Literature DB >> 26121422

Knockdown of Brm and Baf170, Components of Chromatin Remodeling Complex, Facilitates Reprogramming of Somatic Cells.

Zongliang Jiang1, Yong Tang1, Xueming Zhao1, Mingyuan Zhang1, David M Donovan2, Xiuchun Cindy Tian1.   

Abstract

The SWI/SNF (SWItch/Sucrose NonFermentable or BAF, Brg/Brahma-associated factors) complexes are epigenetic modifiers of chromatin structure and undergo progressive changes in subunit composition during cellular differentiation. For example, in embryonic stem cells, esBAF contains Brg1 and Baf155, while their homologs, Brm and Baf170, are present in BAF of somatic cells. In this study, we sought to determine whether Brm and Baf170 play any roles in induced pluripotent stem cell (iPSC) reprogramming by using shRNA-mediated knockdown studies in the mouse model. We found that knocking down Brm during early, mid, and late stages (days 3, 6, and 9 after initial iPSC induction) and knocking down Baf170 during late-stage (day 9) reprogramming improve the numbers of iPSC colonies formed. We further showed that inhibition of these somatic BAF components also promotes complete reprogramming of partially reprogrammed somatic cells (pre-iPSCs). Finally, we found that the expression of Brm and Baf170 during reprogramming was regulated by Jak/Stat3 activity. Taken together, these data suggest that inhibiting somatic BAF improves complete reprogramming by facilitating the activation of the pluripotency circuitry.

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Year:  2015        PMID: 26121422      PMCID: PMC4582692          DOI: 10.1089/scd.2015.0069

Source DB:  PubMed          Journal:  Stem Cells Dev        ISSN: 1547-3287            Impact factor:   3.272


  37 in total

1.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

Review 2.  Chromatin remodelling during development.

Authors:  Lena Ho; Gerald R Crabtree
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

Review 3.  Chromatin dynamics during cellular reprogramming.

Authors:  Effie Apostolou; Konrad Hochedlinger
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

4.  SWI/SNF-Brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells.

Authors:  Benjamin L Kidder; Stephen Palmer; Jason G Knott
Journal:  Stem Cells       Date:  2009-02       Impact factor: 6.277

5.  Jak/Stat3 signaling promotes somatic cell reprogramming by epigenetic regulation.

Authors:  Yong Tang; Yan Luo; Zongliang Jiang; Yinghong Ma; Chih-Jen Lin; Chul Kim; Mark G Carter; Tomokazu Amano; Joonghong Park; Sharon Kish; Xiuchun Cindy Tian
Journal:  Stem Cells       Date:  2012-12       Impact factor: 6.277

6.  Generation of germline-competent induced pluripotent stem cells.

Authors:  Keisuke Okita; Tomoko Ichisaka; Shinya Yamanaka
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

7.  In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Authors:  Marius Wernig; Alexander Meissner; Ruth Foreman; Tobias Brambrink; Manching Ku; Konrad Hochedlinger; Bradley E Bernstein; Rudolf Jaenisch
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

8.  Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.

Authors:  Cigall Kadoch; Diana C Hargreaves; Courtney Hodges; Laura Elias; Lena Ho; Jeff Ranish; Gerald R Crabtree
Journal:  Nat Genet       Date:  2013-05-05       Impact factor: 38.330

9.  The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming.

Authors:  Abed AlFatah Mansour; Ohad Gafni; Leehee Weinberger; Asaf Zviran; Muneef Ayyash; Yoach Rais; Vladislav Krupalnik; Mirie Zerbib; Daniela Amann-Zalcenstein; Itay Maza; Shay Geula; Sergey Viukov; Liad Holtzman; Ariel Pribluda; Eli Canaani; Shirley Horn-Saban; Ido Amit; Noa Novershtern; Jacob H Hanna
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

10.  MBD3/NuRD facilitates induction of pluripotency in a context-dependent manner.

Authors:  Rodrigo L dos Santos; Luca Tosti; Aliaksandra Radzisheuskaya; Isabel M Caballero; Keisuke Kaji; Brian Hendrich; José C R Silva
Journal:  Cell Stem Cell       Date:  2014-05-15       Impact factor: 24.633

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  5 in total

1.  RBM15 Modulates the Function of Chromatin Remodeling Factor BAF155 Through RNA Methylation in Developing Cortex.

Authors:  Yuanbin Xie; Ricardo Castro-Hernández; Godwin Sokpor; Linh Pham; Ramanathan Narayanan; Joachim Rosenbusch; Jochen F Staiger; Tran Tuoc
Journal:  Mol Neurobiol       Date:  2019-04-24       Impact factor: 5.590

Review 2.  ATP-dependent chromatin remodeling during mammalian development.

Authors:  Swetansu K Hota; Benoit G Bruneau
Journal:  Development       Date:  2016-08-15       Impact factor: 6.868

3.  Epigenetic Enzymes, Age, and Ancestry Regulate the Efficiency of Human iPSC Reprogramming.

Authors:  Lantz C Mackey; Lois A Annab; Jun Yang; Bhargavi Rao; Grace E Kissling; Shepard H Schurman; Darlene Dixon; Trevor K Archer
Journal:  Stem Cells       Date:  2018-10-17       Impact factor: 6.277

4.  Brahma safeguards canalization of cardiac mesoderm differentiation.

Authors:  Swetansu K Hota; Kavitha S Rao; Andrew P Blair; Ali Khalilimeybodi; Kevin M Hu; Reuben Thomas; Kevin So; Vasumathi Kameswaran; Jiewei Xu; Benjamin J Polacco; Ravi V Desai; Nilanjana Chatterjee; Austin Hsu; Jonathon M Muncie; Aaron M Blotnick; Sarah A B Winchester; Leor S Weinberger; Ruth Hüttenhain; Irfan S Kathiriya; Nevan J Krogan; Jeffrey J Saucerman; Benoit G Bruneau
Journal:  Nature       Date:  2022-01-26       Impact factor: 69.504

Review 5.  BAF Complex in Embryonic Stem Cells and Early Embryonic Development.

Authors:  Heyao Zhang; Xuepeng Wang; Jingsheng Li; Ronghua Shi; Ying Ye
Journal:  Stem Cells Int       Date:  2021-01-16       Impact factor: 5.443

  5 in total

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