Literature DB >> 26123767

Equilibrium gels of trivalent DNA-nanostars: Effect of the ionic strength on the dynamics.

Francesca Bomboi1, Silvia Biffi2, Roberto Cerbino2, Tommaso Bellini2, Federico Bordi3, Francesco Sciortino3.   

Abstract

Self-assembling DNA-nanostars are ideal candidates to explore equilibrium gelation in systems composed of limited-valence particles. We present here a light scattering study of the dynamics in a trivalent DNA-nanostars equilibrium gel and of its dependence on ionic strength and concentration. Reversible bonds between different nanostars, whose formation is sensitively dependent on temperature, concentration and ionic strength, are provided by complementary DNA sticky ends. We find that the decay of the density correlations is described by a two-step relaxation process characterised by: i) a slow time scale that varies over nearly four orders of magnitude in a temperature window of less than 30 degrees; ii) an increase of the amplitude (the so-called non-ergodicity factor) of the slow relaxation. The slow process follows an Arrhenius law with temperature. We observe that the activation enthalpy does not depend on the ionic strength and that the dependence of the relaxation time on the ionic strength can be rationalized in terms of the free-energy cost of forming a sticky-end duplex. Finally, we observe that dynamics is insensitive to nanostar concentration, in full agreement with the predicted behaviour in equilibrium gels.

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Year:  2015        PMID: 26123767     DOI: 10.1140/epje/i2015-15064-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  31 in total

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2.  Slow dynamics in gelation phenomena: from chemical gels to colloidal glasses.

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3.  Observation of empty liquids and equilibrium gels in a colloidal clay.

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4.  Decoration of microspheres with gold nanodots--giving colloidal spheres valences.

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5.  Anisotropy of building blocks and their assembly into complex structures.

Authors:  Sharon C Glotzer; Michael J Solomon
Journal:  Nat Mater       Date:  2007-08       Impact factor: 43.841

6.  Origins of the "nucleation" free energy in the hybridization thermodynamics of short duplex DNA.

Authors:  Fidelis Manyanga; M Todd Horne; Greg P Brewood; Daniel J Fish; Rebekah Dickman; Albert S Benight
Journal:  J Phys Chem B       Date:  2009-03-05       Impact factor: 2.991

7.  Directed self-assembly of a colloidal kagome lattice.

Authors:  Qian Chen; Sung Chul Bae; Steve Granick
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

Review 8.  DNA-based soft phases.

Authors:  Tommaso Bellini; Roberto Cerbino; Giuliano Zanchetta
Journal:  Top Curr Chem       Date:  2012

9.  Effect of inert tails on the thermodynamics of DNA hybridization.

Authors:  Lorenzo Di Michele; Bortolo M Mognetti; Taiki Yanagishima; Patrick Varilly; Zachary Ruff; Daan Frenkel; Erika Eiser
Journal:  J Am Chem Soc       Date:  2014-04-23       Impact factor: 15.419

10.  Phase behavior and critical activated dynamics of limited-valence DNA nanostars.

Authors:  Silvia Biffi; Roberto Cerbino; Francesca Bomboi; Elvezia Maria Paraboschi; Rosanna Asselta; Francesco Sciortino; Tommaso Bellini
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

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  4 in total

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Journal:  Nat Commun       Date:  2016-10-21       Impact factor: 14.919

2.  Condensation and Demixing in Solutions of DNA Nanostars and Their Mixtures.

Authors:  Emanuele Locatelli; Philip H Handle; Christos N Likos; Francesco Sciortino; Lorenzo Rovigatti
Journal:  ACS Nano       Date:  2017-02-10       Impact factor: 15.881

3.  Spatially uniform dynamics in equilibrium colloidal gels.

Authors:  Enrico Lattuada; Debora Caprara; Roberto Piazza; Francesco Sciortino
Journal:  Sci Adv       Date:  2021-12-03       Impact factor: 14.136

Review 4.  Amphiphilic DNA nanostructures for bottom-up synthetic biology.

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Journal:  Chem Commun (Camb)       Date:  2021-11-30       Impact factor: 6.222

  4 in total

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