Literature DB >> 26114724

Histone variants as emerging regulators of embryonic stem cell identity.

Valentina Turinetto1, Claudia Giachino.   

Abstract

Dynamic regulation of chromatin structure is an important mechanism for balancing the pluripotency and cell fate decision in embryonic stem cells (ESCs). Indeed ESCs are characterized by unusual chromatin packaging, and a wide variety of chromatin regulators have been implicated in control of pluripotency and differentiation. Genome-wide maps of epigenetic factors have revealed a unique epigenetic signature in pluripotent ESCs and have contributed models to explain their plasticity. In addition to the well known epigenetic regulation through DNA methylation, histone posttranslational modifications, chromatin remodeling, and non-coding RNA, histone variants are emerging as important regulators of ESC identity. In this review, we summarize and discuss the recent progress that has highlighted the central role of histone variants in ESC pluripotency and ESC fate, focusing, in particular, on H1 variants, H2A variants H2A.X, H2A.Z and macroH2A and H3 variant H3.3.

Entities:  

Keywords:  ChIP-seq, Chromatin Immunoprecipitation Sequencing; EB, embryoid body; EHP cells, endoderm/hepatic progenitor cells; ESCs, embryonic stem cells; MEFs, mouse embryonic fibroblasts; NLBs, nucleolar-like bodies; PcG, Polycomb group; TSS, transcription start site; chromatin dynamics; embryonic stem cell; histone variant; iPSCs, induced pluripotent stem cells; pluripotency; self-renewal

Mesh:

Substances:

Year:  2015        PMID: 26114724      PMCID: PMC4622597          DOI: 10.1080/15592294.2015.1053682

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  99 in total

1.  Varied expression patterns of human H1 histone genes in different cell lines.

Authors:  T Meergans; W Albig; D Doenecke
Journal:  DNA Cell Biol       Date:  1997-09       Impact factor: 3.311

2.  Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions.

Authors:  Adrian P Bracken; Nikolaj Dietrich; Diego Pasini; Klaus H Hansen; Kristian Helin
Journal:  Genes Dev       Date:  2006-04-17       Impact factor: 11.361

3.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

4.  Testis-specific expression of a novel human H3 histone gene.

Authors:  O Witt; W Albig; D Doenecke
Journal:  Exp Cell Res       Date:  1996-12-15       Impact factor: 3.905

5.  The mouse histone H1 genes: gene organization and differential regulation.

Authors:  Z F Wang; A M Sirotkin; G M Buchold; A I Skoultchi; W F Marzluff
Journal:  J Mol Biol       Date:  1997-08-08       Impact factor: 5.469

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.

Authors:  E P Rogakou; D R Pilch; A H Orr; V S Ivanova; W M Bonner
Journal:  J Biol Chem       Date:  1998-03-06       Impact factor: 5.157

8.  Transcripts from opposite strands of gamma satellite DNA are differentially expressed during mouse development.

Authors:  F Rudert; S Bronner; J M Garnier; P Dollé
Journal:  Mamm Genome       Date:  1995-02       Impact factor: 2.957

9.  An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.

Authors:  C E McPherson; E Y Shim; D S Friedman; K S Zaret
Journal:  Cell       Date:  1993-10-22       Impact factor: 41.582

10.  Phylogenetic analysis of the core histones H2A, H2B, H3, and H4.

Authors:  T H Thatcher; M A Gorovsky
Journal:  Nucleic Acids Res       Date:  1994-01-25       Impact factor: 16.971

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  15 in total

1.  Epigenetic regulation of cellular and cytomegalovirus genes during myeloid cell development.

Authors:  Xue-Feng Liu; Mary Hummel; Michael Abecassis
Journal:  Intern Med Rev (Wash D C)       Date:  2017-03

Review 2.  Histone variants on the move: substrates for chromatin dynamics.

Authors:  Paul B Talbert; Steven Henikoff
Journal:  Nat Rev Mol Cell Biol       Date:  2016-12-07       Impact factor: 94.444

3.  Dynamic Incorporation of Histone H3 Variants into Chromatin Is Essential for Acquisition of Aggressive Traits and Metastatic Colonization.

Authors:  Ana P Gomes; Didem Ilter; Vivien Low; Adam Rosenzweig; Zih-Jie Shen; Tanya Schild; Martin A Rivas; Ekrem E Er; Dylan R McNally; Anders P Mutvei; Julie Han; Yi-Hung Ou; Paola Cavaliere; Edouard Mullarky; Michal Nagiec; Sejeong Shin; Sang-Oh Yoon; Noah Dephoure; Joan Massagué; Ari M Melnick; Lewis C Cantley; Jessica K Tyler; John Blenis
Journal:  Cancer Cell       Date:  2019-09-26       Impact factor: 31.743

4.  Excess growth hormone suppresses DNA damage repair in epithelial cells.

Authors:  Vera Chesnokova; Svetlana Zonis; Robert Barrett; Hiraku Kameda; Kolja Wawrowsky; Anat Ben-Shlomo; Masaaki Yamamoto; John Gleeson; Catherine Bresee; Vera Gorbunova; Shlomo Melmed
Journal:  JCI Insight       Date:  2019-02-07

Review 5.  Influence of Amino Acid Metabolism on Embryonic Stem Cell Function and Differentiation.

Authors:  Michael S Kilberg; Naohiro Terada; Jixiu Shan
Journal:  Adv Nutr       Date:  2016-07-15       Impact factor: 8.701

6.  HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants.

Authors:  Eli J Draizen; Alexey K Shaytan; Leonardo Mariño-Ramírez; Paul B Talbert; David Landsman; Anna R Panchenko
Journal:  Database (Oxford)       Date:  2016-03-17       Impact factor: 3.451

Review 7.  Epigenetics of Renal Development and Disease.

Authors:  Sylvia A Hilliard; Samir S El-Dahr
Journal:  Yale J Biol Med       Date:  2016-12-23

8.  TGF-β1 promotes expression of fibrosis-related genes through the induction of histone variant H3.3 and histone chaperone HIRA.

Authors:  Toshihiro Shindo; Shigehiro Doi; Ayumu Nakashima; Kensuke Sasaki; Koji Arihiro; Takao Masaki
Journal:  Sci Rep       Date:  2018-09-19       Impact factor: 4.379

9.  Regulation of GLI1 by cis DNA elements and epigenetic marks.

Authors:  Robert Taylor; Jun Long; Joon Won Yoon; Ronnie Childs; Kathrine B Sylvestersen; Michael L Nielsen; King-Fu Leong; Stephen Iannaccone; David O Walterhouse; David J Robbins; Philip Iannaccone
Journal:  DNA Repair (Amst)       Date:  2019-05-02

10.  Spatiotemporal dynamics of γH2AX in the mouse brain after acute irradiation at different postnatal days with special reference to the dentate gyrus of the hippocampus.

Authors:  Feng Ru Tang; Lian Liu; Hong Wang; Kimberly Jen Ni Ho; Gautam Sethi
Journal:  Aging (Albany NY)       Date:  2021-06-23       Impact factor: 5.682

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