Literature DB >> 24019470

Phase behavior and critical activated dynamics of limited-valence DNA nanostars.

Silvia Biffi1, Roberto Cerbino, Francesca Bomboi, Elvezia Maria Paraboschi, Rosanna Asselta, Francesco Sciortino, Tommaso Bellini.   

Abstract

Colloidal particles with directional interactions are key in the realization of new colloidal materials with possibly unconventional phase behaviors. Here we exploit DNA self-assembly to produce bulk quantities of "DNA stars" with three or four sticky terminals, mimicking molecules with controlled limited valence. Solutions of such molecules exhibit a consolution curve with an upper critical point, whose temperature and concentration decrease with the valence. Upon approaching the critical point from high temperature, the intensity of the scattered light diverges with a power law, whereas the intensity time autocorrelation functions show a surprising two-step relaxation, somehow reminiscent of glassy materials. The slow relaxation time exhibits an Arrhenius behavior with no signs of criticality, demonstrating a unique scenario where the critical slowing down of the concentration fluctuations is subordinate to the large lifetime of the DNA bonds, with relevant analogies to critical dynamics in polymer solutions. The combination of equilibrium and dynamic behavior of DNA nanostars demonstrates the potential of DNA molecules in diversifying the pathways toward collective properties and self-assembled materials, beyond the range of phenomena accessible with ordinary molecular fluids.

Entities:  

Keywords:  DNA nanotechnology; critical behavior; limited valence colloids

Mesh:

Substances:

Year:  2013        PMID: 24019470      PMCID: PMC3785745          DOI: 10.1073/pnas.1304632110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

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Authors:  Alicia M Jackson; Jacob W Myerson; Francesco Stellacci
Journal:  Nat Mater       Date:  2004-04-18       Impact factor: 43.841

2.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

3.  Phase diagram of patchy colloids: towards empty liquids.

Authors:  Emanuela Bianchi; Julio Largo; Piero Tartaglia; Emanuela Zaccarelli; Francesco Sciortino
Journal:  Phys Rev Lett       Date:  2006-10-16       Impact factor: 9.161

4.  Dynamic crossover to tricriticality and anomalous slowdown of critical fluctuations by entanglements in polymer solutions.

Authors:  A F Kostko; M A Anisimov; J V Sengers
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-08-26

5.  Stepwise surface encoding for high-throughput assembly of nanoclusters.

Authors:  Mathew M Maye; Dmytro Nykypanchuk; Marine Cuisinier; Daniel van der Lelie; Oleg Gang
Journal:  Nat Mater       Date:  2009-03-29       Impact factor: 43.841

6.  Hierarchies of networked phases induced by multiple liquid-liquid critical points.

Authors:  Chia Wei Hsu; Julio Largo; Francesco Sciortino; Francis W Starr
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

7.  Reentrant phase diagram of network fluids.

Authors:  J Russo; J M Tavares; P I C Teixeira; M M Telo da Gama; F Sciortino
Journal:  Phys Rev Lett       Date:  2011-02-25       Impact factor: 9.161

8.  Theoretical and numerical study of the phase diagram of patchy colloids: ordered and disordered patch arrangements.

Authors:  Emanuela Bianchi; Piero Tartaglia; Emanuela Zaccarelli; Francesco Sciortino
Journal:  J Chem Phys       Date:  2008-04-14       Impact factor: 3.488

9.  From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.

Authors:  Jianping Zheng; Jens J Birktoft; Yi Chen; Tong Wang; Ruojie Sha; Pamela E Constantinou; Stephan L Ginell; Chengde Mao; Nadrian C Seeman
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962

10.  A rule of seven in Watson-Crick base-pairing of mismatched sequences.

Authors:  Ibrahim I Cisse; Hajin Kim; Taekjip Ha
Journal:  Nat Struct Mol Biol       Date:  2012-05-13       Impact factor: 15.369

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  19 in total

1.  Equilibrium gels of trivalent DNA-nanostars: Effect of the ionic strength on the dynamics.

Authors:  Francesca Bomboi; Silvia Biffi; Roberto Cerbino; Tommaso Bellini; Federico Bordi; Francesco Sciortino
Journal:  Eur Phys J E Soft Matter       Date:  2015-06-29       Impact factor: 1.890

2.  Increasing valence pushes DNA nanostar networks to the isostatic point.

Authors:  Nathaniel Conrad; Tynan Kennedy; Deborah K Fygenson; Omar A Saleh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-26       Impact factor: 11.205

3.  Enzymatic degradation of liquid droplets of DNA is modulated near the phase boundary.

Authors:  Omar A Saleh; Byoung-Jin Jeon; Tim Liedl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

4.  How to simulate patchy particles.

Authors:  Lorenzo Rovigatti; John Russo; Flavio Romano
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-14       Impact factor: 1.890

5.  Erasing no-man's land by thermodynamically stabilizing the liquid-liquid transition in tetrahedral particles.

Authors:  Frank Smallenburg; Laura Filion; Francesco Sciortino
Journal:  Nat Phys       Date:  2014-09-01       Impact factor: 20.034

6.  Leveraging Hierarchical Self-Assembly Pathways for Realizing Colloidal Photonic Crystals.

Authors:  Abhishek B Rao; James Shaw; Andreas Neophytou; Daniel Morphew; Francesco Sciortino; Roy L Johnston; Dwaipayan Chakrabarti
Journal:  ACS Nano       Date:  2020-05-06       Impact factor: 15.881

7.  Re-entrant DNA gels.

Authors:  Francesca Bomboi; Flavio Romano; Manuela Leo; Javier Fernandez-Castanon; Roberto Cerbino; Tommaso Bellini; Federico Bordi; Patrizia Filetici; Francesco Sciortino
Journal:  Nat Commun       Date:  2016-10-21       Impact factor: 14.919

8.  A possible four-phase coexistence in a single-component system.

Authors:  Kenji Akahane; John Russo; Hajime Tanaka
Journal:  Nat Commun       Date:  2016-08-25       Impact factor: 14.919

9.  Condensation and Demixing in Solutions of DNA Nanostars and Their Mixtures.

Authors:  Emanuele Locatelli; Philip H Handle; Christos N Likos; Francesco Sciortino; Lorenzo Rovigatti
Journal:  ACS Nano       Date:  2017-02-10       Impact factor: 15.881

10.  Sequence-based engineering of dynamic functions of micrometer-sized DNA droplets.

Authors:  Yusuke Sato; Tetsuro Sakamoto; Masahiro Takinoue
Journal:  Sci Adv       Date:  2020-06-03       Impact factor: 14.136

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