| Literature DB >> 26100061 |
René van den Hoven1, Emre Gür2, Manuela Schlamanig3, Martin Hofer4, Ali Cesur Onmaz5, Ralf Steinborn6.
Abstract
BACKGROUND: A single nucleotide polymorphism (SNP) in the first intron of the myostatin gene (MSTN) is associated with aptness of elite Thoroughbreds to race over sprint, middle or long distances. This intronic marker (g.66493737 T ≻ C), a short interspersed nuclear element (SINE) of 227 bp (Ins227bp) insertion polymorphism in the MSTN promoter, and the adjacent SNP BIEC2-417495 have not been studied for their association with racing aptness of the average Thoroughbreds raced in countries with lower status of the racing industry. This study investigated these markers regarding their prevalence and association with performance in common race horses. Markers were genotyped by amplification refractory mutation system-quantitative PCR (ARMS-qPCR) or amplicon melting. Furthermore, we asked whether the Ins227bp marker might theoretically regulate the expression of myostatin by generating a novel target for DNA methylation or by changing binding sites for transcription factors. Putative sites for DNA methylation or binding of transcription factors were predicted by MethPrimer and by the softwares JASPAR, MatInspector and UniPROBE, respectively.Entities:
Mesh:
Substances:
Year: 2015 PMID: 26100061 PMCID: PMC4476204 DOI: 10.1186/s12917-015-0428-3
Source DB: PubMed Journal: BMC Vet Res ISSN: 1746-6148 Impact factor: 2.741
Fig. 1Location of the target polymorphisms on chromosome 18. Only the genes (in italics) most closely surrounding the three markers are depicted
Distribution of marker alleles across the cohort of non-elite horses (n = 56)
| BIEC2-417495 | Ins227bp | g.66493737C/T |
|---|---|---|
| 18 T/T | 14 N/N 4 I/N | 13 T/T 5 C/T |
| 28 C/T | 27 I/N | 26 C/T |
| 1 II | 2 C/C | |
| 10 C/C | 8 I/I 2 IN | 8 C/C 2 C/T |
Mean ± sd of the performance indicators per marker genotype
| BIEC2-417495 | INS227bp | g.66493737 T ≻ C | |
|---|---|---|---|
|
|
|
| |
| Victories | 2.2 ± 2.5 | 2.1 ± 2.5 | 1.9 ± 2.4 |
| Place & shows | 8.6 ± 7.7 | 9.1 ± 7.7 | 8.3 ± 7.7 |
| Races run | 20.7 ± 14.9 | 18.8 ± 11.7 | 17.6 ± 11.77 |
| Life earnings (€) | 20261 ± 18749 | 22860 ± 18398 | 20638 ± 18714 |
|
|
|
|
|
| Best race earnings (€) | 5578 ± 5708 | 5992 ± 5797 | 5457 ± 5722 |
| Earnings/start (€) | 919 ± 917 | 1,214 ± 961 | 1102 ± 973 |
|
|
|
| |
| Victories | 2.3 ± 2.3 | 2.6 ± 2.9 | 2.7 ± 2.9 |
| Place & shows | 6.6 ± 6.1 | 6.7 ± 5.8 | 6.8 ± 5.8 |
| Races run | 17.5 ± 12.5 | 19.8 ± 18.7 | 19.8 ± 18.7 |
| Life earnings (€) | 28784 ± 32105 | 28,823 ± 33785 | 29226 ± 33513 |
|
| 1690 ± 361 |
|
|
| Best race earnings (€) | 7890 ± 8184 | 7376 ± 7818 | 7663 ± 7730 |
| Earnings/start (€) | 1626 ± 1909 | 1441 ± 1812 | 1498 ± 1797 |
|
|
|
| |
| Victories | 3.1 ± 4.0 | 2.7 ± 3.4 | 2.9 ± 3.5 |
| Place & shows | 8.4 ± 10.1 | 8.4 ± 10.4 | 8.9 ± 10.7 |
| Races run | 22.4 ± 25.0 | 19.8 ± 19.0 | 20.8 ± 19.4 |
| Life earnings (€) | 30382 ± 43537 | 28471 ± 43456 | 29620 ± 45009 |
|
|
|
|
|
| Best race earnings (€) | 6074 ± 6655 | 6297 ± 7127 | 6028 ± 7343 |
| Earnings/start (€) | 1122 ± 1272 | 1162 ± 1374 | 1103 ± 1412 |
ap = 0.01
bp = 0.03 cp = 0.02
dp = 0.03 ep = 0.01
Corresponding letters per column indicate significance pairwise difference (Dunn’s Test)
Mean and standard deviation of RSS per genotype for sprint and longer distance and number of starts on these distances
| BIEC2-417495 | INS227bp | g.66493737 T ≻ C | |
|---|---|---|---|
|
|
|
| |
| RSS for: | |||
| ≤1300 m | 3.5 ± 2.3 |
|
|
| >1300 m | 2.6 ± 1.6 | 2.8 ± 3.0 | 2.6 ± 1.6 |
| races ≤1300 m | 8.6 ± 10.0 | 8.5 ± 10.7 | 7.8 ± 10.4 |
| races >1300 m | 10.2 ± 9.4 | 8.8 ± 5.5 | 8.3 ± 5.4 |
|
|
|
| |
| RSS for: | |||
| ≤1300 m | 2.6 ± 2.9 | 2.8 ± 3.0 |
|
| >1300 m | 2.9 ± 1.4 | 2.8 ± 3.0 | 2.8 ± 1.4 |
| races ≤1300 m | 2.8 ± 3.4 | 2.9 ± 3.2 | 3.0 ± 3.2 |
| races >1300 m | 14.2 ± 10.9 | 16.3 ± 17.5 | 16.3 ± 17.5 |
|
|
|
| |
| RSS for: | |||
| ≤ 1300 m | 2.0 ± 2.8 |
|
|
| >1300 m | 2.8 ± 1.3 | 2.9 ± 1.3 | 3.0 ± 1.3 |
| races ≤ 1300 m | 3.2 ± 6.0 | 4.0 ± 6.1 | 3.5 ± 7.0 |
| races >1300 m | 19.7 ± 23.0 | 15.3 ± 15.8 | 18.0 ± 16.1 |
a p = 0.05
b p = 0.037 c p = 0.046
Corresponding letters within a column indicate significance pairwise difference (Dunn’s Test)
Fig. 2Insertion of the SINE marker Ins227bp into the equine MSTN promoter created one, three or four putative transcription factor binding sites according to the pairwise intersections of predictions obtained by the software tools JASPAR, MatInspector and UniPROBE. The pairwise intersections contained Nkx3-2 and the closely related Nkx3-1 (JASPAR crossed with UniPROBE), Nkx2-5, ZNF354 and MZF1 (JASPAR with MatInspector), as well as PlagI1 (twice), ZNF300 or nearly identical ZNFs and Nkx2-5 (MatInspector with UniPROBE). The Venn diagram was generated with eulerAPE 3.0.0 [ Micallef L, Rodgers P: eulerAPE: Drawing Area-Proportional 3-Venn Diagrams Using Ellipses. PLoS ONE 2014, 9: e101717]
Fig. 3Inserting the Ins227bp SINE into the MSTN promoter generates a novel CpG island. The 184 bp island (nucleotides 78 to 261 highlighted by light blue background) was identified by the MethPrimer software. Red bars designate CpG dinucleotides. The integration-flanking set of 15 bp direct repeats, TAAAAAGCCACTTGG, one being part of and the other being adjacent to the SINE insertion, is depicted by arrows