Literature DB >> 26104374

Transposable Phage Mu.

Rasika M Harshey1.   

Abstract

Transposable phage Mu has played a major role in elucidating the mechanism of movement of mobile DNA elements. The high efficiency of Mu transposition has facilitated a detailed biochemical dissection of the reaction mechanism, as well as of protein and DNA elements that regulate transpososome assembly and function. The deduced phosphotransfer mechanism involves in-line orientation of metal ion-activated hydroxyl groups for nucleophilic attack on reactive diester bonds, a mechanism that appears to be used by all transposable elements examined to date. A crystal structure of the Mu transpososome is available. Mu differs from all other transposable elements in encoding unique adaptations that promote its viral lifestyle. These adaptations include multiple DNA (enhancer, SGS) and protein (MuB, HU, IHF) elements that enable efficient Mu end synapsis, efficient target capture, low target specificity, immunity to transposition near or into itself, and efficient mechanisms for recruiting host repair and replication machineries to resolve transposition intermediates. MuB has multiple functions, including target capture and immunity. The SGS element promotes gyrase-mediated Mu end synapsis, and the enhancer, aided by HU and IHF, participates in directing a unique topological architecture of the Mu synapse. The function of these DNA and protein elements is important during both lysogenic and lytic phases. Enhancer properties have been exploited in the design of mini-Mu vectors for genetic engineering. Mu ends assembled into active transpososomes have been delivered directly into bacterial, yeast, and human genomes, where they integrate efficiently, and may prove useful for gene therapy.

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Year:  2014        PMID: 26104374      PMCID: PMC4486318          DOI: 10.1128/microbiolspec.MDNA3-0007-2014

Source DB:  PubMed          Journal:  Microbiol Spectr        ISSN: 2165-0497


  139 in total

1.  Sequence and positional requirements for DNA sites in a mu transpososome.

Authors:  Ilana Goldhaber-Gordon; Michael H Early; Matthew K Gray; Tania A Baker
Journal:  J Biol Chem       Date:  2001-12-27       Impact factor: 5.157

2.  Progressive structural transitions within Mu transpositional complexes.

Authors:  Katsuhiko Yanagihara; Kiyoshi Mizuuchi
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

3.  Mismatch-targeted transposition of Mu: a new strategy to map genetic polymorphism.

Authors:  Katsuhiko Yanagihara; Kiyoshi Mizuuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

4.  MuB is an AAA+ ATPase that forms helical filaments to control target selection for DNA transposition.

Authors:  Naoko Mizuno; Marija Dramićanin; Michiyo Mizuuchi; Julia Adam; Yi Wang; Yong-Woon Han; Wei Yang; Alasdair C Steven; Kiyoshi Mizuuchi; Santiago Ramón-Maiques
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

5.  The AAA+ ClpX machine unfolds a keystone subunit to remodel the Mu transpososome.

Authors:  Aliaa H Abdelhakim; Robert T Sauer; Tania A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

Review 6.  Target site selection in transposition.

Authors:  N L Craig
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

7.  Crucial role for DNA supercoiling in Mu transposition: a kinetic study.

Authors:  Z Wang; R M Harshey
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

8.  Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complex.

Authors:  Eric C Greene; Kiyoshi Mizuuchi
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

9.  Infecting bacteriophage mu DNA forms a circular DNA-protein complex.

Authors:  R M Harshey; A I Bukhari
Journal:  J Mol Biol       Date:  1983-06-25       Impact factor: 5.469

10.  Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote.

Authors:  Julia M Richardson; Sean D Colloms; David J Finnegan; Malcolm D Walkinshaw
Journal:  Cell       Date:  2009-09-18       Impact factor: 41.582

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  21 in total

Review 1.  Julian Davies and the discovery of kanamycin resistance transposon Tn5.

Authors:  Douglas E Berg
Journal:  J Antibiot (Tokyo)       Date:  2016-10-12       Impact factor: 2.649

2.  Fluorescent fusions of the N protein of phage Mu label DNA damage in living cells.

Authors:  Matthew V Kotlajich; Jun Xia; Yin Zhai; Hsin-Yu Lin; Catherine C Bradley; Xi Shen; Qian Mei; Anthony Z Wang; Erica J Lynn; Chandan Shee; Li-Tzu Chen; Lei Li; Kyle M Miller; Christophe Herman; P J Hastings; Susan M Rosenberg
Journal:  DNA Repair (Amst)       Date:  2018-09-14

3.  A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition.

Authors:  David M Walker; Peter L Freddolino; Rasika M Harshey
Journal:  Cell       Date:  2020-02-13       Impact factor: 41.582

4.  Lysogeny in nature: mechanisms, impact and ecology of temperate phages.

Authors:  Cristina Howard-Varona; Katherine R Hargreaves; Stephen T Abedon; Matthew B Sullivan
Journal:  ISME J       Date:  2017-03-14       Impact factor: 10.302

5.  The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity.

Authors:  Kevin J Forsberg; Danica T Schmidtke; Rachel Werther; Ruben V Uribe; Deanna Hausman; Morten O A Sommer; Barry L Stoddard; Brett K Kaiser; Harmit S Malik
Journal:  PLoS Biol       Date:  2021-10-13       Impact factor: 8.029

6.  Widespread phages of endosymbionts: Phage WO genomics and the proposed taxonomic classification of Symbioviridae.

Authors:  Sarah R Bordenstein; Seth R Bordenstein
Journal:  PLoS Genet       Date:  2022-06-06       Impact factor: 6.020

7.  The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into Pseudomonas aeruginosa.

Authors:  Marco Antonio Carballo-Ontiveros; Adrián Cazares; Pablo Vinuesa; Luis Kameyama; Gabriel Guarneros
Journal:  J Virol       Date:  2020-07-16       Impact factor: 5.103

8.  TnFLXopen: Markerless Transposons for Functional Fluorescent Fusion Proteins and Protein Interaction Prediction.

Authors:  Felix Dempwolff; Daniel B Kearns
Journal:  Microbiol Spectr       Date:  2022-05-02

Review 9.  Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity.

Authors:  Eric C Keen; Gautam Dantas
Journal:  Trends Microbiol       Date:  2018-06-13       Impact factor: 17.079

Review 10.  Temperate Bacteriophages-The Powerful Indirect Modulators of Eukaryotic Cells and Immune Functions.

Authors:  Martyna Cieślik; Natalia Bagińska; Ewa Jończyk-Matysiak; Alicja Węgrzyn; Grzegorz Węgrzyn; Andrzej Górski
Journal:  Viruses       Date:  2021-05-28       Impact factor: 5.048

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