by benzyl alcohols are significantly influenced by the presence of fluorine atom(s) in the ortho position. Without any fluorine, g_g and pl conformers represent 80 to 100 % of the relative populations in series a, with an attractive CH⋅⋅⋅O interaction stabilising these conformations. An OH⋅⋅⋅F IMHB conformer, from 4 to 83 %, appears in series b with the presence of one fluorine atom, decreasing the relative population of the g_g conformers, the pl population being almost unchanged. The g_chel and perp structures represent 100 % of the population in most difluorinated benzyl alcohols. The stabilisation of the perp conformers is due to attractive CαH⋅⋅⋅F contacts occurring with both ortho-fluorine atoms, whereas an OH⋅⋅⋅F IMHB with one fluorine atom and a CαH⋅⋅⋅F interaction with the second fluorine concomitantly stabilise the g_chel structures. The second case is almost systematically preferred over the first.

HB Acidity of Benzyl Alcohols

Experimental HB Acidity Measurements

The HB-donating capacity of the alcohols was determined by using an IR method through complexation with a standard HB acceptor, N-methyl-2-pyrrolidinone (NMP) in CCl4 at 25 °C (Scheme 1).[31] The decrease in intensity of the νOH band with increasing amount of NMP was measured, as well as the actual frequency shifts, ΔνOH, resulting from complexation with NMP in relation to the corresponding free νOH(2) band. The former allows determination of the equilibrium constant of the reaction, expressed as the thermodynamic HB acidity value KAHY, and the latter is an indication of the relative strength of the hydrogen bond that is formed. Considering homogeneous families of compounds that do not exhibit additional specific effects (such as steric effects or IMHB), these two experimental parameters are generally well correlated, with ΔνOH then corresponding to a spectroscopic HB scale.[31]
Scheme 1

Experimental determination of the HB-donating capacity of the benzyl alcohol derivatives.

Experimental determination of the HB-donating capacity of the benzyl alcohol derivatives. The frequency shifts, ΔνOH, the measured pKAHY, and the corresponding free energies of complexation, ΔGAHY, are gathered in Table 1. An energetic range of approximately 7 kJ mol−1 (1.3 pK units) is covered by the current data set.

Measurement of the Equilibrium Constants (KAHY)

The increase of the HB acidity, pKAHY, for the nonfluorinated benzyl alcohols (1 a–6 a) follows the increase in the electron-withdrawing substituent effects of R (H32] Therefore, from the unsubstituted benzyl alcohol (1.03) to 3-nitrobenzyl alcohol (1.79), the HB acidity increase represents 4.3 kJ mol−1. With the addition of one methyl group in the ortho- (8 a) or in the α-position (7 a), a slight decrease in pKAHY is measured (0.2 or 0.4 kJ mol−1, respectively). Similar trends are observed (Figure 7) in the ortho-monofluorinated and o,o′-difluorinated series b and c, with respective energetic ranges of 5.3 and 4.2 kJ mol−1. More interestingly, irrespective of the nature of the meta-substituent in series b, an increase of HB acidity values (between 0.13 and 0.24 pK units, from 0.5 to 1.4 kJ mol−1) is measured upon monofluorination with respect to the nonfluorinated counterpart in series a. The fluorine atom plays its role of electron-withdrawing substituent, decreasing the electron density around the hydroxyl moiety. With a pKAHY value of 1.98, 2-fluoro-5-nitrobenzyl alcohol (6 b) is the strongest HB donor in the current experimental data set.
Figure 7

Repartition of the pKAHY acidity of substituted benzyl alcohols upon ortho-mono- and difluorination.

Repartition of the pKAHY acidity of substituted benzyl alcohols upon ortho-mono- and difluorination. Conversely, further fluorination at the second ortho-position does not lead to a further increase of HB acidity (series c), highlighting a different behaviour. Indeed, a significant decrease is measured of 0.22 to 0.35 pK units in comparison with series b, rendering the pKAHY values even weaker than for the nonfluorinated benzyl alcohols. The conformational analysis has shown that the OH⋅⋅⋅F IMHBs are not stronger in the difluorinated than in the monofluorinated derivatives, but rather that the chelated forms allow an optimal accommodation of the attractive OH⋅⋅⋅F and CαH⋅⋅⋅F and the repulsive O⋅⋅⋅F interactions, increasing their relative populations (compare the populations of g_chel conformers in b and c derivatives in Tables 3 and 4). This suggests that the decrease of HB acidity in series c could originate in the higher propensity of difluorinated derivatives to be intramolecularly chelated. A rational tuning of HB acidity can therefore be realised in such benzyl alcohols by choosing monofluorination rather than difluorination, or vice versa. A similar evolution is observed for the α-methylbenzyl alcohols 7, for which an expected HB acidity increase is measured (+0.09) upon monofluorination, whereas the presence of a second fluorine atom has a dramatic weakening effect (−0.35). Interestingly, a decrease of HB acidity is observed upon fluorination in the case of compounds 8, rather than an increase, as found for the monofluorinated benzyl alcohols. The OH⋅⋅⋅F IMHB contributes to the HB acidity decrease, but not in a higher proportion than in the other monofluorinated benzyl alcohols because the relative population of the chelated forms are of the same order of magnitude (see below).

Measurement of the Frequency Shifts (ΔνOH)

The highest values of the frequency shifts, upon complexation with NMP, are measured with the 2,6-difluoro derivatives, compared with 2-fluoro and finally nonfluorinated benzyl alcohols. This trend would suggest that the ability of the studied compounds to act as HB donor with an external HB acceptor should increase from series a to series c. However, as illustrated in Figure 8, the pKAHY/Δν(OH) correlation breaks down for the difluorinated benzyl alcohols, with a systematic undervaluation of the experimental HB acidity for the observed IR shift. This illustrates that pKAHY and ΔνOH measure two different characteristics: the former is the equilibrium with an external acceptor, the latter is the strength of the hydrogen bond formed. The difluorinated benzyl alcohols lead to the strongest HBs with the acceptor, but the equilibrium reaction with NMP is disturbed by IMHB with the fluorine atoms. Compound 8 b, with its o-methyl substituent, is also a significant outlier, probably for steric reasons. In other words, these downward deviations from the pKAHY/Δν(OH) correlation line, observed in a very homogeneous set of benzyl alcohols, are a clear indication of a significant amount of IMHB conformations for the corresponding compounds.
Figure 8

Plot of pKAHY versus Δν(OH) frequency shift for benzylalcohols (square), o-fluorobenzylalcohols (circle) and o,o′-difluorobenzylalcohols (triangle). The whole series c and compound 8 b, are significant outliers from the calibration line (full line) established with series a and b. The dashed line was previously established for a series of hydroxyl compounds.[31]

Plot of pKAHY versus Δν(OH) frequency shift for benzylalcohols (square), o-fluorobenzylalcohols (circle) and o,o′-difluorobenzylalcohols (triangle). The whole series c and compound 8 b, are significant outliers from the calibration line (full line) established with series a and b. The dashed line was previously established for a series of hydroxyl compounds.[31] Interestingly, the dashed line in Figure 8 corresponds to the calibration line established for a series of (non-benzylic) hydroxyl-containing compounds in which an upward deviation of the benzyl alcohol 6 a remained unexplained.[31] It is now rationalised because the benzyl alcohol family finally does not exactly fit to the hydroxyl series.

Theoretical HB Acidity Estimation

The electrostatic potential Vα(r), as proposed by Kenny,[15] has recently been shown to be an appropriate descriptor to estimate the HB acidity of hydroxyl compounds[31] including fluorohydrins.[6c] We have shown in fluorinated cyclohexanols that the ability of the hydroxyl group to behave as a HB donor is weakened when an IMHB occurs, and a concomitant decrease of the Vα(r) value is observed. It remained to be seen whether the flexible fluorinated benzyl alcohol structures under study could be described accurately by this theoretical descriptor. The initial data sets[6c, 31] were considered in the gas phase at the MPWB1K/6-31+G(d,p) level of theory. The Vα(r) value was determined for each conformation, and the predicted pKAHY value was then the weighted sum. Such a treatment leads to a poor correlation between the computed Vα(r) descriptor and the experimental pKAHY HB acidity. Indeed, predicted values and experimental data differ by −0.31 to 0.22, with a sum square of 0.472 and a standard deviation of 0.152 (not shown). Therefore, a significant improvement of the theoretical methodology is clearly necessary to obtain useful predicted values. At first, such an improvement may be obtained by including solvation effects in the calculations. Indeed, for a given compound, the population of the different conformers can change significantly in CCl4, hence impacting on the weighed Vα(r) value, and ultimately the predicted pKAHY values (Table 5). The statistics are actually only slightly improved by using either the IEFPCM or the SMD (data not shown) continuum models, with the sum squares decreasing to 0.325 and 0.403, and the standard deviations to 0.127 and 0.142, respectively. Notably, the relative population of the OH⋅⋅⋅F chelated conformers of the 2,6-difluorinated derivatives are systematically smaller at the MP2/6-311++G(2d,p) level with respect to the MPWB1K/6-31+G(d,p) level, whereas they are slightly higher for the 2-fluorinated derivatives. As a consequence, the MP2 weighed Vα(r) values are larger than the MPWB1K values in series c, leading to higher predicted pKAHY values. Conversely, the Vα(r) values are lowered in series b at the MP2 level, and hence the predicted pKAHY values are also lowered. A further improvement of the HB acidity prediction is therefore obtained at the IEFPCM-MP2/6-311++G(2d,p)//MPWB1K/6-31+G(d,p) level, with a sum square value of 0.280 and a standard deviation of 0.112. Figure 9 illustrates the improvement of the correlation between the experimental HB acidity and the computed Vα(r) descriptor according to the selected level of theory. However, although a statistical improvement is found with MP2 values, the MPWB1K values are to some extent more chemically reliable. Indeed, if the observed decrease of H-bond acidity upon o,o′-difluorination of the phenyl ring is rather equivalently estimated with both methods, the increase upon o-monofluorination is much more properly described at the DFT level. On the contrary, the MP2 method quasisystematically predicts a decrease of pKAHY, which is clearly opposite to the experimental trend. For this reason, the use of IEFPCM-MPWB1K/6-31+G(d,p) results for the H-bond acidity prediction of fluorobenzylalcohols is recommended.
Table 5

Predicted pKAHY HB acidity 0of benzyl alcohols, calculated from the weighted Vα(r) values, estimated from either MPWB1K or MP2 populations. The difference with the experimental value is given

EntryMPWB1K/6-31+G(d,p)MP2/6-311++G(2d,p)
pKAHY (calc)ΔpKAHYpKAHY (calc)ΔpKAHY
1 a1.040.011.01−0.02
1 b1.160.001.00−0.16
1 c0.70−0.240.78−0.16
2 a1.070.011.060.00
2 b1.14−0.071.00−0.21
2 c0.59−0.270.74−0.12
3 a1.450.131.440.12
3 b1.600.121.47−0.01
3 c1.05−0.161.15−0.06
4 a1.600.141.590.13
4 b1.69−0.011.55−0.15
4 c1.201.28
5 a1.610.131.600.12
5 b1.810.141.700.03
5 c1.381.47
6 a1.920.131.910.12
6 b2.070.091.96−0.02
6 c1.61−0.081.690.00
7 a0.83−0.130.82−0.14
7 b0.92−0.130.84−0.21
7 c0.67−0.030.720.02
8 a1.030.040.89−0.10
8 b0.84−0.100.85−0.09
9 a0.670.63
9 b0.390.41
Figure 9

Distribution of the experimental pKAHY HB acidity of benzyl alcohols (circle) towards the weighed Vα(r) electrostatic descriptor (top: IEF-PCM/MP2/6-311++G(2d,p)//MPWB1K/6-31+G(d,p) level, bottom: IEF-PCM/MPWB1K/6-31+G(d,p) level). The calibration line between these two parameters was previously established with a series of alcohols and phenols (diamond) and of fluorohydrins (triangle).

Predicted pKAHY HB acidity 0of benzyl alcohols, calculated from the weighted Vα(r) values, estimated from either MPWB1K or MP2 populations. The difference with the experimental value is given Distribution of the experimental pKAHY HB acidity of benzyl alcohols (circle) towards the weighed Vα(r) electrostatic descriptor (top: IEF-PCM/MP2/6-311++G(2d,p)//MPWB1K/6-31+G(d,p) level, bottom: IEF-PCM/MPWB1K/6-31+G(d,p) level). The calibration line between these two parameters was previously established with a series of alcohols and phenols (diamond) and of fluorohydrins (triangle).

Rationalisation of HB Acidity Evolution Trends

It is interesting to observe the evolution of the Vα(r) descriptor for the different conformations (Table S1). Comparing equivalent conformations, there is a clear trend for the Vα(r) values to be higher for the fluorinated compounds than for the nonfluorinated compounds. This is an expected effect of the fluorine electronegativity on its surroundings. The planar conformations (which are always distal in series b) generally have the largest Vα(r) values, owing to the emphasised CH⋅⋅⋅O stabilising interaction depleting the electron density around the oxygen atom and hence around the hydroxyl hydrogen. The fluorine electron-withdrawing effect also operates in the perp conformers (when available, compounds 1 b, 3 b, 4 b), as revealed by the increased Vα(r) values for mono- and difluorinated substrates. On the other hand, as expected, g_chel conformations show low Vα(r) values because of the intramolecular hydrogen bonding. The observations discussed above would explain the HB acidity increase for the monofluorinated compounds, because the g_chel conformations are too weakly populated to have a detrimental effect on the HB acidity, and all the other conformers show an increased Vα(r) value. In this context, it is interesting to note that the monofluorinated 8 b, which has no pl conformation contribution due to the o-methyl group, shows a HB acidity decrease. For the difluorinated compounds, with the g_chel conformations being the dominant conformations, their strongly decreased Vα(r) values explain their decrease in HB acidity. Furthermore, in this series, the absence of any pl conformations (showing high Vα(r) values) further exacerbates this decrease of HB-donating ability.

Conclusions

A series of 25 benzyl alcohol derivatives has been investigated by FTIR measurements and quantum chemical calculations, revealing the following trends in terms of conformational preferences and HB-donating capacities. The g_g conformers are found to be the most populated minima within the series of nonfluorinated compounds (series a), with significant amounts of pl conformers. An attractive CH⋅⋅⋅O interaction is found to stabilise these conformations. The occurrence of g_t and perp conformations are found to be more marginal. With the introduction of one fluorine atom in the ortho-position (series b), additional g_g conformers appear, identified as g_chel, showing an OH⋅⋅⋅F IMHB interaction. Their occurrence ranges from 4 to 83 % at the expense of the nonchelated g_g conformers. The population of the pl conformers remains almost the same as in series a. With a second ortho-fluorine (series c), the g_chel and perp conformations become almost the only populated forms, whereas they were clearly less abundant in series a and b. It is shown that both structures benefit from one (g_chel) or two (perp) attractive CαH⋅⋅⋅F contacts, in addition to the OH⋅⋅⋅F IMHB for the g_chel conformers. As a result, the OH⋅⋅⋅F IMHB is not found to be the main driving force in guiding the conformational preferences of 2-fluorobenzyl alcohols. The population of such chelated conformers is significant for 2,6-difluorobenzyl alcohols with the help of a CαH⋅⋅⋅F interaction, but in competition with perp conformers in which two CαH⋅⋅⋅F interactions occur. An increase of HB acidity is quasi-systematically measured upon monofluorination, because of the electron-withdrawing effect of fluorine. This is nicely illustrated by the increase of the electrostatic potential descriptor Vα(r) values; all the conformers contributing to the HB-donating capacity increase, except the g_chel conformer, but its population is not important enough to have a significant influence on the overall HB-donating capacity. The tremendous loss of HB-donating capacity upon difluorination, with the corresponding alcohol being an even weaker HB donor than its nonfluorinated counterpart, is less expected. The contribution of the perp structures in series c would lead to a further increase in HB acidity compared with monofluorinated benzyl alcohols, but this is overcompensated by the large amount of chelated conformers. Indeed, a significant lowering of the computed Vα(r) values for these chelated conformers characterises the HB acidity decrease of series c. The modulations of the HB acidity can therefore be easily rationalised by the Vα(r) descriptor, by considering its evolution along the conformational profile. Hence, our study provides methodology to either increase or decrease the HB-donating capacity of benzylic alcohols by judicious fluorination.

Experimental Section

Chemicals: Carbon tetrachloride solvent, of spectroscopic grade, was kept for several days over freshly activated 4 Å molecular sieves before use. Commercial N-methyl-2-pyrrolidinone (99.5+% purity) was also stored over molecular sieves in the dark to prevent its deterioration. All benzyl alcohols were dried over 4 Å molecular sieves for the liquid compounds and over P2O5 during their sublimation for the solid compounds. FTIR spectrometry measurements: The handling of all chemicals and their CCl4 solutions and the filling of the cells for IR measurements were performed in the dry atmosphere of a glove box at RT. IR spectra were recorded in carbon tetrachloride solutions with a Fourier transform spectrometer (Bruker Vertex 70) at a resolution of 1 cm−1. An Infrasil quartz cell (l=1 cm path length and thermostatted at 25.0±0.2 °C by Peltier effect regulation) was used for the studies of HB complexation. The HB acidity, pKAHY, of the benzyl alcohols under study were measured as described recently.[31] The molar absorption coefficients, εOH, required for the equilibrium constant measurements, were calculated for each compound at the frequency of the absorption maxima. It is consequently an apparent εOH value because the alcohol concentration is distributed over several conformers. This conformation equilibrium is re-established after HB complexation because the shape of this free νOH stretching band is constant, as shown in Figure 10. This apparent value can therefore be safely used to calculate the concentration of free alcohol, and, as a result, the HB equilibrium constant.
Figure 10

IR spectra of m-trifluoromethylbenzyl alcohol (5 a) in the νOH stretching region, a) without and b, c, d) with increasing amounts of N-methyl-2-pyrrolidinone. The spectra have been normalised on the free νOH stretching band (3616 cm−1) to show the consistency of its profile.

IR spectra of m-trifluoromethylbenzyl alcohol (5 a) in the νOH stretching region, a) without and b, c, d) with increasing amounts of N-methyl-2-pyrrolidinone. The spectra have been normalised on the free νOH stretching band (3616 cm−1) to show the consistency of its profile.

Computational Procedures

All DFT calculations were performed with the D.01 version of the Gaussian 09 program applying default procedures, integration grids, algorithms and parameters.[33] The MPWB1K functional[34] was selected, in combination with the 6-31+G(d,p) basis set, for the conformational study of benzylic alcohols. These compounds appear to be rather flexible, with two main degrees of freedom around the ϕ (CCCαO) and χ (CCαOH) dihedral angles, and possibly around the meta-substituent. In the current work, we have taken into account solvation effects by applying the polarisable continuum solvation model (CCl4 as solvent) within the integral equation formalism (IEFPCM). Basso has demonstrated, in the case of flexible 2-halocyclohexanols in dichloromethane, acetone and methanol, that the use of individual spheres for the hydrogen atoms is required to build the molecular cavity in the PCM model,[26] for a proper description of their conformational preferences, the well-known UAHF (United Atom for Hartree–Fock) scheme, with implicit hydrogens, led to results that opposed the NMR experimental trends. Hence, we have used the UFF cavity model,[35] which allows hydrogen atoms to be described explicitly, during each geometry optimisation procedure. The conformational equilibrium of benzyl alcohol derivatives was investigated at the IEFPCM-MPWB1K/6-31+G(d,p) level The vibrational spectrum was computed for each optimised structure to check that there was no imaginary frequencies and to obtain free energies. Single-point calculations were then performed at the IEFPCM-MP2/6-311++G(2d,p) level. The relative populations p [Eq. (1)] of the various conformers were hence evaluated from the computed free energies, at the selected levels of theory, through a Boltzmann distribution. The theoretical descriptors were weighted according to these populations. IMHB interactions were analysed in detail through AIM topological analysis of the MPWB1K/6-31+G(d,p) wave functions with the AIM2000 program.[39] Besides the electron densities ρb and their Laplacians ∇2ρb, the potential energy density Vb at the BCP is often used to gain additional insights into the strength of a given HB.[36] Indeed, the HB energy can be estimated by using Vb according to the established relationship in Equation (2):[29] The NCI topological[13] and NBO[14] analyses of the same wavefunctions were performed with NCIPLOT 3.0[37] and NBO 6.0[38] programs, respectively. The HB acidity of the compounds under study were evaluated as recommended previously[31] through calculation of the Kenny Vα(r) descriptor.[15] It involves calculating the electrostatic potential value along the OH bond at a distance r=0.55 Å from the hydroxyl hydrogen atom, at the MPWB1K/6–31+G(d,p) level in vacuo to use the established calibration line [Eq. (3)]:
  38 in total

1.  Alicyclic ring structure: conformational influence of the CF2 group in cyclododecanes.

Authors:  Maciej Skibinski; Yi Wang; Alexandra M Z Slawin; Tomas Lebl; Peer Kirsch; David O'Hagan
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-20       Impact factor: 15.336

2.  FT-Raman and FTIR spectra, assignments and ab initio calculations of 2-aminobenzyl alcohol.

Authors:  N Sundaraganesan; H Saleem; S Mohan; M Ramalingam
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-01-14       Impact factor: 4.098

Review 3.  Selective fluorination in drug design and development: an overview of biochemical rationales.

Authors:  Kenneth L Kirk
Journal:  Curr Top Med Chem       Date:  2006       Impact factor: 3.295

Review 4.  Fluorinated liquid crystals--properties and applications.

Authors:  Michael Hird
Journal:  Chem Soc Rev       Date:  2007-09-14       Impact factor: 54.564

5.  Intramolecular hydrogen bonds and conformational properties of benzylamine.

Authors:  S Melandri; A Maris; P G Favero; W Caminati
Journal:  Chemphyschem       Date:  2001-03-16       Impact factor: 3.102

Review 6.  The pK(BHX) database: toward a better understanding of hydrogen-bond basicity for medicinal chemists.

Authors:  Christian Laurence; Ken A Brameld; Jérôme Graton; Jean-Yves Le Questel; Eric Renault
Journal:  J Med Chem       Date:  2009-07-23       Impact factor: 7.446

Review 7.  Molecular recognition in chemical and biological systems.

Authors:  Elke Persch; Oliver Dumele; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2015-01-28       Impact factor: 15.336

Review 8.  Understanding organofluorine chemistry. An introduction to the C-F bond.

Authors:  David O'Hagan
Journal:  Chem Soc Rev       Date:  2007-10-17       Impact factor: 54.564

9.  Hydrogen-bond acidity of OH groups in various molecular environments (phenols, alcohols, steroid derivatives, and amino acids structures): experimental measurements and density functional theory calculations.

Authors:  Jérôme Graton; François Besseau; Anne-Marie Brossard; Eloïse Charpentier; Arnaud Deroche; Jean-Yves Le Questel
Journal:  J Phys Chem A       Date:  2013-12-02       Impact factor: 2.781

10.  The difluoromethylene (CF2) group in aliphatic chains: Synthesis and conformational preference of palmitic acids and nonadecane containing CF2 groups.

Authors:  Yi Wang; Ricardo Callejo; Alexandra M Z Slawin; David O'Hagan
Journal:  Beilstein J Org Chem       Date:  2014-01-06       Impact factor: 2.883

View more
  2 in total

1.  A Study of Intramolecular Hydrogen Bonding in Levoglucosan Derivatives.

Authors:  Lucas Quiquempoix; Elena Bogdan; Neil J Wells; Jean-Yves Le Questel; Jérôme Graton; Bruno Linclau
Journal:  Molecules       Date:  2017-03-24       Impact factor: 4.411

2.  3-Fluoro-4-hydroxyprolines: Synthesis, Conformational Analysis, and Stereoselective Recognition by the VHL E3 Ubiquitin Ligase for Targeted Protein Degradation.

Authors:  Andrea Testa; Xavier Lucas; Guilherme V Castro; Kwok-Ho Chan; Jane E Wright; Andrew C Runcie; Morgan S Gadd; William T A Harrison; Eun-Jung Ko; Daniel Fletcher; Alessio Ciulli
Journal:  J Am Chem Soc       Date:  2018-07-12       Impact factor: 15.419

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.